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The map label for this gene is pobR [C]

Identifier: 94312945

GI number: 94312945

Start: 587625

End: 588554

Strand: Reverse

Name: pobR [C]

Synonym: Rmet_4017

Alternate gene names: 94312945

Gene position: 588554-587625 (Counterclockwise)

Preceding gene: 94312949

Following gene: 94312940

Centisome position: 22.81

GC content: 65.59

Gene sequence:

>930_bases
ATGAGAACCGTTCCGACCTACTCGCTCTATGGCGTGAATTCCTCGGAGCCCCTGCTGGATCAGCTCCATTTCGAGTCCAT
CGCCTCGCGCAGCCAGCTCTACGCATGGGAGATCAAGCCACACCGGCACGAACGCTTCCTTCAATTTCTGTACATCCATC
GCGGCAGTGGGGAGGCCCTGCTGGAGGGCCGCAAGGAACGACTTGCAAGCGGGTCGCTGATCACGGTGCCACCGCACCAC
GTGCACGGTTTCGTGTTCGCGCCCGACGTCGACGGCATCATCGTGACGATGACCGACACCTACCTGCGCACGTTGCTGGC
CGGCTTGCCTGGGACGGTGCCGCTGTTCGAGCACCCACGGCATGACCGCGTGGCGCGACGCCACGCGCTGGCGGGCACGC
TGGCGCTGTTCAGGGAGGAGATGGAATCGGTATCGCCGTGGCGCGGCGCATCGCTATCGGCGTTGCTGACGCTGATGCTG
GTGGGCATCGCGCGCATCGCCGAGGCGTCGGCCCCGGCGAAGACGCAGGCCGGCAGCCGGCCGGCCCGGCACTTCCGGCA
GTTCCAGCAACTGTTGGAGACCGACTATCGCGAACAGAATGACATCGCGTACTACGCCGGGGCGATCGGCGTCACCCCGA
CGCAGCTCAACCGCATCTGCCGCCAACTGGCCGGGCATAGCGCATTGCAGCTCATTCACGCACGCGTGCTGGCCGAAGCG
CAGCGCGACCTGCTCTTCAGCGATCTCGACATCAAGCAGATCGCGATGACACTCGGCTTCTCGGACGCAGGCTACTTCTC
GCGCTTCTTCGCGCGGCTGACCGGGCAGACGCCCACCGCATTCCGTGAATCGGGCCGCGCCCGCCTGCCAGCGTTCGCAA
TCAAGGACGCCTTGAACGCGACAGATATGGCAGGCGCGGCGGACGCCTAA

Upstream 100 bases:

>100_bases
GTTGGGCCTAACGATAGAGCCTCGCGCGCCCTGCAGGAATGGACAGATCGAACCATCGAAGTGACAATCCGAACATTCAG
GGTTCACCCGATATGCCCCC

Downstream 100 bases:

>100_bases
GCATCAACCGCGTGCGCGATCCAATTCTGCAAACACTTCCCCGGCCATGTGGAATGCCGAGTTGGCCGCCGGCACACCGC
AATAGATCGCGGTCTGCAAC

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: AraC Family Transcriptional Regulator; Transcriptional Regulator; Helix-Turn-Helix Domain-Containing Protein; Transcriptional Regulator PobR; 4-Hydroxyphenylacetate Catabolism Regulatory Protein HpaA; Transcriptional Regulatory Protein; Regulator Of 4HPA-Hydroxylase Operon; AraC-Family Transcriptional Regulator; Helix-Turn-Helix- Domain Containing Protein AraC Type; PobR Regulator; Transcriptional Regulator AraC Family Protein; Transcriptional Regulator Arac Family; Transcriptional Regulator Pobr Arac Family Protein; AraC Protein; AraC Family Regulatory Protein; AraC Family Transcriptional Regulatory Protein; Transcription Regulator AraC-Type; Transcriptional Regulatory Protein AraC-Type; AraC Family Transcription Regulator; AraC/XylS Family Transcription Factor; AraC-Type Regulatory Protein; AraC-Type Transcription Regulator; Bacterial Regulatory Helix-Turn-Helix Protein; Helix-Turn-Helix AraC Type; Regulator Of 4hpa-Hydroxylase Operon; Transcriptional Regulator Protein; AraC Family Transcription Regulator Protein; Helix-Turn-Helix AraC Domain Protein

Number of amino acids: Translated: 309; Mature: 309

Protein sequence:

>309_residues
MRTVPTYSLYGVNSSEPLLDQLHFESIASRSQLYAWEIKPHRHERFLQFLYIHRGSGEALLEGRKERLASGSLITVPPHH
VHGFVFAPDVDGIIVTMTDTYLRTLLAGLPGTVPLFEHPRHDRVARRHALAGTLALFREEMESVSPWRGASLSALLTLML
VGIARIAEASAPAKTQAGSRPARHFRQFQQLLETDYREQNDIAYYAGAIGVTPTQLNRICRQLAGHSALQLIHARVLAEA
QRDLLFSDLDIKQIAMTLGFSDAGYFSRFFARLTGQTPTAFRESGRARLPAFAIKDALNATDMAGAADA

Sequences:

>Translated_309_residues
MRTVPTYSLYGVNSSEPLLDQLHFESIASRSQLYAWEIKPHRHERFLQFLYIHRGSGEALLEGRKERLASGSLITVPPHH
VHGFVFAPDVDGIIVTMTDTYLRTLLAGLPGTVPLFEHPRHDRVARRHALAGTLALFREEMESVSPWRGASLSALLTLML
VGIARIAEASAPAKTQAGSRPARHFRQFQQLLETDYREQNDIAYYAGAIGVTPTQLNRICRQLAGHSALQLIHARVLAEA
QRDLLFSDLDIKQIAMTLGFSDAGYFSRFFARLTGQTPTAFRESGRARLPAFAIKDALNATDMAGAADA
>Mature_309_residues
MRTVPTYSLYGVNSSEPLLDQLHFESIASRSQLYAWEIKPHRHERFLQFLYIHRGSGEALLEGRKERLASGSLITVPPHH
VHGFVFAPDVDGIIVTMTDTYLRTLLAGLPGTVPLFEHPRHDRVARRHALAGTLALFREEMESVSPWRGASLSALLTLML
VGIARIAEASAPAKTQAGSRPARHFRQFQQLLETDYREQNDIAYYAGAIGVTPTQLNRICRQLAGHSALQLIHARVLAEA
QRDLLFSDLDIKQIAMTLGFSDAGYFSRFFARLTGQTPTAFRESGRARLPAFAIKDALNATDMAGAADA

Specific function: This Protein Controls The Expression Of At Least Six Genes That Are Involved In The Transport And Catabolism Of L-Arabinose. It Regulates Initiation Of Transcription Of The Arabad Operon And It Also Controls Its Own Synthesis. The L- Arabinose Operon Dis

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 34276; Mature: 34276

Theoretical pI: Translated: 9.28; Mature: 9.28

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTVPTYSLYGVNSSEPLLDQLHFESIASRSQLYAWEIKPHRHERFLQFLYIHRGSGEAL
CCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCCCHHH
LEGRKERLASGSLITVPPHHVHGFVFAPDVDGIIVTMTDTYLRTLLAGLPGTVPLFEHPR
HHHHHHHHCCCCEEEECCHHHEEEEECCCCCCEEEEECHHHHHHHHHCCCCCCCCCCCCC
HDRVARRHALAGTLALFREEMESVSPWRGASLSALLTLMLVGIARIAEASAPAKTQAGSR
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHCCCCC
PARHFRQFQQLLETDYREQNDIAYYAGAIGVTPTQLNRICRQLAGHSALQLIHARVLAEA
HHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHH
QRDLLFSDLDIKQIAMTLGFSDAGYFSRFFARLTGQTPTAFRESGRARLPAFAIKDALNA
HHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHCCCCCCCHHHHHHHCCH
TDMAGAADA
HHCCCCCCC
>Mature Secondary Structure
MRTVPTYSLYGVNSSEPLLDQLHFESIASRSQLYAWEIKPHRHERFLQFLYIHRGSGEAL
CCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCCCHHH
LEGRKERLASGSLITVPPHHVHGFVFAPDVDGIIVTMTDTYLRTLLAGLPGTVPLFEHPR
HHHHHHHHCCCCEEEECCHHHEEEEECCCCCCEEEEECHHHHHHHHHCCCCCCCCCCCCC
HDRVARRHALAGTLALFREEMESVSPWRGASLSALLTLMLVGIARIAEASAPAKTQAGSR
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHCCCCC
PARHFRQFQQLLETDYREQNDIAYYAGAIGVTPTQLNRICRQLAGHSALQLIHARVLAEA
HHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHH
QRDLLFSDLDIKQIAMTLGFSDAGYFSRFFARLTGQTPTAFRESGRARLPAFAIKDALNA
HHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHCCCCCCCHHHHHHHCCH
TDMAGAADA
HHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA