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The map label for this gene is qseB [H]

Identifier: 94314717

GI number: 94314717

Start: 2556229

End: 2556957

Strand: Reverse

Name: qseB [H]

Synonym: Rmet_5798

Alternate gene names: 94314717

Gene position: 2556957-2556229 (Counterclockwise)

Preceding gene: 94314718

Following gene: 94314716

Centisome position: 99.1

GC content: 67.63

Gene sequence:

>729_bases
ATGCGTGTATTGCTGGTAGAAGATGACGCCATGATCGGCGAAAGCGTGAAGGTGGCGCTGCGCCAGGAGGGTTTTACGGT
CGACTGGGTGCGCGATGGCGATGCCGGGCTCGACGCCGCATCGGACCAGCACGGTCCCCGGGCCGACGGCGGCTACGACG
TGGTGCTGCTAGACCTGGGTTTGCCGCGCCGCCCGGGGCTCGACGTCCTGAAGACGCTACGGGCCCGCAACGTACGCACG
CCGGTGCTGATCCTGACCGCGCGCGACGCGGTGGCCGACCGCGTGGCAGGACTCAACGCTGGCGCCGACGACTACCTGAT
CAAGCCGTTCGACCTGCAGGAGCTGGCGGCCCGTATGCACGCGCTGGTGCGCCGTGCCGAGGGGCGCGCGGAACCGGTGC
TGCGCTACGGCGACATCATGCTCAACCCCGCCACCCGCGAAGCCACCCAGGCCGGCGCGTCCGTCCGGCTGTCGGCGCGT
GAATTCGCACTGCTGTCGGCGCTGATGGCTCGACCCGGCAAGGTGTGGTCGGTGCCGCAGCTTCAGGAGCGGTTGTATGG
CTGGGATGATGAAGTCGGCAGCAATACGGTGGAGGTCTATATCCATGCGCTGCGCCGCAAGTTCGGCGCGGCGCTGATTC
GCAATATCCGCGGGGTGGGCTATGTGATCCCCGCCGAAAGCGGCGCGGAACAAGACACCAAGGGTGGTCCCGAGGGAGCC
ATGCATTGA

Upstream 100 bases:

>100_bases
CACGGCCGAGTATCCGGCGCTGCCGGGCCTGGCTCGCGCACTGGCGGATCGGCTTGAAGCCGACGCGCGCCGCGCCGAGA
CCTCTCAATCCTGAAAGACG

Downstream 100 bases:

>100_bases
TGCGCTCGATTCAACGTACGCTGCTCTGGTGGCTGGCGGCGGGGCTTGCCGTGGGGATCGCCGTGGCCACCGCGCTGATC
TATGGGCAGGCGCGGCAGGA

Product: winged helix family two component transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 242; Mature: 242

Protein sequence:

>242_residues
MRVLLVEDDAMIGESVKVALRQEGFTVDWVRDGDAGLDAASDQHGPRADGGYDVVLLDLGLPRRPGLDVLKTLRARNVRT
PVLILTARDAVADRVAGLNAGADDYLIKPFDLQELAARMHALVRRAEGRAEPVLRYGDIMLNPATREATQAGASVRLSAR
EFALLSALMARPGKVWSVPQLQERLYGWDDEVGSNTVEVYIHALRRKFGAALIRNIRGVGYVIPAESGAEQDTKGGPEGA
MH

Sequences:

>Translated_242_residues
MRVLLVEDDAMIGESVKVALRQEGFTVDWVRDGDAGLDAASDQHGPRADGGYDVVLLDLGLPRRPGLDVLKTLRARNVRT
PVLILTARDAVADRVAGLNAGADDYLIKPFDLQELAARMHALVRRAEGRAEPVLRYGDIMLNPATREATQAGASVRLSAR
EFALLSALMARPGKVWSVPQLQERLYGWDDEVGSNTVEVYIHALRRKFGAALIRNIRGVGYVIPAESGAEQDTKGGPEGA
MH
>Mature_242_residues
MRVLLVEDDAMIGESVKVALRQEGFTVDWVRDGDAGLDAASDQHGPRADGGYDVVLLDLGLPRRPGLDVLKTLRARNVRT
PVLILTARDAVADRVAGLNAGADDYLIKPFDLQELAARMHALVRRAEGRAEPVLRYGDIMLNPATREATQAGASVRLSAR
EFALLSALMARPGKVWSVPQLQERLYGWDDEVGSNTVEVYIHALRRKFGAALIRNIRGVGYVIPAESGAEQDTKGGPEGA
MH

Specific function: Member of a two-component regulatory system qseB/qseC. Activates the flagella regulon by activating transcription of flhDC [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1789402, Length=223, Percent_Identity=50.2242152466368, Blast_Score=217, Evalue=5e-58,
Organism=Escherichia coli, GI1790552, Length=228, Percent_Identity=42.5438596491228, Blast_Score=177, Evalue=8e-46,
Organism=Escherichia coli, GI1786784, Length=233, Percent_Identity=34.3347639484979, Blast_Score=136, Evalue=1e-33,
Organism=Escherichia coli, GI1787375, Length=227, Percent_Identity=35.6828193832599, Blast_Score=134, Evalue=4e-33,
Organism=Escherichia coli, GI87082012, Length=229, Percent_Identity=35.8078602620087, Blast_Score=128, Evalue=3e-31,
Organism=Escherichia coli, GI1790860, Length=226, Percent_Identity=36.7256637168142, Blast_Score=126, Evalue=2e-30,
Organism=Escherichia coli, GI1786599, Length=227, Percent_Identity=33.920704845815, Blast_Score=117, Evalue=5e-28,
Organism=Escherichia coli, GI2367329, Length=239, Percent_Identity=35.1464435146443, Blast_Score=113, Evalue=1e-26,
Organism=Escherichia coli, GI1786911, Length=208, Percent_Identity=33.6538461538462, Blast_Score=105, Evalue=2e-24,
Organism=Escherichia coli, GI1788394, Length=229, Percent_Identity=33.1877729257642, Blast_Score=104, Evalue=5e-24,
Organism=Escherichia coli, GI1789809, Length=234, Percent_Identity=30.3418803418803, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI1787229, Length=232, Percent_Identity=29.7413793103448, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1790863, Length=233, Percent_Identity=27.4678111587983, Blast_Score=88, Evalue=6e-19,
Organism=Escherichia coli, GI1788550, Length=167, Percent_Identity=31.1377245508982, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI145693140, Length=238, Percent_Identity=25.6302521008403, Blast_Score=67, Evalue=8e-13,
Organism=Escherichia coli, GI1790437, Length=149, Percent_Identity=31.5436241610738, Blast_Score=65, Evalue=6e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001867
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C [H]

EC number: NA

Molecular weight: Translated: 26302; Mature: 26302

Theoretical pI: Translated: 6.15; Mature: 6.15

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVLLVEDDAMIGESVKVALRQEGFTVDWVRDGDAGLDAASDQHGPRADGGYDVVLLDLG
CEEEEECCCCHHCHHHHEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEECC
LPRRPGLDVLKTLRARNVRTPVLILTARDAVADRVAGLNAGADDYLIKPFDLQELAARMH
CCCCCCHHHHHHHHHCCCCCCEEEEEECHHHHHHHHCCCCCCCCCEECCCCHHHHHHHHH
ALVRRAEGRAEPVLRYGDIMLNPATREATQAGASVRLSAREFALLSALMARPGKVWSVPQ
HHHHHHCCCCCCEEEECCEEECCCHHHHHHCCCEEEEHHHHHHHHHHHHHCCCCCCCCHH
LQERLYGWDDEVGSNTVEVYIHALRRKFGAALIRNIRGVGYVIPAESGAEQDTKGGPEGA
HHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCC
MH
CC
>Mature Secondary Structure
MRVLLVEDDAMIGESVKVALRQEGFTVDWVRDGDAGLDAASDQHGPRADGGYDVVLLDLG
CEEEEECCCCHHCHHHHEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEECC
LPRRPGLDVLKTLRARNVRTPVLILTARDAVADRVAGLNAGADDYLIKPFDLQELAARMH
CCCCCCHHHHHHHHHCCCCCCEEEEEECHHHHHHHHCCCCCCCCCEECCCCHHHHHHHHH
ALVRRAEGRAEPVLRYGDIMLNPATREATQAGASVRLSAREFALLSALMARPGKVWSVPQ
HHHHHHCCCCCCEEEECCEEECCCHHHHHHCCCEEEEHHHHHHHHHHHHHCCCCCCCCHH
LQERLYGWDDEVGSNTVEVYIHALRRKFGAALIRNIRGVGYVIPAESGAEQDTKGGPEGA
HHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCC
MH
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11677608; 12644504 [H]