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The map label for this gene is sun1 [H]

Identifier: 94311809

GI number: 94311809

Start: 3127972

End: 3129372

Strand: Reverse

Name: sun1 [H]

Synonym: Rmet_2877

Alternate gene names: 94311809

Gene position: 3129372-3127972 (Counterclockwise)

Preceding gene: 94311810

Following gene: 94311808

Centisome position: 79.67

GC content: 64.88

Gene sequence:

>1401_bases
ATGAGTCGCAATCCCGCAACTTCCCAAGACAATCGCCAGCGCTCGCGTCCGAGCAAAGGCAAGGCCAGCCCGATCCGCAA
GTCGCCCAACGCCCGGCAGCAGGGCGCTGACGGCGCGCCGCGCACGCCCGGCGGCCTGCAGGCTTTCCATCTGCAACATA
TCGACCGACTGCTCGGCAAGGTGCTGTTGTTCGCGCGTCCGTCCGACGCGGTGGTCAGCCATTACTTCCGCGAAAATAGC
AAACTTGGTCATCGCGACCGAGGCATCATCGCTGAAGCAATTTTTGCAGTGTTGCGCCGACGCGTCGAATTTGGTCAATT
TGCCGAAAGTGGCACGGGTTCGGCCACGCGCCGCCTCGGGCTGCTGGGCCTGGCCGCGACGCTCGGCCGCGATGTGCTTT
CGCCGTTCCTTCATCCCGACGAAGCTGTCTGGCTCGACCGCCTGACCACGATCGAGCGCTCCAGCCTGGCGCCGCGCGTG
CGCGCCAACCTGCCCGAGTGGCTGTATGACGATCTGGTGGCGCGTCATGGCGAGGCATTCACTGCTGCGCTTGGCGATGC
CTGGCTGCGGCCCGCGCCGCTCGACCTGCGCGTGAACACCGCCAAGCTGTCGCGTGAAGAGGCACTGGCCGAACTCCAGA
CTGCCGGTATCGCCGCCGAACTGGCCCCGATGGCGCCGGCTGGCATCCGCCTCAAGGGCAAGCCCGCGTTGAACCAGCTC
CCGCTGTTCATCAACGGTGGCGTGGAAGTGCAGGATGAAGGCAGTCAACTGCTGTGCCATCTGCTTGCGCCGCGTCGCGG
CGAGATGGTGGTTGACTTCTGCGCGGGCGCTGGCGGCAAGACGCTGGCGCTGGGTGTGGCCATGCGCTCGACTGGGCGGC
TCTATGCATTCGATGTGTCGGAGAAGCGCCTGGCCAATCTGAAGCCGCGTCTGGCTCGTAGTGGTCTGTCGAACGTGCAC
CCGGTGCTGATCGACTCCGAGCGCGATGCCAAGGTCAAGCGCCTGGCCGGCAAGATCGATCGTGTGCTGGTGGACGCGCC
TTGCAGCGGCCTGGGTACCCTGCGCCGTAATCCCGATCTGAAGTGGCGTCAGACGCCGGAATCGGTTGTGGAACTCACTG
CGAAGCAAGCGGCCATCCTCGATGCCGCGGCAAAGCTGGTGAAGGGCGGCGGCCGTGTCGTGTACGCCACGTGCAGCGTG
CTGGAGGCCGAAAACGAGGCAATCATCCGTGATTTCCTGGCATCCCACGAGAATTTCCGACTTGTGCCGGTGAGCGAAGT
GCTGGCCGAGCAGAAGATCGAGGTGCCGGAGTTGCCGGCGGAAGGCGGCATGTTGGCGCTCTATCCGCATATCCATCAGA
CCGATGGCTTCTTCGCCGCTGTTCTGGAGCGCACGCGCTGA

Upstream 100 bases:

>100_bases
AAGACCGTCTGCACGTGCAGGACGGTGTCGTTCAAGTAGTTCAACCGGCCGAGCCCCAATGGTTCATGGCCATCTCGCCC
CAAGCGGCAGGAAAACAGCC

Downstream 100 bases:

>100_bases
TGGCGGATAGCACGCTGATGAACCCCGATACGCTCGCGGAGCTGAAACGATCGCACGCGATGTTCGGCAAGATGGTGCAG
GACCTGATCCACGATGCGGG

Product: tRNA and rRNA cytosine-C5-methylase

Products: NA

Alternate protein names: rRNA (cytosine-C(5)-)-methyltransferase rsmB [H]

Number of amino acids: Translated: 466; Mature: 465

Protein sequence:

>466_residues
MSRNPATSQDNRQRSRPSKGKASPIRKSPNARQQGADGAPRTPGGLQAFHLQHIDRLLGKVLLFARPSDAVVSHYFRENS
KLGHRDRGIIAEAIFAVLRRRVEFGQFAESGTGSATRRLGLLGLAATLGRDVLSPFLHPDEAVWLDRLTTIERSSLAPRV
RANLPEWLYDDLVARHGEAFTAALGDAWLRPAPLDLRVNTAKLSREEALAELQTAGIAAELAPMAPAGIRLKGKPALNQL
PLFINGGVEVQDEGSQLLCHLLAPRRGEMVVDFCAGAGGKTLALGVAMRSTGRLYAFDVSEKRLANLKPRLARSGLSNVH
PVLIDSERDAKVKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQTPESVVELTAKQAAILDAAAKLVKGGGRVVYATCSV
LEAENEAIIRDFLASHENFRLVPVSEVLAEQKIEVPELPAEGGMLALYPHIHQTDGFFAAVLERTR

Sequences:

>Translated_466_residues
MSRNPATSQDNRQRSRPSKGKASPIRKSPNARQQGADGAPRTPGGLQAFHLQHIDRLLGKVLLFARPSDAVVSHYFRENS
KLGHRDRGIIAEAIFAVLRRRVEFGQFAESGTGSATRRLGLLGLAATLGRDVLSPFLHPDEAVWLDRLTTIERSSLAPRV
RANLPEWLYDDLVARHGEAFTAALGDAWLRPAPLDLRVNTAKLSREEALAELQTAGIAAELAPMAPAGIRLKGKPALNQL
PLFINGGVEVQDEGSQLLCHLLAPRRGEMVVDFCAGAGGKTLALGVAMRSTGRLYAFDVSEKRLANLKPRLARSGLSNVH
PVLIDSERDAKVKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQTPESVVELTAKQAAILDAAAKLVKGGGRVVYATCSV
LEAENEAIIRDFLASHENFRLVPVSEVLAEQKIEVPELPAEGGMLALYPHIHQTDGFFAAVLERTR
>Mature_465_residues
SRNPATSQDNRQRSRPSKGKASPIRKSPNARQQGADGAPRTPGGLQAFHLQHIDRLLGKVLLFARPSDAVVSHYFRENSK
LGHRDRGIIAEAIFAVLRRRVEFGQFAESGTGSATRRLGLLGLAATLGRDVLSPFLHPDEAVWLDRLTTIERSSLAPRVR
ANLPEWLYDDLVARHGEAFTAALGDAWLRPAPLDLRVNTAKLSREEALAELQTAGIAAELAPMAPAGIRLKGKPALNQLP
LFINGGVEVQDEGSQLLCHLLAPRRGEMVVDFCAGAGGKTLALGVAMRSTGRLYAFDVSEKRLANLKPRLARSGLSNVHP
VLIDSERDAKVKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQTPESVVELTAKQAAILDAAAKLVKGGGRVVYATCSVL
EAENEAIIRDFLASHENFRLVPVSEVLAEQKIEVPELPAEGGMLALYPHIHQTDGFFAAVLERTR

Specific function: Unknown

COG id: COG0144

COG function: function code J; tRNA and rRNA cytosine-C5-methylases

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. RsmB/NOP family [H]

Homologues:

Organism=Homo sapiens, GI76150625, Length=284, Percent_Identity=29.5774647887324, Blast_Score=124, Evalue=2e-28,
Organism=Homo sapiens, GI76150623, Length=284, Percent_Identity=29.5774647887324, Blast_Score=124, Evalue=2e-28,
Organism=Homo sapiens, GI23199998, Length=300, Percent_Identity=29.3333333333333, Blast_Score=104, Evalue=1e-22,
Organism=Homo sapiens, GI270288818, Length=300, Percent_Identity=29.3333333333333, Blast_Score=104, Evalue=2e-22,
Organism=Homo sapiens, GI270288816, Length=300, Percent_Identity=29.3333333333333, Blast_Score=104, Evalue=2e-22,
Organism=Homo sapiens, GI8922322, Length=300, Percent_Identity=29.3333333333333, Blast_Score=103, Evalue=3e-22,
Organism=Homo sapiens, GI32698918, Length=230, Percent_Identity=27.8260869565217, Blast_Score=89, Evalue=1e-17,
Organism=Homo sapiens, GI301336155, Length=209, Percent_Identity=30.622009569378, Blast_Score=74, Evalue=3e-13,
Organism=Homo sapiens, GI39995082, Length=209, Percent_Identity=30.622009569378, Blast_Score=74, Evalue=4e-13,
Organism=Homo sapiens, GI11545785, Length=174, Percent_Identity=32.7586206896552, Blast_Score=67, Evalue=5e-11,
Organism=Escherichia coli, GI2367212, Length=308, Percent_Identity=33.4415584415584, Blast_Score=145, Evalue=4e-36,
Organism=Escherichia coli, GI87081985, Length=289, Percent_Identity=29.4117647058824, Blast_Score=110, Evalue=2e-25,
Organism=Caenorhabditis elegans, GI17536757, Length=331, Percent_Identity=26.8882175226586, Blast_Score=110, Evalue=2e-24,
Organism=Caenorhabditis elegans, GI71998419, Length=304, Percent_Identity=30.2631578947368, Blast_Score=96, Evalue=3e-20,
Organism=Caenorhabditis elegans, GI115534021, Length=229, Percent_Identity=31.8777292576419, Blast_Score=92, Evalue=7e-19,
Organism=Caenorhabditis elegans, GI25143471, Length=347, Percent_Identity=28.8184438040346, Blast_Score=89, Evalue=3e-18,
Organism=Saccharomyces cerevisiae, GI6324268, Length=282, Percent_Identity=28.0141843971631, Blast_Score=111, Evalue=3e-25,
Organism=Saccharomyces cerevisiae, GI6319447, Length=267, Percent_Identity=28.4644194756554, Blast_Score=81, Evalue=3e-16,
Organism=Drosophila melanogaster, GI22024126, Length=282, Percent_Identity=29.7872340425532, Blast_Score=116, Evalue=3e-26,
Organism=Drosophila melanogaster, GI21355201, Length=280, Percent_Identity=30, Blast_Score=89, Evalue=5e-18,
Organism=Drosophila melanogaster, GI21356579, Length=275, Percent_Identity=25.8181818181818, Blast_Score=83, Evalue=3e-16,
Organism=Drosophila melanogaster, GI24668781, Length=224, Percent_Identity=29.4642857142857, Blast_Score=72, Evalue=9e-13,
Organism=Drosophila melanogaster, GI21356513, Length=212, Percent_Identity=29.7169811320755, Blast_Score=71, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001678
- InterPro:   IPR018314
- InterPro:   IPR006027
- InterPro:   IPR004573 [H]

Pfam domain/function: PF01189 Nol1_Nop2_Fmu; PF01029 NusB [H]

EC number: NA

Molecular weight: Translated: 50649; Mature: 50518

Theoretical pI: Translated: 10.23; Mature: 10.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRNPATSQDNRQRSRPSKGKASPIRKSPNARQQGADGAPRTPGGLQAFHLQHIDRLLGK
CCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCHHHHHHHHHHHHHHH
VLLFARPSDAVVSHYFRENSKLGHRDRGIIAEAIFAVLRRRVEFGQFAESGTGSATRRLG
HHEECCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
LLGLAATLGRDVLSPFLHPDEAVWLDRLTTIERSSLAPRVRANLPEWLYDDLVARHGEAF
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHCCCHHHHHHHHHHHCCCHH
TAALGDAWLRPAPLDLRVNTAKLSREEALAELQTAGIAAELAPMAPAGIRLKGKPALNQL
HHHHHHHHCCCCCCEEEECHHHHHHHHHHHHHHHHCHHHHHCCCCCCCEEECCCCCCCCC
PLFINGGVEVQDEGSQLLCHLLAPRRGEMVVDFCAGAGGKTLALGVAMRSTGRLYAFDVS
CEEEECCEEEECCHHHHHHHHHCCCCCCEEEEEECCCCCCEEEEEEEECCCCCEEEEECC
EKRLANLKPRLARSGLSNVHPVLIDSERDAKVKRLAGKIDRVLVDAPCSGLGTLRRNPDL
HHHHHCCCHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHEEEECCCCCCHHHCCCCCC
KWRQTPESVVELTAKQAAILDAAAKLVKGGGRVVYATCSVLEAENEAIIRDFLASHENFR
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHCCCHHHHHHHHHCCCCEE
LVPVSEVLAEQKIEVPELPAEGGMLALYPHIHQTDGFFAAVLERTR
EEEHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHCC
>Mature Secondary Structure 
SRNPATSQDNRQRSRPSKGKASPIRKSPNARQQGADGAPRTPGGLQAFHLQHIDRLLGK
CCCCCCCCCHHHHCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCHHHHHHHHHHHHHHH
VLLFARPSDAVVSHYFRENSKLGHRDRGIIAEAIFAVLRRRVEFGQFAESGTGSATRRLG
HHEECCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
LLGLAATLGRDVLSPFLHPDEAVWLDRLTTIERSSLAPRVRANLPEWLYDDLVARHGEAF
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHCCCHHHHHHHHHHHCCCHH
TAALGDAWLRPAPLDLRVNTAKLSREEALAELQTAGIAAELAPMAPAGIRLKGKPALNQL
HHHHHHHHCCCCCCEEEECHHHHHHHHHHHHHHHHCHHHHHCCCCCCCEEECCCCCCCCC
PLFINGGVEVQDEGSQLLCHLLAPRRGEMVVDFCAGAGGKTLALGVAMRSTGRLYAFDVS
CEEEECCEEEECCHHHHHHHHHCCCCCCEEEEEECCCCCCEEEEEEEECCCCCEEEEECC
EKRLANLKPRLARSGLSNVHPVLIDSERDAKVKRLAGKIDRVLVDAPCSGLGTLRRNPDL
HHHHHCCCHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHEEEECCCCCCHHHCCCCCC
KWRQTPESVVELTAKQAAILDAAAKLVKGGGRVVYATCSVLEAENEAIIRDFLASHENFR
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHCCCHHHHHHHHHCCCCEE
LVPVSEVLAEQKIEVPELPAEGGMLALYPHIHQTDGFFAAVLERTR
EEEHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]