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The map label for this gene is atpH

Identifier: 94312428

GI number: 94312428

Start: 3788932

End: 3789474

Strand: Reverse

Name: atpH

Synonym: Rmet_3497

Alternate gene names: 94312428

Gene position: 3789474-3788932 (Counterclockwise)

Preceding gene: 94312429

Following gene: 94312427

Centisome position: 96.47

GC content: 63.72

Gene sequence:

>543_bases
ATGGCTGAAACCGCAACCATTGCCCGTCCCTACGCGGAGGCGCTCTTCCGCGTCGCCAGTGAAGCCGGTGCAGGCAACCT
GGGTGCATGGTCCGAGCTGGTGTCGGAAATGGGGCAGGTTGCCGCCAATCCCGACATGCAGGCGCTCGCCACCGACCCGA
ACATTTCCGGCGACAAGCTCGAGGAAGTGTTCCTGTCGGTGCTTAAGAGCCCGGTCAACGACGAAGCTCGCCGCTTCGTG
AAGCTGCTGGTGGAAAACAGCCGCCTGACAGCGTTGCCGGAAATTGCCGAACAGTTCCATGCGCTCAAGAACGCCCGCGA
GGGCTCGTCCGACGTCGAGATCACCAGTGCATTCCCGCTGGACGCCTCGCAGACGAACGAACTGGTCGCCGCACTCGAAC
GCAAGTTCGGCCGCAAGCTGTACGCAAAGGTGGCGGTGGACCCGTCGCTGATCGGTGGCGTAAGCGTCAAGGTCGGTGAC
GAAGTGCTCGACACCTCCGTGCGCTCGCGTCTGGCTGCCATGCAAGCCGCGCTGACCGCCTGA

Upstream 100 bases:

>100_bases
CCGTGCTGGCCGTGAAGGGTGCAGAGCAGATCCTCAAGCGTGAAGTGAACGCGCAGGTCCACGCAGACCTGCTCAATCAA
CTCAAGGCTGAGCTCTAATC

Downstream 100 bases:

>100_bases
CCGCAACGGCCGACGGATTGAAGAATTAGGAGCATTGTGATGCAACTGAACCCCTCAGAAATCAGCGAGCTGATCAAGTC
CCGCATCTCGGGTCTTGGCG

Product: F0F1 ATP synthase subunit delta

Products: ADP; phosphate; H+

Alternate protein names: ATP synthase F(1) sector subunit delta; F-type ATPase subunit delta; F-ATPase subunit delta

Number of amino acids: Translated: 180; Mature: 179

Protein sequence:

>180_residues
MAETATIARPYAEALFRVASEAGAGNLGAWSELVSEMGQVAANPDMQALATDPNISGDKLEEVFLSVLKSPVNDEARRFV
KLLVENSRLTALPEIAEQFHALKNAREGSSDVEITSAFPLDASQTNELVAALERKFGRKLYAKVAVDPSLIGGVSVKVGD
EVLDTSVRSRLAAMQAALTA

Sequences:

>Translated_180_residues
MAETATIARPYAEALFRVASEAGAGNLGAWSELVSEMGQVAANPDMQALATDPNISGDKLEEVFLSVLKSPVNDEARRFV
KLLVENSRLTALPEIAEQFHALKNAREGSSDVEITSAFPLDASQTNELVAALERKFGRKLYAKVAVDPSLIGGVSVKVGD
EVLDTSVRSRLAAMQAALTA
>Mature_179_residues
AETATIARPYAEALFRVASEAGAGNLGAWSELVSEMGQVAANPDMQALATDPNISGDKLEEVFLSVLKSPVNDEARRFVK
LLVENSRLTALPEIAEQFHALKNAREGSSDVEITSAFPLDASQTNELVAALERKFGRKLYAKVAVDPSLIGGVSVKVGDE
VLDTSVRSRLAAMQAALTA

Specific function: This protein is part of the stalk that links CF(0) to CF(1). It either transmits conformational changes from CF(0) to CF(1) or is implicated in proton conduction

COG id: COG0712

COG function: function code C; F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein)

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase delta chain family

Homologues:

Organism=Escherichia coli, GI1790173, Length=171, Percent_Identity=32.7485380116959, Blast_Score=104, Evalue=3e-24,
Organism=Caenorhabditis elegans, GI71984710, Length=139, Percent_Identity=33.0935251798561, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI71984717, Length=139, Percent_Identity=33.0935251798561, Blast_Score=72, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): ATPD_RALME (Q1LHK7)

Other databases:

- EMBL:   CP000352
- RefSeq:   YP_585638.1
- ProteinModelPortal:   Q1LHK7
- SMR:   Q1LHK7
- STRING:   Q1LHK7
- GeneID:   4040345
- GenomeReviews:   CP000352_GR
- KEGG:   rme:Rmet_3497
- eggNOG:   COG0712
- HOGENOM:   HBG668108
- OMA:   ASLERKF
- PhylomeDB:   Q1LHK7
- ProtClustDB:   PRK05758
- BioCyc:   RMET266264:RMET_3497-MONOMER
- HAMAP:   MF_01416
- InterPro:   IPR000711
- Gene3D:   G3DSA:1.10.520.20
- PANTHER:   PTHR11910
- PRINTS:   PR00125
- TIGRFAMs:   TIGR01145

Pfam domain/function: PF00213 OSCP; SSF47928 ATPsynt_OSCP

EC number: 3.6.3.14

Molecular weight: Translated: 19145; Mature: 19014

Theoretical pI: Translated: 4.54; Mature: 4.54

Prosite motif: PS00389 ATPASE_DELTA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAETATIARPYAEALFRVASEAGAGNLGAWSELVSEMGQVAANPDMQALATDPNISGDKL
CCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHH
EEVFLSVLKSPVNDEARRFVKLLVENSRLTALPEIAEQFHALKNAREGSSDVEITSAFPL
HHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCC
DASQTNELVAALERKFGRKLYAKVAVDPSLIGGVSVKVGDEVLDTSVRSRLAAMQAALTA
CCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
AETATIARPYAEALFRVASEAGAGNLGAWSELVSEMGQVAANPDMQALATDPNISGDKL
CCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHH
EEVFLSVLKSPVNDEARRFVKLLVENSRLTALPEIAEQFHALKNAREGSSDVEITSAFPL
HHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCC
DASQTNELVAALERKFGRKLYAKVAVDPSLIGGVSVKVGDEVLDTSVRSRLAAMQAALTA
CCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: Borate; diphosphate; HCO3- [C]

Metal ions: Co2+; Fe2+; Mn2+; Zn2+ [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; H2O; H+

Specific reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out)

General reaction: Phosphorous acid anhydride hydrolysis [C]

Inhibitor: Ca2+; CN-; Efrapeptin; Ethidiumbromide; Guanidines analogs; Oligomycin; Quercetin; Trialkyl tin derivatives; Venturicidin [C]

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA