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The map label for this gene is ubiD [H]

Identifier: 94311630

GI number: 94311630

Start: 2929742

End: 2931304

Strand: Direct

Name: ubiD [H]

Synonym: Rmet_2698

Alternate gene names: 94311630

Gene position: 2929742-2931304 (Clockwise)

Preceding gene: 94311628

Following gene: 94311631

Centisome position: 74.58

GC content: 64.24

Gene sequence:

>1563_bases
ATGACCCCTCGCGACACCGCACCCCAAATCGATTTCACTATGCAATACAAAGACTTGCGCGATTTTATGAGCCAGCTCGA
GCAGCGTGGCGAGCTGAAACGCGTGGCAGCACCGGTGTCTCCGAACCTCGAAATGACCGAGATCTGCGACCGCCTGCTGC
GCGCGAACGGCCCGGCCGTCCTGTTCGAGCAACCCCGCCGTGACAATGGCGATATCTATAAGGTGCCTGTCCTGGCAAAT
CTGTTCGGCACGACACAGAGGGTGGCGCAGGGCATGGGCGCATCGTCGCTTGAGGATCTTCGCGACATCGGCCGCGTGCT
CTCGGTCCTCAAGGAACCGGAGCCGCCGCGCGGCCTGCGTGAAGCCGGCAAACTGTTTACGCTGGCCAAATCCGTATGGG
ACATGGCGCCCAAGCGCGTGAGCAGCCCCGCGTGTCAGGAGATCGTCTGGGAAGGCAACGACGTCGATCTCGCGCGCCTG
CCAATCCAGACTTGCTGGCCCGGCGATGCAGCACCACTCATTACATGGGGCCTGGTCGTGACGAAGGGCCCGCACAAGAA
GCGCCAGAACCTGGGCATCTATCGCCAGCAGGTCATCAGCCGTAACCAGGTCATCATGCGCTGGCTCGCCCACCGTGGCG
GTGCGCTCGATTTCCGCGAGCACGCGCTGGCCAACCCGGGCAAGCCGTTCCCGATCGCCGTGGCGCTGGGCGCCGATCCG
GCCACGATCCTCGGGGCCGTCACGCCCGTGCCCGACACACTCTCCGAGTACCAATTCGCCGGCCTGCTGCGCGGCAGCCG
CACCGCGCTGGCCAGCTGTATCACGCCTACGCTGTCCGAACTGTCGGTGCCCGCATCGGCGGAGATCATCCTCGAGGGCC
ACATCCAGCCCGATCCGAACCACCCGTCCGGCTACCAGCACGCGCTGGAAGGCCCGTATGGCGATCACACCGGCTATTAC
AACGAGCAGGACTGGTTCCCGGTCTTCACGATCGATCGCATCACGATGCGGCGCGACCCGATCTACCACTCCACCTATAC
GGGCAAGCCGCCCGACGAGCCGGCCGTGCTCGGCGTGGCGCTGAATGAGGTGTTCGTGCCGCTGCTGCAGAAGCAGTTTC
CCGAGATCACCGACTTCTACCTGCCGCCGGAGGGCTGCAGCTACCGCATGGCACTGGTCCGCATGAAGAAGCAGTACGCC
GGCCACGCCAAGCGCGTGATGTTCGGCGTGTGGAGCTTCCTGCGCCAGTTCATGTATACGAAGTTCATCGTCGTGGTGGA
TGACGACATCGACGTTCGTGACTGGAAGGAAGTGATCTGGGCGATCACCACGCGAGTGGACCCGACCCGCGACACGGTGA
TGGTCGACAACACGCCGATCGACTACCTCGACTTTGCCTCGCCGGTCTCGGGCCTGGGATCGAAGATGGGTATCGACGCC
ACCGACAAGTGGCCCGGCGAAACCACGCGCGAATGGGGCACCCCGATCACCATGGCCCCGGAGATCAAGGCCCGCGTGGA
TCAGATGTGGGGCTCGCTGTTCGAGGAAGGCCCCGGCAAGTAG

Upstream 100 bases:

>100_bases
CCTCGCAGTTTATTTACAATTTCAACTCGCGCGCCGGCACGATTTTTTTGCGCCTTTGCGATGGCGTGTGTATCGTCACA
CACATTGGAAACGTCGCGCC

Downstream 100 bases:

>100_bases
CGCGATTGCTCGCTATCATCGCTTTTTGACCGGCAATCCAAGACAACACTCTCATGGCCCGCGCAGACGGGCTCCGGAGG
AGACAAATGACGCTTGCAAC

Product: 3-octaprenyl-4-hydroxybenzoate decarboxylase

Products: NA

Alternate protein names: Polyprenyl p-hydroxybenzoate decarboxylase [H]

Number of amino acids: Translated: 520; Mature: 519

Protein sequence:

>520_residues
MTPRDTAPQIDFTMQYKDLRDFMSQLEQRGELKRVAAPVSPNLEMTEICDRLLRANGPAVLFEQPRRDNGDIYKVPVLAN
LFGTTQRVAQGMGASSLEDLRDIGRVLSVLKEPEPPRGLREAGKLFTLAKSVWDMAPKRVSSPACQEIVWEGNDVDLARL
PIQTCWPGDAAPLITWGLVVTKGPHKKRQNLGIYRQQVISRNQVIMRWLAHRGGALDFREHALANPGKPFPIAVALGADP
ATILGAVTPVPDTLSEYQFAGLLRGSRTALASCITPTLSELSVPASAEIILEGHIQPDPNHPSGYQHALEGPYGDHTGYY
NEQDWFPVFTIDRITMRRDPIYHSTYTGKPPDEPAVLGVALNEVFVPLLQKQFPEITDFYLPPEGCSYRMALVRMKKQYA
GHAKRVMFGVWSFLRQFMYTKFIVVVDDDIDVRDWKEVIWAITTRVDPTRDTVMVDNTPIDYLDFASPVSGLGSKMGIDA
TDKWPGETTREWGTPITMAPEIKARVDQMWGSLFEEGPGK

