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The map label for this gene is hup [H]

Identifier: 94984283

GI number: 94984283

Start: 163941

End: 164291

Strand: Reverse

Name: hup [H]

Synonym: Dgeo_0175

Alternate gene names: 94984283

Gene position: 164291-163941 (Counterclockwise)

Preceding gene: 94984284

Following gene: 94984282

Centisome position: 6.66

GC content: 66.67

Gene sequence:

>351_bases
ATGGCCAGAACGTCGCAGTCGAGAGCCAAAGACAACGCCACCGCGAGCAGGCGTGAAGAGGCCCGCGAGGGAAGCGGCAA
GATCGCCAAGACGCAGATTGTCGATCAGATCGCGGAACGGACCAGTCTGAGCCGCAAGCAGGCCAGCGAGGCGGTCGCCA
CGATCCTCGACACCATCGCGCAGGCCCTCCGCGAGGGCAAGACGGTGGGCCTGCCGGGCCTGGGTACCCTCAGCGTGACC
GAGACCGCTGCCCGCACGGGTGTGCGCCCGGGCACCTCCGAGCGCATCCAGATTCCCGCCGGCAAGAAGATCCGGTTCAA
GGTCGCCACCACGCTCAAGGGCAATCTGTAA

Upstream 100 bases:

>100_bases
GCGGCCGAGCGTAACCCTGCGGCTTGCATCCGGCCAAACGTGTGTTACTGTGCATTTGAGCCAACAATTCGCTCAAATCC
ACCTTTCGGAGGTCTATGGC

Downstream 100 bases:

>100_bases
GGGACTTTCTCCCAAGGGCCGCCCCGAACGGGTGGCCTTTTGCTGCCCGTTTTGCTGCACTTTGTAAGGTGTCCTACGTG
AAAGCGCTCTGGCGACGCGT

Product: histone-like protein DNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 116; Mature: 115

Protein sequence:

>116_residues
MARTSQSRAKDNATASRREEAREGSGKIAKTQIVDQIAERTSLSRKQASEAVATILDTIAQALREGKTVGLPGLGTLSVT
ETAARTGVRPGTSERIQIPAGKKIRFKVATTLKGNL

Sequences:

>Translated_116_residues
MARTSQSRAKDNATASRREEAREGSGKIAKTQIVDQIAERTSLSRKQASEAVATILDTIAQALREGKTVGLPGLGTLSVT
ETAARTGVRPGTSERIQIPAGKKIRFKVATTLKGNL
>Mature_115_residues
ARTSQSRAKDNATASRREEAREGSGKIAKTQIVDQIAERTSLSRKQASEAVATILDTIAQALREGKTVGLPGLGTLSVTE
TAARTGVRPGTSERIQIPAGKKIRFKVATTLKGNL

Specific function: Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions [H]

COG id: COG0776

COG function: function code L; Bacterial nucleoid DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial histone-like protein family [H]

Homologues:

Organism=Escherichia coli, GI1786644, Length=84, Percent_Identity=39.2857142857143, Blast_Score=62, Evalue=1e-11,
Organism=Escherichia coli, GI1790433, Length=84, Percent_Identity=41.6666666666667, Blast_Score=61, Evalue=2e-11,

Paralogues:

None

Copy number: 860 Molecules/Cell In: Growth-Phase, Minimal Media (Based on E. coli). 2040 Molecules/Cell In: Stationary-Phase, Rich-Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000119
- InterPro:   IPR010992 [H]

Pfam domain/function: PF00216 Bac_DNA_binding [H]

EC number: NA

Molecular weight: Translated: 12303; Mature: 12172

Theoretical pI: Translated: 11.58; Mature: 11.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARTSQSRAKDNATASRREEAREGSGKIAKTQIVDQIAERTSLSRKQASEAVATILDTIA
CCCCCCHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QALREGKTVGLPGLGTLSVTETAARTGVRPGTSERIQIPAGKKIRFKVATTLKGNL
HHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEECCCCCEEEEEEECCCCCCC
>Mature Secondary Structure 
ARTSQSRAKDNATASRREEAREGSGKIAKTQIVDQIAERTSLSRKQASEAVATILDTIA
CCCCCHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QALREGKTVGLPGLGTLSVTETAARTGVRPGTSERIQIPAGKKIRFKVATTLKGNL
HHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEECCCCCEEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10567266 [H]