Click here to switch to the map view.

The map label for this gene is ytfH [C]

Identifier: 94313572

GI number: 94313572

Start: 1281140

End: 1281673

Strand: Direct

Name: ytfH [C]

Synonym: Rmet_4650

Alternate gene names: 94313572

Gene position: 1281140-1281673 (Clockwise)

Preceding gene: 94313569

Following gene: 94313573

Centisome position: 49.65

GC content: 65.92

Gene sequence:

>534_bases
ATGTTCAGAAAGTCACATCGCAATGCGCCCTGCCCAATGGCACGTGGCATCGAACGTGTCGGAGACCCCTGGACCTTCCT
GATCCTGCGTGAGGCGTTCTACGGCACGACCCGCTTCGACGAGTTCCAGAAAGTGCTTGGCATCGCGCCGAACATGCTGA
CGCGACGACTGAACAGTCTGGTGGACGACGGGCTGCTGACCCGACGCCAGTACAGCGCCCACCCGCCCCGCGACGAATAC
CTGCTGACCGATCTCGGGCGCGATTTCCGTCCCGTGCTGCTGGCCCTGCTGGCATGGGGGAGTCGCCACTTCTCACAGGA
GGGCGAACTGGTACGTCTCATGGATCGCCGCACCGGCCACCCGGTGGAATTCGCGCTGGTGGATACGGCCACCGGCACCC
CCATCACCGCATCCGATCACTACCTCGCGCCGGGCCCCGCCGCGGGTCCGGGCCTGCGCGCGCGCCTGGAACGCGCCGCT
CAGCATCAGCAATCCGATTCGAATACCACCGCGCCCACGATGGGCGCGTGCTAA

Upstream 100 bases:

>100_bases
CATGCAGCGGTTCTCGAAACTGTTTCTTGCATGATGATAGTTGCTAGCCTAGACTAACTTTCATATTGATAGCAACGTCT
TTTTTCGAGGACGGACTGCC

Downstream 100 bases:

>100_bases
CCATGGAACCACGGAGCACAGTCATGACAAGCACCACCACCGCGAGCCGCGCCCCCGCCGAGGCCGCTCCATCCACGGCA
GCCCCGGCCAGGCGTGGCAC

Product: putative transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 177; Mature: 177

Protein sequence:

>177_residues
MFRKSHRNAPCPMARGIERVGDPWTFLILREAFYGTTRFDEFQKVLGIAPNMLTRRLNSLVDDGLLTRRQYSAHPPRDEY
LLTDLGRDFRPVLLALLAWGSRHFSQEGELVRLMDRRTGHPVEFALVDTATGTPITASDHYLAPGPAAGPGLRARLERAA
QHQQSDSNTTAPTMGAC

Sequences:

>Translated_177_residues
MFRKSHRNAPCPMARGIERVGDPWTFLILREAFYGTTRFDEFQKVLGIAPNMLTRRLNSLVDDGLLTRRQYSAHPPRDEY
LLTDLGRDFRPVLLALLAWGSRHFSQEGELVRLMDRRTGHPVEFALVDTATGTPITASDHYLAPGPAAGPGLRARLERAA
QHQQSDSNTTAPTMGAC
>Mature_177_residues
MFRKSHRNAPCPMARGIERVGDPWTFLILREAFYGTTRFDEFQKVLGIAPNMLTRRLNSLVDDGLLTRRQYSAHPPRDEY
LLTDLGRDFRPVLLALLAWGSRHFSQEGELVRLMDRRTGHPVEFALVDTATGTPITASDHYLAPGPAAGPGLRARLERAA
QHQQSDSNTTAPTMGAC

Specific function: Unknown

COG id: COG1733

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH hxlR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002577
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01638 DUF24 [H]

EC number: NA

Molecular weight: Translated: 19786; Mature: 19786

Theoretical pI: Translated: 9.22; Mature: 9.22

Prosite motif: PS51118 HTH_HXLR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFRKSHRNAPCPMARGIERVGDPWTFLILREAFYGTTRFDEFQKVLGIAPNMLTRRLNSL
CCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHH
VDDGLLTRRQYSAHPPRDEYLLTDLGRDFRPVLLALLAWGSRHFSQEGELVRLMDRRTGH
HHHHHHHHHHHCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCC
PVEFALVDTATGTPITASDHYLAPGPAAGPGLRARLERAAQHQQSDSNTTAPTMGAC
CEEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure
MFRKSHRNAPCPMARGIERVGDPWTFLILREAFYGTTRFDEFQKVLGIAPNMLTRRLNSL
CCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHH
VDDGLLTRRQYSAHPPRDEYLLTDLGRDFRPVLLALLAWGSRHFSQEGELVRLMDRRTGH
HHHHHHHHHHHCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCC
PVEFALVDTATGTPITASDHYLAPGPAAGPGLRARLERAAQHQQSDSNTTAPTMGAC
CEEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]