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The map label for this gene is yncD [H]

Identifier: 94313487

GI number: 94313487

Start: 1175242

End: 1177443

Strand: Direct

Name: yncD [H]

Synonym: Rmet_4565

Alternate gene names: 94313487

Gene position: 1175242-1177443 (Clockwise)

Preceding gene: 94313486

Following gene: 94313496

Centisome position: 45.55

GC content: 62.44

Gene sequence:

>2202_bases
ATGGCGCACGGATTCTCCCCTCCGTATCCTTGCGGTCGAGCCAAAATAAGAGCATATCTGGCCCACGTTGAATCCTCGGC
GTGGGCCTATCGACCGCAAGCAATGCAACGACAAAAAAAATGGCGCCGCGCAGCGGCGCTTCCTGCCGCCGCACTGTCTG
GTGTGGCCTTCGCCCAAACCGTTCCGGCAAGCGTTCCTGCCGAGATTCCAACCCTTCCTCCTGTCACCGCCACGGCTGCC
GCGGCGGGTTCGTTGACCGCCCCGGGCATCGCGCAGCAGCGCCAGTCATTGTTCCAGTCGGCTGGATCCGTGGGCTTTGT
TGATGCGGACTCCTATAGCAACACGTACGCCAGCGACCTGCGCGATGTGCTCAAGGATGCACCGGGTGTTTACGTACAGG
AACGTTACGGCCAGGAGTTGCGGCTGTCGATCCGTGGCTCGGGAATTGCGCGCGGCTACCACACGCGTGGCCTGGAAATC
CTGCAGGACGGCGTGCCGACCAACTTTGCCGACGGCAGCGGCGACTTCTACCAGATCGATCCGCTCGGTCTTTCGGCCGC
CGAAGTCTACAAGGGCGGCAACGGGCTGGCGTATGGCAGCACCACCCTGGGCGGCGCCATCAACTTCACTACGCCCACCG
CGCTGACCGCCGACGCGCCAAACATGGTCCGCCTGGATGGGGGCAGTTTCGGCACCGTGCGCGGCAGTGGCCAGGTGTCA
CGGCAGATCGGCAACTGGGACTTCCTGGTCAACGCCACGGTCAGCCATTCCGACGGCTATCGCAATCATGAACGCGGCCA
GTACGAGCAGCTCAACGCCAATGTCGGCTACCGGTTCAGCCCGGCGGTGGAGACGCGCTTCTACTTTGGCGCCTATATCG
TCGATCAGTTGCTGCCCGGCACGCTCTCTCTGAACGATGCGCTGAACAATCCGCGCATGGCATCGCCGAGCGCGCTGGCG
GGCGACCAGGCACGCAACACGCGCACCGAGCGCCTGGCCAATGTCACCACCATCAAGCTCGACAGCGGCCAGATCGACTT
CACTACCTGGGCGATCCACAAGAGCCTGTATCACCCGATCTTCCAGGTGATCGACCAGGACTACTGGACCTATGGCTTCG
CGCCCCGCTACACGGGCGAATTCGCGCTTGGCGGCATGCGTAACCAGTTGATCGCCGGGATGCGATTCTTTGGCGGCAAC
AACGACGCGCGCCAGTACGTCAACGTCAATGGCAATCGTGGCGCGCAGACGCTGAATTCGGCGCAGGATGCCTACAACTA
CGAGCTCTATCTCGAAGACCGCCTCTATGTGCTGCCCACCGTGGCGCTGATGGCTGGCGCCAAGGCGTACCGCAACCGCC
GCGAGTACAAGGACTATGGTGGCCTGCCTACCAATCCAACGCCGAAGTCGGACGCCACGAGCTATAGCGGCGTGAATCCG
AAGTTTGGCGTGCTGTGGGAACCAAAGAAGAACGTCCAGGCGTTCATCGACATCACCCGTAGCGCCGATGTCCCCGATTT
CACGGACCTGAACCAGACGATCGGCATGACACAGCAGTTCGTGCCACTGGCCGCCCAGCACGGCTGGACGCTGGAACTCG
GCACGCGCGGCCAGCAGGACCGTTTCGGCTGGGATCTGACGCTGTACCGCTCTCTGGTGCGCGACCAGCTGCTGCAGTAC
ACGGTCAGCCCCGACATCCCCGCGTCAACGTTCAACGCGAACAAGACGACCCTGCAAGGCGTGGAGCTTGGCGCGAATGT
AGACGTGCTACGCAACGTGTTCGGCAGCAGCGACAAGGTCAATGTGTCCCAACTCTGGAACTACAGTGACTTCCGCTTCG
ACAACGATCCGGTCTATGGCAACAACCGGATCGCCGGGGTGCCGCAGCACGTGCTGCGCACGACGCTGGCCTATAGCCGA
AACTCGCGCCTGCGCGTGGCGGGCACAATCGACTGGGTGCCGACCGGTGCATGGGTGGACTACGCCAACACGCTCAAGGT
GCCAAGCTACGTGCTGTTCGGTATCGAGGCGAGCTACGAGTTCGAGCGTGGCGTGACGCTGTTCCTCGATGCCCGCAACC
TGACGGACAAACGCTATATCAGCGATTTCAGCACCGTCACGGATGCGCGGACGGCCAATACGTCGGTGTTCTATCCGGGC
AGCGGCCGCGCGTTCTACGCGGGGATCAAGTACAAGTTCTAA

Upstream 100 bases:

>100_bases
AGCGCGGCAGCGGCGCACGCTCACGGTACTGCCTGCGACCCTAACTGCGCGGGACAACTTTCGATATAAGGCAAGAAGGT
CCGTTGCGTCGCTGTGTCGC

Downstream 100 bases:

>100_bases
GGGTAGGCATTGCGCTCACTGCGCTCGGATGAGGGCCTCACCACGCCCTTGCCGGGCGTGGCGCGGGAAATCAGTTCACG
CGCTGGACGGCGGGCGGCAT

Product: TonB-dependent receptor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 733; Mature: 732

Protein sequence:

>733_residues
MAHGFSPPYPCGRAKIRAYLAHVESSAWAYRPQAMQRQKKWRRAAALPAAALSGVAFAQTVPASVPAEIPTLPPVTATAA
AAGSLTAPGIAQQRQSLFQSAGSVGFVDADSYSNTYASDLRDVLKDAPGVYVQERYGQELRLSIRGSGIARGYHTRGLEI
LQDGVPTNFADGSGDFYQIDPLGLSAAEVYKGGNGLAYGSTTLGGAINFTTPTALTADAPNMVRLDGGSFGTVRGSGQVS
RQIGNWDFLVNATVSHSDGYRNHERGQYEQLNANVGYRFSPAVETRFYFGAYIVDQLLPGTLSLNDALNNPRMASPSALA
GDQARNTRTERLANVTTIKLDSGQIDFTTWAIHKSLYHPIFQVIDQDYWTYGFAPRYTGEFALGGMRNQLIAGMRFFGGN
NDARQYVNVNGNRGAQTLNSAQDAYNYELYLEDRLYVLPTVALMAGAKAYRNRREYKDYGGLPTNPTPKSDATSYSGVNP
KFGVLWEPKKNVQAFIDITRSADVPDFTDLNQTIGMTQQFVPLAAQHGWTLELGTRGQQDRFGWDLTLYRSLVRDQLLQY
TVSPDIPASTFNANKTTLQGVELGANVDVLRNVFGSSDKVNVSQLWNYSDFRFDNDPVYGNNRIAGVPQHVLRTTLAYSR
NSRLRVAGTIDWVPTGAWVDYANTLKVPSYVLFGIEASYEFERGVTLFLDARNLTDKRYISDFSTVTDARTANTSVFYPG
SGRAFYAGIKYKF

Sequences:

>Translated_733_residues
MAHGFSPPYPCGRAKIRAYLAHVESSAWAYRPQAMQRQKKWRRAAALPAAALSGVAFAQTVPASVPAEIPTLPPVTATAA
AAGSLTAPGIAQQRQSLFQSAGSVGFVDADSYSNTYASDLRDVLKDAPGVYVQERYGQELRLSIRGSGIARGYHTRGLEI
LQDGVPTNFADGSGDFYQIDPLGLSAAEVYKGGNGLAYGSTTLGGAINFTTPTALTADAPNMVRLDGGSFGTVRGSGQVS
RQIGNWDFLVNATVSHSDGYRNHERGQYEQLNANVGYRFSPAVETRFYFGAYIVDQLLPGTLSLNDALNNPRMASPSALA
GDQARNTRTERLANVTTIKLDSGQIDFTTWAIHKSLYHPIFQVIDQDYWTYGFAPRYTGEFALGGMRNQLIAGMRFFGGN
NDARQYVNVNGNRGAQTLNSAQDAYNYELYLEDRLYVLPTVALMAGAKAYRNRREYKDYGGLPTNPTPKSDATSYSGVNP
KFGVLWEPKKNVQAFIDITRSADVPDFTDLNQTIGMTQQFVPLAAQHGWTLELGTRGQQDRFGWDLTLYRSLVRDQLLQY
TVSPDIPASTFNANKTTLQGVELGANVDVLRNVFGSSDKVNVSQLWNYSDFRFDNDPVYGNNRIAGVPQHVLRTTLAYSR
NSRLRVAGTIDWVPTGAWVDYANTLKVPSYVLFGIEASYEFERGVTLFLDARNLTDKRYISDFSTVTDARTANTSVFYPG
SGRAFYAGIKYKF
>Mature_732_residues
AHGFSPPYPCGRAKIRAYLAHVESSAWAYRPQAMQRQKKWRRAAALPAAALSGVAFAQTVPASVPAEIPTLPPVTATAAA
AGSLTAPGIAQQRQSLFQSAGSVGFVDADSYSNTYASDLRDVLKDAPGVYVQERYGQELRLSIRGSGIARGYHTRGLEIL
QDGVPTNFADGSGDFYQIDPLGLSAAEVYKGGNGLAYGSTTLGGAINFTTPTALTADAPNMVRLDGGSFGTVRGSGQVSR
QIGNWDFLVNATVSHSDGYRNHERGQYEQLNANVGYRFSPAVETRFYFGAYIVDQLLPGTLSLNDALNNPRMASPSALAG
DQARNTRTERLANVTTIKLDSGQIDFTTWAIHKSLYHPIFQVIDQDYWTYGFAPRYTGEFALGGMRNQLIAGMRFFGGNN
DARQYVNVNGNRGAQTLNSAQDAYNYELYLEDRLYVLPTVALMAGAKAYRNRREYKDYGGLPTNPTPKSDATSYSGVNPK
FGVLWEPKKNVQAFIDITRSADVPDFTDLNQTIGMTQQFVPLAAQHGWTLELGTRGQQDRFGWDLTLYRSLVRDQLLQYT
VSPDIPASTFNANKTTLQGVELGANVDVLRNVFGSSDKVNVSQLWNYSDFRFDNDPVYGNNRIAGVPQHVLRTTLAYSRN
SRLRVAGTIDWVPTGAWVDYANTLKVPSYVLFGIEASYEFERGVTLFLDARNLTDKRYISDFSTVTDARTANTSVFYPGS
GRAFYAGIKYKF

Specific function: Probable receptor, tonB-dependent [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tonB-dependent receptor family [H]

Homologues:

Organism=Escherichia coli, GI1787723, Length=716, Percent_Identity=24.3016759776536, Blast_Score=110, Evalue=3e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012910
- InterPro:   IPR000531 [H]

Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]

EC number: NA

Molecular weight: Translated: 80532; Mature: 80400

Theoretical pI: Translated: 9.03; Mature: 9.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.1 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAHGFSPPYPCGRAKIRAYLAHVESSAWAYRPQAMQRQKKWRRAAALPAAALSGVAFAQT
CCCCCCCCCCCCHHHHHHHHHHHHCCCCEECHHHHHHHHHHHHHHCCCHHHHHCHHHHHH
VPASVPAEIPTLPPVTATAAAAGSLTAPGIAQQRQSLFQSAGSVGFVDADSYSNTYASDL
CCCCCCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCHHHHHH
RDVLKDAPGVYVQERYGQELRLSIRGSGIARGYHTRGLEILQDGVPTNFADGSGDFYQID
HHHHHHCCCEEEEHHCCCEEEEEEECCCEECCHHHCCHHHHHCCCCCCCCCCCCCEEEEC
PLGLSAAEVYKGGNGLAYGSTTLGGAINFTTPTALTADAPNMVRLDGGSFGTVRGSGQVS
CCCCCHHHHHCCCCCEEECCCCCCCEEEECCCCEEECCCCCEEEECCCCEEEEECCCHHH
RQIGNWDFLVNATVSHSDGYRNHERGQYEQLNANVGYRFSPAVETRFYFGAYIVDQLLPG
HHCCCEEEEEEEEEECCCCCCCCCCCCHHEECCCCCEEECCCHHHHHHHHHHHHHHHCCC
TLSLNDALNNPRMASPSALAGDQARNTRTERLANVTTIKLDSGQIDFTTWAIHKSLYHPI
CEEEHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCEEEEEECCCCEEEEHHHHHHHHHHHH
FQVIDQDYWTYGFAPRYTGEFALGGMRNQLIAGMRFFGGNNDARQYVNVNGNRGAQTLNS
HHHHCCCCCEECCCCCCCCCEEECCHHHHHHHHHHEECCCCCCCEEEECCCCCCHHHHHH
AQDAYNYELYLEDRLYVLPTVALMAGAKAYRNRREYKDYGGLPTNPTPKSDATSYSGVNP
HHHCCEEEEEECCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
KFGVLWEPKKNVQAFIDITRSADVPDFTDLNQTIGMTQQFVPLAAQHGWTLELGTRGQQD
CCCEEECCCCCCEEEEEEECCCCCCCCCCCHHHHCCCHHHHHHHHCCCCEEEECCCCCCC
RFGWDLTLYRSLVRDQLLQYTVSPDIPASTFNANKTTLQGVELGANVDVLRNVFGSSDKV
CCCCHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHCCCCCE
NVSQLWNYSDFRFDNDPVYGNNRIAGVPQHVLRTTLAYSRNSRLRVAGTIDWVPTGAWVD
EHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEEEEEECCCCCCC
YANTLKVPSYVLFGIEASYEFERGVTLFLDARNLTDKRYISDFSTVTDARTANTSVFYPG
CCCCCCCCCEEEEEEECCEECCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEECC
SGRAFYAGIKYKF
CCCEEEEEEEECC
>Mature Secondary Structure 
AHGFSPPYPCGRAKIRAYLAHVESSAWAYRPQAMQRQKKWRRAAALPAAALSGVAFAQT
CCCCCCCCCCCHHHHHHHHHHHHCCCCEECHHHHHHHHHHHHHHCCCHHHHHCHHHHHH
VPASVPAEIPTLPPVTATAAAAGSLTAPGIAQQRQSLFQSAGSVGFVDADSYSNTYASDL
CCCCCCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCHHHHHH
RDVLKDAPGVYVQERYGQELRLSIRGSGIARGYHTRGLEILQDGVPTNFADGSGDFYQID
HHHHHHCCCEEEEHHCCCEEEEEEECCCEECCHHHCCHHHHHCCCCCCCCCCCCCEEEEC
PLGLSAAEVYKGGNGLAYGSTTLGGAINFTTPTALTADAPNMVRLDGGSFGTVRGSGQVS
CCCCCHHHHHCCCCCEEECCCCCCCEEEECCCCEEECCCCCEEEECCCCEEEEECCCHHH
RQIGNWDFLVNATVSHSDGYRNHERGQYEQLNANVGYRFSPAVETRFYFGAYIVDQLLPG
HHCCCEEEEEEEEEECCCCCCCCCCCCHHEECCCCCEEECCCHHHHHHHHHHHHHHHCCC
TLSLNDALNNPRMASPSALAGDQARNTRTERLANVTTIKLDSGQIDFTTWAIHKSLYHPI
CEEEHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCEEEEEECCCCEEEEHHHHHHHHHHHH
FQVIDQDYWTYGFAPRYTGEFALGGMRNQLIAGMRFFGGNNDARQYVNVNGNRGAQTLNS
HHHHCCCCCEECCCCCCCCCEEECCHHHHHHHHHHEECCCCCCCEEEECCCCCCHHHHHH
AQDAYNYELYLEDRLYVLPTVALMAGAKAYRNRREYKDYGGLPTNPTPKSDATSYSGVNP
HHHCCEEEEEECCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
KFGVLWEPKKNVQAFIDITRSADVPDFTDLNQTIGMTQQFVPLAAQHGWTLELGTRGQQD
CCCEEECCCCCCEEEEEEECCCCCCCCCCCHHHHCCCHHHHHHHHCCCCEEEECCCCCCC
RFGWDLTLYRSLVRDQLLQYTVSPDIPASTFNANKTTLQGVELGANVDVLRNVFGSSDKV
CCCCHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHCCCCCE
NVSQLWNYSDFRFDNDPVYGNNRIAGVPQHVLRTTLAYSRNSRLRVAGTIDWVPTGAWVD
EHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEEEEEECCCCCCC
YANTLKVPSYVLFGIEASYEFERGVTLFLDARNLTDKRYISDFSTVTDARTANTSVFYPG
CCCCCCCCCEEEEEEECCEECCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEECC
SGRAFYAGIKYKF
CCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]