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The map label for this gene is osmF [H]

Identifier: 94984282

GI number: 94984282

Start: 162924

End: 163826

Strand: Reverse

Name: osmF [H]

Synonym: Dgeo_0174

Alternate gene names: 94984282

Gene position: 163826-162924 (Counterclockwise)

Preceding gene: 94984283

Following gene: 94984281

Centisome position: 6.64

GC content: 63.12

Gene sequence:

>903_bases
ATGAGCAAGGTCCTCTGTCTCTCACTGGCTGTGCTGATGGGCAGCGCCGCCGCCAAACCTATTGTGGTGGGCAGCAAGCT
CGACCCCGAGGCCCAGATTCTCGGGCAGATGATCGTCTTGACGCTGCGCAATGCCGGGCTGGAGGTGAGCGACAAGACCA
ATCTGGGTGATACCGGCGTGAACCGCAAGGCGATTCTGGCGGGTGAGATCGACGTGTACCCCGAGTACACCGGCAACGCG
GTGTATCTCTTTCCACAGGCCAAGATCAGCGCCAAGGATGCAGGGAATCCCGGCAAAATCTACGGGTATGCCCGGCAGCT
CGACGCCAAAAACGGCATCACTTGGCTGAAGCCGGCCAACGTCAACAACACCTGGGTGATCGCCGTGCCGCAAGCGCTGG
CACAACGGGAAAAGCTGAGCAGCGTGGCCGACCTGGCTCGCTACCTCCAGGCGGGGGGCCGCTTCAAGATCGCCGGGAGT
CCCGAGTTCTTTAACCGCCCGGACACCATGCCCGCCTTTGAGGCTGCCTACGGCTTCAAGCTGCGACCCGACCAGAAGCT
GGTGTTGGCTGGGGCCACGCCGCCACAGACGCAGCAGGCGGCCGCCAACGGCACCAACGGTGTGAATGCTGCGATGGCCT
ACGGCACAGACGGCACCCTGGCCGCGCTCAAATTGGTGGCCCTCAAAGATCCCAAGGGCGCACAGGCGGTCTATCAGCCT
GCCCCGATCATCCGCAGCGAGGTGCTCCAGGCTCACCCGGAGATCGGGACACTGCTCAACAAGACCTTTGCCACGCTCAC
GCAAGCGGGGCTGCAAAGGTTAAATGCCCAGGTCGCGCTCGAAGGCCGCACCGCGCAGGAGGTGGCCCAAAGCTACCTCA
AGAGCAAGGGGCTGATCAAGTGA

Upstream 100 bases:

>100_bases
AGGGCCGCCCCGAACGGGTGGCCTTTTGCTGCCCGTTTTGCTGCACTTTGTAAGGTGTCCTACGTGAAAGCGCTCTGGCG
ACGCGTACGTTGAAACCAAC

Downstream 100 bases:

>100_bases
TCCCGCAACGCCTGGAACGCTGCTGCCCGCGCGGGGACAAGCGTCTCGCGTGAGGGTCGCCGGACAGCAGGAGGCGAGCT
GGGCTGTCGCCCCCGCGACT

Product: substrate-binding region of ABC-type glycine betaine transport system

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 300; Mature: 299

Protein sequence:

>300_residues
MSKVLCLSLAVLMGSAAAKPIVVGSKLDPEAQILGQMIVLTLRNAGLEVSDKTNLGDTGVNRKAILAGEIDVYPEYTGNA
VYLFPQAKISAKDAGNPGKIYGYARQLDAKNGITWLKPANVNNTWVIAVPQALAQREKLSSVADLARYLQAGGRFKIAGS
PEFFNRPDTMPAFEAAYGFKLRPDQKLVLAGATPPQTQQAAANGTNGVNAAMAYGTDGTLAALKLVALKDPKGAQAVYQP
APIIRSEVLQAHPEIGTLLNKTFATLTQAGLQRLNAQVALEGRTAQEVAQSYLKSKGLIK

Sequences:

