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The map label for this gene is yggS [C]

Identifier: 94311869

GI number: 94311869

Start: 3192137

End: 3192826

Strand: Direct

Name: yggS [C]

Synonym: Rmet_2937

Alternate gene names: 94311869

Gene position: 3192137-3192826 (Clockwise)

Preceding gene: 94311865

Following gene: 94311870

Centisome position: 81.26

GC content: 66.67

Gene sequence:

>690_bases
ATGTCTGTAATCGCCGCCAACTTGCAAGCCGTGAAGAATGACATCGCGGCGGCTGCACAACAAGCCAGCCGGGACCCTTC
CGGGGTGACCCTGCTGGCCGTCTCCAAGACCGTCTCACCCGATCGCGTGCGCGAGGCCTTCGAGGCCGGACAGCCAGCGT
TTGGCGAGAACTACGTGCAGGAAGGTCTGGACAAGATCGCCGCGCTGGGCGATCTGCGCAGCCGCATCGCGTGGCACTTC
ATCGGCCCGCTGCAAAGCAACAAGACCCGCCCCGTGGCCGAGCAGTTCGACTGGGTCCATGCCATCGACCGCCTGAAGAT
CGCGGAGCGGCTGTCAGCGCAGCGGCCGGCGGATCTGGCGCCCCTGCAGGTCTGCATTCAGGTCAATATCAGCAACGAAG
ACACCAAGAGTGGCGTGCTTCCCGAGGAAGTGCTGGCGCTGGCGCGCGCCGTGGCCGCATTGCCGAACCTGCGATTGCGC
GGCCTGATGGCGATTCCCGCGCCGGCAGCGGACCTGGCCGCTCAGCGCGTGCCATTTGCCGCGCTGCGCCGGTTGCTCGA
GGAACTGCGACAGTCCGGACTGGATGTGGATACGCTCTCGATGGGGATGTCCGCCGACATGCCCGCTGCCATCGCCGAGG
GCGCCACGATGGTGCGGATCGGCACCGCGATATTCGGCGCGCGAGGCTGA

Upstream 100 bases:

>100_bases
TCTTGACCGCAAAAGCCAATAGCTGCGCGATGTCCATCTATAATGACCCCACCCTAAAAGACTGCTTTTTGTTGTACTTC
TTTGGTATGTTCGCCGGATT

Downstream 100 bases:

>100_bases
CGGCACCCGTCGCTTCACACCCTCCCCGCTCAACAGATTCATCAACGCCAGCCGACATGCGTCGTGCCGGCAGACAGGAA
CCATGATGCTCGACTCCCTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 229; Mature: 228

Protein sequence:

>229_residues
MSVIAANLQAVKNDIAAAAQQASRDPSGVTLLAVSKTVSPDRVREAFEAGQPAFGENYVQEGLDKIAALGDLRSRIAWHF
IGPLQSNKTRPVAEQFDWVHAIDRLKIAERLSAQRPADLAPLQVCIQVNISNEDTKSGVLPEEVLALARAVAALPNLRLR
GLMAIPAPAADLAAQRVPFAALRRLLEELRQSGLDVDTLSMGMSADMPAAIAEGATMVRIGTAIFGARG

Sequences:

>Translated_229_residues
MSVIAANLQAVKNDIAAAAQQASRDPSGVTLLAVSKTVSPDRVREAFEAGQPAFGENYVQEGLDKIAALGDLRSRIAWHF
IGPLQSNKTRPVAEQFDWVHAIDRLKIAERLSAQRPADLAPLQVCIQVNISNEDTKSGVLPEEVLALARAVAALPNLRLR
GLMAIPAPAADLAAQRVPFAALRRLLEELRQSGLDVDTLSMGMSADMPAAIAEGATMVRIGTAIFGARG
>Mature_228_residues
SVIAANLQAVKNDIAAAAQQASRDPSGVTLLAVSKTVSPDRVREAFEAGQPAFGENYVQEGLDKIAALGDLRSRIAWHFI
GPLQSNKTRPVAEQFDWVHAIDRLKIAERLSAQRPADLAPLQVCIQVNISNEDTKSGVLPEEVLALARAVAALPNLRLRG
LMAIPAPAADLAAQRVPFAALRRLLEELRQSGLDVDTLSMGMSADMPAAIAEGATMVRIGTAIFGARG

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=239, Percent_Identity=39.3305439330544, Blast_Score=130, Evalue=8e-31,
Organism=Escherichia coli, GI1789321, Length=232, Percent_Identity=57.3275862068966, Blast_Score=245, Evalue=2e-66,
Organism=Caenorhabditis elegans, GI17533025, Length=222, Percent_Identity=36.9369369369369, Blast_Score=120, Evalue=7e-28,
Organism=Saccharomyces cerevisiae, GI6319435, Length=238, Percent_Identity=34.8739495798319, Blast_Score=113, Evalue=3e-26,
Organism=Drosophila melanogaster, GI45550861, Length=212, Percent_Identity=39.622641509434, Blast_Score=124, Evalue=4e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 24364; Mature: 24233

Theoretical pI: Translated: 6.55; Mature: 6.55

Prosite motif: PS01211 UPF0001

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVIAANLQAVKNDIAAAAQQASRDPSGVTLLAVSKTVSPDRVREAFEAGQPAFGENYVQ
CCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHCCCCCCCHHHHH
EGLDKIAALGDLRSRIAWHFIGPLQSNKTRPVAEQFDWVHAIDRLKIAERLSAQRPADLA
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
PLQVCIQVNISNEDTKSGVLPEEVLALARAVAALPNLRLRGLMAIPAPAADLAAQRVPFA
CEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCHHCEEEECCCCHHHHHHHCCCHH
ALRRLLEELRQSGLDVDTLSMGMSADMPAAIAEGATMVRIGTAIFGARG
HHHHHHHHHHHCCCCCHHHHCCCCCCCCHHHHCCCHHEEHHHHHHCCCC
>Mature Secondary Structure 
SVIAANLQAVKNDIAAAAQQASRDPSGVTLLAVSKTVSPDRVREAFEAGQPAFGENYVQ
CHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHCCCCCCCHHHHH
EGLDKIAALGDLRSRIAWHFIGPLQSNKTRPVAEQFDWVHAIDRLKIAERLSAQRPADLA
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
PLQVCIQVNISNEDTKSGVLPEEVLALARAVAALPNLRLRGLMAIPAPAADLAAQRVPFA
CEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCHHCEEEECCCCHHHHHHHCCCHH
ALRRLLEELRQSGLDVDTLSMGMSADMPAAIAEGATMVRIGTAIFGARG
HHHHHHHHHHHCCCCCHHHHCCCCCCCCHHHHCCCHHEEHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11248100 [H]