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The map label for this gene is ydcI [H]

Identifier: 94312940

GI number: 94312940

Start: 582586

End: 583539

Strand: Reverse

Name: ydcI [H]

Synonym: Rmet_4012

Alternate gene names: 94312940

Gene position: 583539-582586 (Counterclockwise)

Preceding gene: 94312945

Following gene: 94312939

Centisome position: 22.62

GC content: 68.97

Gene sequence:

>954_bases
ATGCATAGTAGCTCGCCGTCACGTGAAGCCCGCATCGACACGTTCCGCAGCCGGATCCGGTTACGCCATCTGCACTGCTT
CGTCGCTGTGGCGCAAACCCAGCATCTGGGCCGGGCCGGGGAGCGCCTCGGCCTGACACAGCCGGCCGTCTCCAAGACGC
TGACCGAACTTGAGGAACTGGTCGGTGCCCGGCTGCTGGTGCGGCAGCGTGCAGGCACGGACCTGACCGCCGCCGGGATG
CGCTTTCTGCGCCAGGCGCTGCGCGTGCTCGAGGACCTCGACGCCGTGGCGGACAGCCTGGCCGGCGCTGACGCAGCGCG
GCAGGAGCGCATTCGCGTGGGTGCGCTGCCGAGCATCGTCCCGGCTTTGCTGCTCGAGGCAGTGACCGACTTCCGCGCGA
ATCACCCGGAAGTCGGACTTGCGGTGCAAAGCGGCATGAACCGGACGCTGATCGACCTGCTCAAGGCTGACGTGCTCGAT
GTGGTGATCGGCCGCATGGACGACCCCGGCGCGATGGAGGGGCTGTGGTTCGAATCCCTCGCAGCCGAACCACTGGTGCT
CGCGGTGCGGGCGGGCCATCCGCTTGCCGGCAATGCTCGCCCGACGATGCGCGACGTGCTGGCCTGGCCGATGGTGGTGC
CAGCGGTGGGCTCGATCCCGCGCCACAGCACCGAGAGCCTGCTGGCGCGACACGGATTCGCCTTGCCGGCCGGCTGTCTG
GAAACGGCCGATGGCTACTTGGGCCGGCTCGTGACACAGCAAGGCGACAGCGTCTGGGCGGCACCGCTTTCGGCAACGCG
CCGCGCCGTCGCGGCCGGCGAACTGGTGCTGCTGTCCTTCGACACGCAAGGCACCGAAGAGCCGATCGGATTGCTCCGCC
GGAGCGATCGCACACTTGAGCCGGTGGCCGAAGCATTCGCCGATACGATCCGCCGCATCGCGGCCAGCCGATAG

Upstream 100 bases:

>100_bases
TGTCTCCGTGGTTGTGTTGTGTGAGTGAATGGGCTCGACTGTATTCAACGCCATAAGTCATGTAAATTGAGTTTTTCCGC
AATTTGAATGATTTTTTGTT

Downstream 100 bases:

>100_bases
GGTTGCCGTCGGCACTCTCTGCCGCCTGCCCGGTCTTTTCCGATATTCCGCATTCCCCGCGCGCCCTTTTCCGCTGAGGC
AGCGCGGCGGATACGCGGGC

Product: putative LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 317; Mature: 317

Protein sequence:

>317_residues
MHSSSPSREARIDTFRSRIRLRHLHCFVAVAQTQHLGRAGERLGLTQPAVSKTLTELEELVGARLLVRQRAGTDLTAAGM
RFLRQALRVLEDLDAVADSLAGADAARQERIRVGALPSIVPALLLEAVTDFRANHPEVGLAVQSGMNRTLIDLLKADVLD
VVIGRMDDPGAMEGLWFESLAAEPLVLAVRAGHPLAGNARPTMRDVLAWPMVVPAVGSIPRHSTESLLARHGFALPAGCL
ETADGYLGRLVTQQGDSVWAAPLSATRRAVAAGELVLLSFDTQGTEEPIGLLRRSDRTLEPVAEAFADTIRRIAASR

Sequences:

>Translated_317_residues
MHSSSPSREARIDTFRSRIRLRHLHCFVAVAQTQHLGRAGERLGLTQPAVSKTLTELEELVGARLLVRQRAGTDLTAAGM
RFLRQALRVLEDLDAVADSLAGADAARQERIRVGALPSIVPALLLEAVTDFRANHPEVGLAVQSGMNRTLIDLLKADVLD
VVIGRMDDPGAMEGLWFESLAAEPLVLAVRAGHPLAGNARPTMRDVLAWPMVVPAVGSIPRHSTESLLARHGFALPAGCL
ETADGYLGRLVTQQGDSVWAAPLSATRRAVAAGELVLLSFDTQGTEEPIGLLRRSDRTLEPVAEAFADTIRRIAASR
>Mature_317_residues
MHSSSPSREARIDTFRSRIRLRHLHCFVAVAQTQHLGRAGERLGLTQPAVSKTLTELEELVGARLLVRQRAGTDLTAAGM
RFLRQALRVLEDLDAVADSLAGADAARQERIRVGALPSIVPALLLEAVTDFRANHPEVGLAVQSGMNRTLIDLLKADVLD
VVIGRMDDPGAMEGLWFESLAAEPLVLAVRAGHPLAGNARPTMRDVLAWPMVVPAVGSIPRHSTESLLARHGFALPAGCL
ETADGYLGRLVTQQGDSVWAAPLSATRRAVAAGELVLLSFDTQGTEEPIGLLRRSDRTLEPVAEAFADTIRRIAASR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081904, Length=298, Percent_Identity=41.6107382550336, Blast_Score=215, Evalue=3e-57,
Organism=Escherichia coli, GI1787879, Length=210, Percent_Identity=36.1904761904762, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1787601, Length=212, Percent_Identity=29.2452830188679, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1788887, Length=179, Percent_Identity=35.195530726257, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1788748, Length=304, Percent_Identity=26.3157894736842, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI145693105, Length=291, Percent_Identity=24.0549828178694, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI1789506, Length=179, Percent_Identity=24.0223463687151, Blast_Score=71, Evalue=9e-14,
Organism=Escherichia coli, GI1786401, Length=310, Percent_Identity=26.4516129032258, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI157672245, Length=175, Percent_Identity=30.8571428571429, Blast_Score=68, Evalue=8e-13,
Organism=Escherichia coli, GI1790399, Length=188, Percent_Identity=25.531914893617, Blast_Score=66, Evalue=4e-12,
Organism=Escherichia coli, GI1790262, Length=270, Percent_Identity=26.6666666666667, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1789204, Length=179, Percent_Identity=27.3743016759777, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34123; Mature: 34123

Theoretical pI: Translated: 7.28; Mature: 7.28

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHSSSPSREARIDTFRSRIRLRHLHCFVAVAQTQHLGRAGERLGLTQPAVSKTLTELEEL
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
VGARLLVRQRAGTDLTAAGMRFLRQALRVLEDLDAVADSLAGADAARQERIRVGALPSIV
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHH
PALLLEAVTDFRANHPEVGLAVQSGMNRTLIDLLKADVLDVVIGRMDDPGAMEGLWFESL
HHHHHHHHHHHHCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
AAEPLVLAVRAGHPLAGNARPTMRDVLAWPMVVPAVGSIPRHSTESLLARHGFALPAGCL
CCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCHHHH
ETADGYLGRLVTQQGDSVWAAPLSATRRAVAAGELVLLSFDTQGTEEPIGLLRRSDRTLE
HHHHHHHHHHHHHCCCCEEECCHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHCCCCHH
PVAEAFADTIRRIAASR
HHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MHSSSPSREARIDTFRSRIRLRHLHCFVAVAQTQHLGRAGERLGLTQPAVSKTLTELEEL
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
VGARLLVRQRAGTDLTAAGMRFLRQALRVLEDLDAVADSLAGADAARQERIRVGALPSIV
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHH
PALLLEAVTDFRANHPEVGLAVQSGMNRTLIDLLKADVLDVVIGRMDDPGAMEGLWFESL
HHHHHHHHHHHHCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
AAEPLVLAVRAGHPLAGNARPTMRDVLAWPMVVPAVGSIPRHSTESLLARHGFALPAGCL
CCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCHHHH
ETADGYLGRLVTQQGDSVWAAPLSATRRAVAAGELVLLSFDTQGTEEPIGLLRRSDRTLE
HHHHHHHHHHHHHCCCCEEECCHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHCCCCHH
PVAEAFADTIRRIAASR
HHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]