>Translated_300_residues
MSKVLCLSLAVLMGSAAAKPIVVGSKLDPEAQILGQMIVLTLRNAGLEVSDKTNLGDTGVNRKAILAGEIDVYPEYTGNA
VYLFPQAKISAKDAGNPGKIYGYARQLDAKNGITWLKPANVNNTWVIAVPQALAQREKLSSVADLARYLQAGGRFKIAGS
PEFFNRPDTMPAFEAAYGFKLRPDQKLVLAGATPPQTQQAAANGTNGVNAAMAYGTDGTLAALKLVALKDPKGAQAVYQP
APIIRSEVLQAHPEIGTLLNKTFATLTQAGLQRLNAQVALEGRTAQEVAQSYLKSKGLIK
>Mature_299_residues
SKVLCLSLAVLMGSAAAKPIVVGSKLDPEAQILGQMIVLTLRNAGLEVSDKTNLGDTGVNRKAILAGEIDVYPEYTGNAV
YLFPQAKISAKDAGNPGKIYGYARQLDAKNGITWLKPANVNNTWVIAVPQALAQREKLSSVADLARYLQAGGRFKIAGSP
EFFNRPDTMPAFEAAYGFKLRPDQKLVLAGATPPQTQQAAANGTNGVNAAMAYGTDGTLAALKLVALKDPKGAQAVYQPA
PIIRSEVLQAHPEIGTLLNKTFATLTQAGLQRLNAQVALEGRTAQEVAQSYLKSKGLIK

Specific function: May be part of an ABC transporter complex involved in uptake of osmoprotectant molecules [H]

COG id: COG1732

COG function: function code M; Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein)

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1788452, Length=297, Percent_Identity=49.1582491582492, Blast_Score=272, Evalue=2e-74,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007210 [H]

Pfam domain/function: PF04069 OpuAC [H]

EC number: NA

Molecular weight: Translated: 31773; Mature: 31642

Theoretical pI: Translated: 10.06; Mature: 10.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKVLCLSLAVLMGSAAAKPIVVGSKLDPEAQILGQMIVLTLRNAGLEVSDKTNLGDTGV
CCHHHHHHHHHHHCCCCCCCEEECCCCCHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCC
NRKAILAGEIDVYPEYTGNAVYLFPQAKISAKDAGNPGKIYGYARQLDAKNGITWLKPAN
CCEEEEEECEEECCCCCCCEEEEEECCEECCCCCCCCCCEEHHHHHHCCCCCEEEECCCC
VNNTWVIAVPQALAQREKLSSVADLARYLQAGGRFKIAGSPEFFNRPDTMPAFEAAYGFK
CCCEEEEECCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHCCCCCCCCHHHHHCCCE
LRPDQKLVLAGATPPQTQQAAANGTNGVNAAMAYGTDGTLAALKLVALKDPKGAQAVYQP
ECCCCEEEEECCCCCCHHHHHCCCCCCCCEEEEECCCCHHHHEEEEEECCCCCCCEECCC
APIIRSEVLQAHPEIGTLLNKTFATLTQAGLQRLNAQVALEGRTAQEVAQSYLKSKGLIK
CHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
SKVLCLSLAVLMGSAAAKPIVVGSKLDPEAQILGQMIVLTLRNAGLEVSDKTNLGDTGV
CHHHHHHHHHHHCCCCCCCEEECCCCCHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCC
NRKAILAGEIDVYPEYTGNAVYLFPQAKISAKDAGNPGKIYGYARQLDAKNGITWLKPAN
CCEEEEEECEEECCCCCCCEEEEEECCEECCCCCCCCCCEEHHHHHHCCCCCEEEECCCC
VNNTWVIAVPQALAQREKLSSVADLARYLQAGGRFKIAGSPEFFNRPDTMPAFEAAYGFK
CCCEEEEECCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHCCCCCCCCHHHHHCCCE
LRPDQKLVLAGATPPQTQQAAANGTNGVNAAMAYGTDGTLAALKLVALKDPKGAQAVYQP
ECCCCEEEEECCCCCCHHHHHCCCCCCCCEEEEECCCCHHHHEEEEEECCCCCCCEECCC
APIIRSEVLQAHPEIGTLLNKTFATLTQAGLQRLNAQVALEGRTAQEVAQSYLKSKGLIK
CHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]