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The map label for this gene is nusB

Identifier: 94311627

GI number: 94311627

Start: 2926075

End: 2926590

Strand: Direct

Name: nusB

Synonym: Rmet_2695

Alternate gene names: 94311627

Gene position: 2926075-2926590 (Clockwise)

Preceding gene: 94311626

Following gene: 94311628

Centisome position: 74.49

GC content: 65.89

Gene sequence:

>516_bases
ATGAGTGACGCGCCCGACACCGGCGACAAGGGCGAGGCAGCCGGCAAGCCGGCTGGCGCCAAGCCCCGCACCGAGCCGAA
GGCACCGCCGAAGAGCGCGCGTCGCCGTTCGCGCGAGCTGGCCTTGCAGGGCCTGTACCAGTGGCTGCTGAATCGCAACG
ATATCGGTGCCATCCAGGCTCATCTGCACGATGCCCAAGGCTTTAACAAGGCCGACCGCGAGCACTTCGACGCCCTGCTG
GGTGGCGCCGTGCGCGAGGAAGCACGTCTGACGGCGGCCTTCGAGCCGTTCCTGGACCGCACGGTCGACGAACTGTCGCC
GGTCGAGCGCGCCGCGCTGCTGGTTGGCAGCTACGAACTCGTGCACTGCCTGGACATTCCGTACAAGGTCGTGATCAACG
AAGCTGTCGAACTGACCAAGACCTTCGGCGGCGTGGAAGGCTACAAGTACGTCAACGGCGTGCTCGACAAGCTGGCCGCG
CAGGTGCGGGCGCCAGAAGTATCAGCTCGACGTTAA

Upstream 100 bases:

>100_bases
CGCGATTGCGCCCGCGCCGCAGTGGAAATGGCCAACCTGGTGGTCGCGCTCGATTCGCTGCGCGAGCATGGCGCAGAAGA
CGCAGAAGACGAGGAAGATG

Downstream 100 bases:

>100_bases
TTCGCGCATTTAAAACAGATGTTGCATTTCGGTGCGCGGCATTCGAATATGCTCAGCACCGGCAAAACACCCGCCCCGGC
GGGTGTTTTCGTTTGGTCAC

Product: transcription antitermination protein NusB

Products: NA

Alternate protein names: Protein nusB

Number of amino acids: Translated: 171; Mature: 170

Protein sequence:

>171_residues
MSDAPDTGDKGEAAGKPAGAKPRTEPKAPPKSARRRSRELALQGLYQWLLNRNDIGAIQAHLHDAQGFNKADREHFDALL
GGAVREEARLTAAFEPFLDRTVDELSPVERAALLVGSYELVHCLDIPYKVVINEAVELTKTFGGVEGYKYVNGVLDKLAA
QVRAPEVSARR

Sequences:

>Translated_171_residues
MSDAPDTGDKGEAAGKPAGAKPRTEPKAPPKSARRRSRELALQGLYQWLLNRNDIGAIQAHLHDAQGFNKADREHFDALL
GGAVREEARLTAAFEPFLDRTVDELSPVERAALLVGSYELVHCLDIPYKVVINEAVELTKTFGGVEGYKYVNGVLDKLAA
QVRAPEVSARR
>Mature_170_residues
SDAPDTGDKGEAAGKPAGAKPRTEPKAPPKSARRRSRELALQGLYQWLLNRNDIGAIQAHLHDAQGFNKADREHFDALLG
GAVREEARLTAAFEPFLDRTVDELSPVERAALLVGSYELVHCLDIPYKVVINEAVELTKTFGGVEGYKYVNGVLDKLAAQ
VRAPEVSARR

Specific function: Involved in the transcription termination process

COG id: COG0781

COG function: function code K; Transcription termination factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nusB family

Homologues:

Organism=Escherichia coli, GI1786618, Length=125, Percent_Identity=43.2, Blast_Score=107, Evalue=5e-25,

Paralogues:

None

Copy number: 900 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NUSB_RALME (Q1LJV8)

Other databases:

- EMBL:   CP000352
- RefSeq:   YP_584837.1
- ProteinModelPortal:   Q1LJV8
- SMR:   Q1LJV8
- STRING:   Q1LJV8
- GeneID:   4039520
- GenomeReviews:   CP000352_GR
- KEGG:   rme:Rmet_2695
- eggNOG:   COG0781
- HOGENOM:   HBG734409
- OMA:   IPYKVVI
- PhylomeDB:   Q1LJV8
- ProtClustDB:   PRK00202
- BioCyc:   RMET266264:RMET_2695-MONOMER
- HAMAP:   MF_00073
- InterPro:   IPR011605
- InterPro:   IPR006027
- Gene3D:   G3DSA:1.10.940.10
- TIGRFAMs:   TIGR01951

Pfam domain/function: PF01029 NusB; SSF48013 NusB_RsmB_TIM44

EC number: NA

Molecular weight: Translated: 18675; Mature: 18544

Theoretical pI: Translated: 6.96; Mature: 6.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDAPDTGDKGEAAGKPAGAKPRTEPKAPPKSARRRSRELALQGLYQWLLNRNDIGAIQA
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
HLHDAQGFNKADREHFDALLGGAVREEARLTAAFEPFLDRTVDELSPVERAALLVGSYEL
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
VHCLDIPYKVVINEAVELTKTFGGVEGYKYVNGVLDKLAAQVRAPEVSARR
HHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
SDAPDTGDKGEAAGKPAGAKPRTEPKAPPKSARRRSRELALQGLYQWLLNRNDIGAIQA
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
HLHDAQGFNKADREHFDALLGGAVREEARLTAAFEPFLDRTVDELSPVERAALLVGSYEL
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
VHCLDIPYKVVINEAVELTKTFGGVEGYKYVNGVLDKLAAQVRAPEVSARR
HHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA