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The map label for this gene is ybdL [C]

Identifier: 94311628

GI number: 94311628

Start: 2926772

End: 2927953

Strand: Direct

Name: ybdL [C]

Synonym: Rmet_2696

Alternate gene names: 94311628

Gene position: 2926772-2927953 (Clockwise)

Preceding gene: 94311627

Following gene: 94311630

Centisome position: 74.51

GC content: 65.65

Gene sequence:

>1182_bases
ATGGATCTTCAGCGCCTTGCCACCGCTTCCCGCCTCGCCAACATCGACGCCTTCCACGTGATGGAGTTGGCCAAGCAGGC
CGCCGAACTCGAACGCGCCGGGCGCCACATCATCCATATGGGTATCGGCGAGCCCGACTTCACGGCTGCCGCGCCGGTCA
TTCACGCTGCCGAAGCCGCGATGCGCCGCGGTGTCACCCAGTACACGGGCGCGCTTGGCATCCACGCGCTGCGTGAAGCC
ATCGCTGGCTACTACAAGACGTCCTATGGAATCGATGTCCCGGCCCGACGCGTGATTGTCACGGCCGGCGCCTCGGGCGC
GCTGTTGCTGGCCTGCGCCGTACTCGTCGAGATCGGCGCCGAGGTGTTGATGCCGGACCCGAGCTACCCCTGCAACCGGC
ATTTCGTGGCGGCATTCGATGGCCACGCGAAGATGATCCCGAGCGGCCCGGAAGAACGTTTCCAGCTCACGGCGGCCCAG
GTGATCGAGCACTGGGGCGAGAACACGCGGGGCGTGCTGCTGGCATCGCCGTCGAACCCGACCGGCACGTCGATCCTGCC
CGACGAACTCAAGGCCATCCTGGCCGAGGTCCGCAAGCGCCAGGGCTTCGCAATCCTCGACGAGATTTACCAGGGGCTGT
CGTACGACGCACCGCCGGTCTCGGCGCTCTCGCTCGACGACAATGTCGTGACCGTTAACAGCTTCTCGAAGTACTTCAAC
ATGACCGGCTGGCGCCTGGGCTGGCTCGTGGTGCCCGACTCGCTGGTGCCGGCATTCGAAAAGGTCGCGCAGAACCTGTT
CATCTGCGCGTCGGCCGTGGCCCAGCACGCCGCGCTGGCCTGCTTCACGCCCGAGGCACTGGCGATCTATGACGAGCGCA
AGGCGGAATTCCGCCGCCGCCGCGATGCCATCGTTCCCGCCCTCGAAGCACTCGGTCTGCGCGTGCCGGTCAAGCCAGAC
GGCGCGTTCTACGTCTACGCCAACTGCCGCCACGTCAATCATCCCGCCGCCGGCAACGCCGACCGTCTGACACAGGCCAT
CCTGCACGATGCCGGCGTGGTCATGGTGCCTGGCACGGACTTCGGCCCGCATACGGCCAACGACTACATCCGGATTTCAT
ACGCGACGTCCATGCAGAACATCGAGGAGGCGATGCAGCGATTGCATCATTTCCTGCGGTAG

Upstream 100 bases:

>100_bases
GGTGTTTTCGTTTGGTCACCCGATGTTCGGCGGGCGCAACCGATGACGATGCGCCATGCCATCCCTTCTCTGACTCTCTG
ACGGGCCAGTCCCGATTGCC

Downstream 100 bases:

>100_bases
AGGTAGAGGTAGCGCCTGCGCGGATTGCCTGGATTGCTCACCTTTTCACAGGCATCAAACGAAAAAGGCACCCCAAGGGG
TGCCTTTTTCATGAGCGACG

Product: aminotransferase

Products: NA

Alternate protein names: AspAT; Transaminase A [H]

Number of amino acids: Translated: 393; Mature: 393

Protein sequence:

>393_residues
MDLQRLATASRLANIDAFHVMELAKQAAELERAGRHIIHMGIGEPDFTAAAPVIHAAEAAMRRGVTQYTGALGIHALREA
IAGYYKTSYGIDVPARRVIVTAGASGALLLACAVLVEIGAEVLMPDPSYPCNRHFVAAFDGHAKMIPSGPEERFQLTAAQ
VIEHWGENTRGVLLASPSNPTGTSILPDELKAILAEVRKRQGFAILDEIYQGLSYDAPPVSALSLDDNVVTVNSFSKYFN
MTGWRLGWLVVPDSLVPAFEKVAQNLFICASAVAQHAALACFTPEALAIYDERKAEFRRRRDAIVPALEALGLRVPVKPD
GAFYVYANCRHVNHPAAGNADRLTQAILHDAGVVMVPGTDFGPHTANDYIRISYATSMQNIEEAMQRLHHFLR

Sequences:

>Translated_393_residues
MDLQRLATASRLANIDAFHVMELAKQAAELERAGRHIIHMGIGEPDFTAAAPVIHAAEAAMRRGVTQYTGALGIHALREA
IAGYYKTSYGIDVPARRVIVTAGASGALLLACAVLVEIGAEVLMPDPSYPCNRHFVAAFDGHAKMIPSGPEERFQLTAAQ
VIEHWGENTRGVLLASPSNPTGTSILPDELKAILAEVRKRQGFAILDEIYQGLSYDAPPVSALSLDDNVVTVNSFSKYFN
MTGWRLGWLVVPDSLVPAFEKVAQNLFICASAVAQHAALACFTPEALAIYDERKAEFRRRRDAIVPALEALGLRVPVKPD
GAFYVYANCRHVNHPAAGNADRLTQAILHDAGVVMVPGTDFGPHTANDYIRISYATSMQNIEEAMQRLHHFLR
>Mature_393_residues
MDLQRLATASRLANIDAFHVMELAKQAAELERAGRHIIHMGIGEPDFTAAAPVIHAAEAAMRRGVTQYTGALGIHALREA
IAGYYKTSYGIDVPARRVIVTAGASGALLLACAVLVEIGAEVLMPDPSYPCNRHFVAAFDGHAKMIPSGPEERFQLTAAQ
VIEHWGENTRGVLLASPSNPTGTSILPDELKAILAEVRKRQGFAILDEIYQGLSYDAPPVSALSLDDNVVTVNSFSKYFN
MTGWRLGWLVVPDSLVPAFEKVAQNLFICASAVAQHAALACFTPEALAIYDERKAEFRRRRDAIVPALEALGLRVPVKPD
GAFYVYANCRHVNHPAAGNADRLTQAILHDAGVVMVPGTDFGPHTANDYIRISYATSMQNIEEAMQRLHHFLR

Specific function: Unknown

COG id: COG0436

COG function: function code E; Aspartate/tyrosine/aromatic aminotransferase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family [H]

Homologues:

Organism=Homo sapiens, GI95147551, Length=417, Percent_Identity=25.4196642685851, Blast_Score=131, Evalue=9e-31,
Organism=Homo sapiens, GI169881279, Length=417, Percent_Identity=25.4196642685851, Blast_Score=131, Evalue=9e-31,
Organism=Homo sapiens, GI56713256, Length=347, Percent_Identity=25.9365994236311, Blast_Score=120, Evalue=2e-27,
Organism=Homo sapiens, GI56713254, Length=347, Percent_Identity=25.9365994236311, Blast_Score=120, Evalue=2e-27,
Organism=Homo sapiens, GI4507369, Length=376, Percent_Identity=26.5957446808511, Blast_Score=115, Evalue=5e-26,
Organism=Homo sapiens, GI169881281, Length=264, Percent_Identity=23.8636363636364, Blast_Score=87, Evalue=3e-17,
Organism=Escherichia coli, GI1786816, Length=375, Percent_Identity=28, Blast_Score=115, Evalue=4e-27,
Organism=Escherichia coli, GI1788722, Length=395, Percent_Identity=25.3164556962025, Blast_Score=114, Evalue=2e-26,
Organism=Escherichia coli, GI1788627, Length=419, Percent_Identity=24.3436754176611, Blast_Score=100, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI17567663, Length=397, Percent_Identity=26.9521410579345, Blast_Score=119, Evalue=3e-27,
Organism=Caenorhabditis elegans, GI71994476, Length=419, Percent_Identity=25.2983293556086, Blast_Score=102, Evalue=3e-22,
Organism=Caenorhabditis elegans, GI71994472, Length=419, Percent_Identity=25.2983293556086, Blast_Score=102, Evalue=3e-22,
Organism=Caenorhabditis elegans, GI17567369, Length=284, Percent_Identity=23.2394366197183, Blast_Score=77, Evalue=2e-14,
Organism=Saccharomyces cerevisiae, GI6322401, Length=392, Percent_Identity=23.2142857142857, Blast_Score=96, Evalue=1e-20,
Organism=Drosophila melanogaster, GI28573069, Length=393, Percent_Identity=24.4274809160305, Blast_Score=113, Evalue=2e-25,
Organism=Drosophila melanogaster, GI24646114, Length=393, Percent_Identity=24.4274809160305, Blast_Score=113, Evalue=2e-25,
Organism=Drosophila melanogaster, GI28573067, Length=393, Percent_Identity=24.4274809160305, Blast_Score=113, Evalue=2e-25,
Organism=Drosophila melanogaster, GI28573065, Length=393, Percent_Identity=24.4274809160305, Blast_Score=113, Evalue=2e-25,
Organism=Drosophila melanogaster, GI18859735, Length=380, Percent_Identity=23.4210526315789, Blast_Score=95, Evalue=7e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001176
- InterPro:   IPR004839
- InterPro:   IPR004838
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF00155 Aminotran_1_2 [H]

