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The map label for this gene is nocR [H]

Identifier: 94313268

GI number: 94313268

Start: 939521

End: 940426

Strand: Reverse

Name: nocR [H]

Synonym: Rmet_4343

Alternate gene names: 94313268

Gene position: 940426-939521 (Counterclockwise)

Preceding gene: 94313272

Following gene: 94313267

Centisome position: 36.45

GC content: 59.71

Gene sequence:

>906_bases
ATGCAACTGAATCCCCGCCAACTCGAAGCGTTCCGTAGTGTCATGGTGTCCGGCAGCATGACCGTGGCCGCCGAACGGCT
CAAGATCAGCCAGCCAGCGGTGAGTGCGCTTATCAGGGACCTCGAAAAGAGACTGGAAATCCGCCTGTTCCGGCGTGAAG
GCAATCGCCTGATTCCGGGTGCCGAAGCCCAGCGATTGTTCCGCGAAGTGGACCGGTTCTACCAGGGCATGGAGCAGATC
GAGCGTGTGGCGCTCGATCTGAAGTCCGCTCGCATCGGTACCCTGCGTGTTGCGTCCATGCATACGCTGGGATTGAGCCT
GCTCAGCGAAAGCGTCAGGCAGTTCTCACTCTCCCGCCCAGAACTGGCGATCTCGCTGGACGTCAGGAATTCTCTAGGCG
TCATGGAGCTCGCCGCAGCGCACCAGATCGATATCGGATTCGTTCAGATGTCCGGCGATGAGTACCCCGGGGTCGATGTT
CTCCCGCTACCAAGCGTCGCGGCAGTCTGCGTACTCCCGCGTGGCCATGCTTTGGCCCGCAAGAGGTCATTGAAGATTAC
CGATCTGCAGGATGAGCCGCTTATCTCGCTGAATCGCAATAGCCCGGTGCGGATGCGATTGGAGATGGAACTCGACGCTG
CTGGCGTGACCTGCAAGCGCTCGGTGGTCACATCGCTCGGTCACGTGGCATGCAGCCTGGTGGCAGGCGGACTTGGTTTG
ACTGTCGTTGATCCCTTCACCGCGCGCAGAGTGCGTGATCCAGGTGTGGTCTGGCGTCCATTGTCGCCGGCCGTACAGTT
CCATTTCTCCATGGTCCTGCCGTCCCATCAGCCGCGATCGAAGGTTGTGGAAGACTTTATCAAGCTGGTCAAAGAACAAT
TCAAGGCGAGCGTCGCCTCGTCCTGA

Upstream 100 bases:

>100_bases
CGGTTGGACGCGCATAAGAGAAATTTATGGGCGCGGCAGCGTGCTACGTTGTAGGCTCGCCCCCCAAAAGTCATGGCATC
AGTCTTCGCCTTAGCTACCT

Downstream 100 bases:

>100_bases
TTCGCCGCGAGCCGCGGTGAAACCACGCATAAGTAGAAGATTTCCTTATGCGCGTCCAACCGTGTCTGTAGTTGTGCCTC
GCGGACCAAAAATTCATCAT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 301; Mature: 301

Protein sequence:

>301_residues
MQLNPRQLEAFRSVMVSGSMTVAAERLKISQPAVSALIRDLEKRLEIRLFRREGNRLIPGAEAQRLFREVDRFYQGMEQI
ERVALDLKSARIGTLRVASMHTLGLSLLSESVRQFSLSRPELAISLDVRNSLGVMELAAAHQIDIGFVQMSGDEYPGVDV
LPLPSVAAVCVLPRGHALARKRSLKITDLQDEPLISLNRNSPVRMRLEMELDAAGVTCKRSVVTSLGHVACSLVAGGLGL
TVVDPFTARRVRDPGVVWRPLSPAVQFHFSMVLPSHQPRSKVVEDFIKLVKEQFKASVASS

Sequences:

>Translated_301_residues
MQLNPRQLEAFRSVMVSGSMTVAAERLKISQPAVSALIRDLEKRLEIRLFRREGNRLIPGAEAQRLFREVDRFYQGMEQI
ERVALDLKSARIGTLRVASMHTLGLSLLSESVRQFSLSRPELAISLDVRNSLGVMELAAAHQIDIGFVQMSGDEYPGVDV
LPLPSVAAVCVLPRGHALARKRSLKITDLQDEPLISLNRNSPVRMRLEMELDAAGVTCKRSVVTSLGHVACSLVAGGLGL
TVVDPFTARRVRDPGVVWRPLSPAVQFHFSMVLPSHQPRSKVVEDFIKLVKEQFKASVASS
>Mature_301_residues
MQLNPRQLEAFRSVMVSGSMTVAAERLKISQPAVSALIRDLEKRLEIRLFRREGNRLIPGAEAQRLFREVDRFYQGMEQI
ERVALDLKSARIGTLRVASMHTLGLSLLSESVRQFSLSRPELAISLDVRNSLGVMELAAAHQIDIGFVQMSGDEYPGVDV
LPLPSVAAVCVLPRGHALARKRSLKITDLQDEPLISLNRNSPVRMRLEMELDAAGVTCKRSVVTSLGHVACSLVAGGLGL
TVVDPFTARRVRDPGVVWRPLSPAVQFHFSMVLPSHQPRSKVVEDFIKLVKEQFKASVASS

Specific function: Positive regulatory protein for the noc operon involved in nopaline catabolism and uptake [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789204, Length=284, Percent_Identity=34.1549295774648, Blast_Score=145, Evalue=3e-36,
Organism=Escherichia coli, GI1788481, Length=149, Percent_Identity=34.2281879194631, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI1787530, Length=243, Percent_Identity=25.1028806584362, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI157672245, Length=213, Percent_Identity=26.2910798122066, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI145693105, Length=238, Percent_Identity=23.5294117647059, Blast_Score=68, Evalue=6e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33253; Mature: 33253

Theoretical pI: Translated: 10.50; Mature: 10.50

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQLNPRQLEAFRSVMVSGSMTVAAERLKISQPAVSALIRDLEKRLEIRLFRREGNRLIPG
CCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
AEAQRLFREVDRFYQGMEQIERVALDLKSARIGTLRVASMHTLGLSLLSESVRQFSLSRP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHCCCCC
ELAISLDVRNSLGVMELAAAHQIDIGFVQMSGDEYPGVDVLPLPSVAAVCVLPRGHALAR
CEEEEEECCCCCCHHHHHHHHEEEEEEEEECCCCCCCCCEECCCCHHHEEECCCCHHHHH
KRSLKITDLQDEPLISLNRNSPVRMRLEMELDAAGVTCKRSVVTSLGHVACSLVAGGLGL
HCCCEEECCCCCCCEEECCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCE
TVVDPFTARRVRDPGVVWRPLSPAVQFHFSMVLPSHQPRSKVVEDFIKLVKEQFKASVAS
EEECCHHHHHCCCCCEEEECCCHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHHHCC
S
C
>Mature Secondary Structure
MQLNPRQLEAFRSVMVSGSMTVAAERLKISQPAVSALIRDLEKRLEIRLFRREGNRLIPG
CCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
AEAQRLFREVDRFYQGMEQIERVALDLKSARIGTLRVASMHTLGLSLLSESVRQFSLSRP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHCCCCC
ELAISLDVRNSLGVMELAAAHQIDIGFVQMSGDEYPGVDVLPLPSVAAVCVLPRGHALAR
CEEEEEECCCCCCHHHHHHHHEEEEEEEEECCCCCCCCCEECCCCHHHEEECCCCHHHHH
KRSLKITDLQDEPLISLNRNSPVRMRLEMELDAAGVTCKRSVVTSLGHVACSLVAGGLGL
HCCCEEECCCCCCCEEECCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCE
TVVDPFTARRVRDPGVVWRPLSPAVQFHFSMVLPSHQPRSKVVEDFIKLVKEQFKASVAS
EEECCHHHHHCCCCCEEEECCCHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHHHCC
S
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1799698; 11743193; 11743194 [H]