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The map label for this gene is yggS [C]

Identifier: 94313040

GI number: 94313040

Start: 684482

End: 685342

Strand: Direct

Name: yggS [C]

Synonym: Rmet_4113

Alternate gene names: 94313040

Gene position: 684482-685342 (Clockwise)

Preceding gene: 94313039

Following gene: 94313041

Centisome position: 26.53

GC content: 65.74

Gene sequence:

>861_bases
ATGCACACAGATCCCCCTGATTCCGTACATCCGACGCAGCCGCTCCACGACCTGCACAACCGCTGGCCACAGGCCGAGTC
CGTGGAGGACTTCCGTCACAACCTCGCGGCCGTTCATGCGCGCATCGCGGCGGCCTGTCACCGCGTTGGCCGCGATCCTG
CCGGTGTGCGGCTGTTGCCCGTCAGCAAGGCCAAGCCGGAGGCGAGCATTCGTCTGGCCCATGCGGCCGGTTGTCGTCTG
CTCGGCGAAAACAAGCCGCAGGAGGCCTACCGAAAGTGGGAGGCACTGGCGGATCTGGAGGACCTGCAGTGGTCGGTGAT
TGGCCACCTGCAAACCAACAAGGCCAAGCTCGCGGCGCGTTTCGCCACCGAGTTCCAGGCGCTGGACAGCCTGCGCGTGG
CCGAGGCACTGGACCGCCGTCTGCAGATCGAGGGCAGGGCGCTCGATGTGTTCGTGCAGGTCAACACGTCCGGCGAGGCG
AGCAAATTTGGTCTGCATCCCGATGAGGTGCCGGGCTTCCTGCGCGCGCTGCCTGCATTCTCCGGCTTGCGCGTGCGCGG
GCTCATGACGCTGGCGCTGCTGTCGGCGGAATCCGAGCGGGTACGCCAGTGCTTCGTGCTGCTGCGCGAGCTTCGCGAGC
GGCTACGGCAGGATGCGCCCGTCGGCATCGGGCTCGATGAGCTTTCGATGGGTATGTCCGGGGATTTCGAGATTGCCATC
GAGGAAGGCGCCACGGTCGTGCGCGTCGGTCAGGCGATCTTTGGCGCCAGATCAACGCCCGATAGCTTTTACTGGCCAGA
GGCGGAAGCGGGTGACTCTACATTGAGCGCTGCTCACTCCGGCCGTCAAGGCGAACGTTGA

Upstream 100 bases:

>100_bases
CCGTCCTGTGTCGTGATAGCATTTGTCCTATGACAATGCTGCGACGGGAGCTGCATGTCCGCTCACCGCTGATATCCCGA
TATGCGCCGAGGCCCAGGCC

Downstream 100 bases:

>100_bases
TGGGACACGCTGCATTGCATCGCAAGGAAATGAGCCATGTTTGGTGAGACAGGTACCGGGGACGCGCTGCGCCCCATCTT
CATGGACGTTGTGTCCGTAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 286; Mature: 286

Protein sequence:

>286_residues
MHTDPPDSVHPTQPLHDLHNRWPQAESVEDFRHNLAAVHARIAAACHRVGRDPAGVRLLPVSKAKPEASIRLAHAAGCRL
LGENKPQEAYRKWEALADLEDLQWSVIGHLQTNKAKLAARFATEFQALDSLRVAEALDRRLQIEGRALDVFVQVNTSGEA
SKFGLHPDEVPGFLRALPAFSGLRVRGLMTLALLSAESERVRQCFVLLRELRERLRQDAPVGIGLDELSMGMSGDFEIAI
EEGATVVRVGQAIFGARSTPDSFYWPEAEAGDSTLSAAHSGRQGER

Sequences:

>Translated_286_residues
MHTDPPDSVHPTQPLHDLHNRWPQAESVEDFRHNLAAVHARIAAACHRVGRDPAGVRLLPVSKAKPEASIRLAHAAGCRL
LGENKPQEAYRKWEALADLEDLQWSVIGHLQTNKAKLAARFATEFQALDSLRVAEALDRRLQIEGRALDVFVQVNTSGEA
SKFGLHPDEVPGFLRALPAFSGLRVRGLMTLALLSAESERVRQCFVLLRELRERLRQDAPVGIGLDELSMGMSGDFEIAI
EEGATVVRVGQAIFGARSTPDSFYWPEAEAGDSTLSAAHSGRQGER
>Mature_286_residues
MHTDPPDSVHPTQPLHDLHNRWPQAESVEDFRHNLAAVHARIAAACHRVGRDPAGVRLLPVSKAKPEASIRLAHAAGCRL
LGENKPQEAYRKWEALADLEDLQWSVIGHLQTNKAKLAARFATEFQALDSLRVAEALDRRLQIEGRALDVFVQVNTSGEA
SKFGLHPDEVPGFLRALPAFSGLRVRGLMTLALLSAESERVRQCFVLLRELRERLRQDAPVGIGLDELSMGMSGDFEIAI
EEGATVVRVGQAIFGARSTPDSFYWPEAEAGDSTLSAAHSGRQGER

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=243, Percent_Identity=36.6255144032922, Blast_Score=116, Evalue=3e-26,
Organism=Escherichia coli, GI1789321, Length=239, Percent_Identity=41.4225941422594, Blast_Score=140, Evalue=1e-34,
Organism=Caenorhabditis elegans, GI17533025, Length=220, Percent_Identity=33.1818181818182, Blast_Score=87, Evalue=1e-17,
Organism=Saccharomyces cerevisiae, GI6319435, Length=220, Percent_Identity=36.3636363636364, Blast_Score=110, Evalue=3e-25,
Organism=Drosophila melanogaster, GI45550861, Length=212, Percent_Identity=34.4339622641509, Blast_Score=103, Evalue=2e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 31441; Mature: 31441

Theoretical pI: Translated: 6.59; Mature: 6.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHTDPPDSVHPTQPLHDLHNRWPQAESVEDFRHNLAAVHARIAAACHRVGRDPAGVRLLP
CCCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEE
VSKAKPEASIRLAHAAGCRLLGENKPQEAYRKWEALADLEDLQWSVIGHLQTNKAKLAAR
CCCCCCCHHEEEEHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHECCCHHHHHHH
FATEFQALDSLRVAEALDRRLQIEGRALDVFVQVNTSGEASKFGLHPDEVPGFLRALPAF
HHHHHHHHHHHHHHHHHHHHHEECCEEEEEEEEECCCCCCHHCCCCHHHHHHHHHHHHHH
SGLRVRGLMTLALLSAESERVRQCFVLLRELRERLRQDAPVGIGLDELSMGMSGDFEIAI
CCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCEEEEE
EEGATVVRVGQAIFGARSTPDSFYWPEAEAGDSTLSAAHSGRQGER
CCCCEEEEHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCC
>Mature Secondary Structure
MHTDPPDSVHPTQPLHDLHNRWPQAESVEDFRHNLAAVHARIAAACHRVGRDPAGVRLLP
CCCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEE
VSKAKPEASIRLAHAAGCRLLGENKPQEAYRKWEALADLEDLQWSVIGHLQTNKAKLAAR
CCCCCCCHHEEEEHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHECCCHHHHHHH
FATEFQALDSLRVAEALDRRLQIEGRALDVFVQVNTSGEASKFGLHPDEVPGFLRALPAF
HHHHHHHHHHHHHHHHHHHHHEECCEEEEEEEEECCCCCCHHCCCCHHHHHHHHHHHHHH
SGLRVRGLMTLALLSAESERVRQCFVLLRELRERLRQDAPVGIGLDELSMGMSGDFEIAI
CCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCEEEEE
EEGATVVRVGQAIFGARSTPDSFYWPEAEAGDSTLSAAHSGRQGER
CCCCEEEEHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]