EC number: =2.6.1.1 [H]

Molecular weight: Translated: 42745; Mature: 42745

Theoretical pI: Translated: 6.68; Mature: 6.68

Prosite motif: PS00105 AA_TRANSFER_CLASS_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLQRLATASRLANIDAFHVMELAKQAAELERAGRHIIHMGIGEPDFTAAAPVIHAAEAA
CCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHH
MRRGVTQYTGALGIHALREAIAGYYKTSYGIDVPARRVIVTAGASGALLLACAVLVEIGA
HHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHHHHCCC
EVLMPDPSYPCNRHFVAAFDGHAKMIPSGPEERFQLTAAQVIEHWGENTRGVLLASPSNP
CEECCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCC
TGTSILPDELKAILAEVRKRQGFAILDEIYQGLSYDAPPVSALSLDDNVVTVNSFSKYFN
CCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCEEEECCCCEEEECCHHHHHC
MTGWRLGWLVVPDSLVPAFEKVAQNLFICASAVAQHAALACFTPEALAIYDERKAEFRRR
CCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHHHHHHH
RDAIVPALEALGLRVPVKPDGAFYVYANCRHVNHPAAGNADRLTQAILHDAGVVMVPGTD
HHHHHHHHHHCCCCCCCCCCCCEEEEEECEECCCCCCCCHHHHHHHHHHCCCEEEECCCC
FGPHTANDYIRISYATSMQNIEEAMQRLHHFLR
CCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHC
>Mature Secondary Structure
MDLQRLATASRLANIDAFHVMELAKQAAELERAGRHIIHMGIGEPDFTAAAPVIHAAEAA
CCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHH
MRRGVTQYTGALGIHALREAIAGYYKTSYGIDVPARRVIVTAGASGALLLACAVLVEIGA
HHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHHHHCCC
EVLMPDPSYPCNRHFVAAFDGHAKMIPSGPEERFQLTAAQVIEHWGENTRGVLLASPSNP
CEECCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCC
TGTSILPDELKAILAEVRKRQGFAILDEIYQGLSYDAPPVSALSLDDNVVTVNSFSKYFN
CCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCEEEECCCCEEEECCHHHHHC
MTGWRLGWLVVPDSLVPAFEKVAQNLFICASAVAQHAALACFTPEALAIYDERKAEFRRR
CCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHHHHHHH
RDAIVPALEALGLRVPVKPDGAFYVYANCRHVNHPAAGNADRLTQAILHDAGVVMVPGTD
HHHHHHHHHHCCCCCCCCCCCCEEEEEECEECCCCCCCCHHHHHHHHHHCCCEEEECCCC
FGPHTANDYIRISYATSMQNIEEAMQRLHHFLR
CCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]