Sequences:

>Translated_520_residues
MTPRDTAPQIDFTMQYKDLRDFMSQLEQRGELKRVAAPVSPNLEMTEICDRLLRANGPAVLFEQPRRDNGDIYKVPVLAN
LFGTTQRVAQGMGASSLEDLRDIGRVLSVLKEPEPPRGLREAGKLFTLAKSVWDMAPKRVSSPACQEIVWEGNDVDLARL
PIQTCWPGDAAPLITWGLVVTKGPHKKRQNLGIYRQQVISRNQVIMRWLAHRGGALDFREHALANPGKPFPIAVALGADP
ATILGAVTPVPDTLSEYQFAGLLRGSRTALASCITPTLSELSVPASAEIILEGHIQPDPNHPSGYQHALEGPYGDHTGYY
NEQDWFPVFTIDRITMRRDPIYHSTYTGKPPDEPAVLGVALNEVFVPLLQKQFPEITDFYLPPEGCSYRMALVRMKKQYA
GHAKRVMFGVWSFLRQFMYTKFIVVVDDDIDVRDWKEVIWAITTRVDPTRDTVMVDNTPIDYLDFASPVSGLGSKMGIDA
TDKWPGETTREWGTPITMAPEIKARVDQMWGSLFEEGPGK
>Mature_519_residues
TPRDTAPQIDFTMQYKDLRDFMSQLEQRGELKRVAAPVSPNLEMTEICDRLLRANGPAVLFEQPRRDNGDIYKVPVLANL
FGTTQRVAQGMGASSLEDLRDIGRVLSVLKEPEPPRGLREAGKLFTLAKSVWDMAPKRVSSPACQEIVWEGNDVDLARLP
IQTCWPGDAAPLITWGLVVTKGPHKKRQNLGIYRQQVISRNQVIMRWLAHRGGALDFREHALANPGKPFPIAVALGADPA
TILGAVTPVPDTLSEYQFAGLLRGSRTALASCITPTLSELSVPASAEIILEGHIQPDPNHPSGYQHALEGPYGDHTGYYN
EQDWFPVFTIDRITMRRDPIYHSTYTGKPPDEPAVLGVALNEVFVPLLQKQFPEITDFYLPPEGCSYRMALVRMKKQYAG
HAKRVMFGVWSFLRQFMYTKFIVVVDDDIDVRDWKEVIWAITTRVDPTRDTVMVDNTPIDYLDFASPVSGLGSKMGIDAT
DKWPGETTREWGTPITMAPEIKARVDQMWGSLFEEGPGK

Specific function: Catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol [H]

COG id: COG0043

COG function: function code H; 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ubiD family [H]

Homologues:

Organism=Escherichia coli, GI1790277, Length=507, Percent_Identity=66.4694280078895, Blast_Score=706, Evalue=0.0,
Organism=Saccharomyces cerevisiae, GI6320748, Length=467, Percent_Identity=24.1970021413276, Blast_Score=114, Evalue=4e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002830
- InterPro:   IPR009002 [H]

Pfam domain/function: PF01977 UbiD [H]

EC number: 4.1.1.-

Molecular weight: Translated: 58174; Mature: 58043

Theoretical pI: Translated: 6.08; Mature: 6.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPRDTAPQIDFTMQYKDLRDFMSQLEQRGELKRVAAPVSPNLEMTEICDRLLRANGPAV
CCCCCCCCCCEEEECHHHHHHHHHHHHHCCCHHHHHCCCCCCCCHHHHHHHHHHCCCCEE
LFEQPRRDNGDIYKVPVLANLFGTTQRVAQGMGASSLEDLRDIGRVLSVLKEPEPPRGLR
EEECCCCCCCCEEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCHHHH
EAGKLFTLAKSVWDMAPKRVSSPACQEIVWEGNDVDLARLPIQTCWPGDAAPLITWGLVV
HHHHHHHHHHHHHHHCHHHCCCHHHHHHHCCCCCCCEEECCHHHCCCCCCCHHHHHHEEE
TKGPHKKRQNLGIYRQQVISRNQVIMRWLAHRGGALDFREHALANPGKPFPIAVALGADP
ECCCCHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCEEEEEECCCC
ATILGAVTPVPDTLSEYQFAGLLRGSRTALASCITPTLSELSVPASAEIILEGHIQPDPN
HHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCC
HPSGYQHALEGPYGDHTGYYNEQDWFPVFTIDRITMRRDPIYHSTYTGKPPDEPAVLGVA
CCCCHHHHHCCCCCCCCCCCCCCCCEEEEEEEHHHHCCCCCEECCCCCCCCCCCCEEHHH
LNEVFVPLLQKQFPEITDFYLPPEGCSYRMALVRMKKQYAGHAKRVMFGVWSFLRQFMYT
HHHHHHHHHHHHCCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KFIVVVDDDIDVRDWKEVIWAITTRVDPTRDTVMVDNTPIDYLDFASPVSGLGSKMGIDA
EEEEEECCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHCHHHHCCCCCCCCC
TDKWPGETTREWGTPITMAPEIKARVDQMWGSLFEEGPGK
CCCCCCCCCHHCCCCCEECCHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
TPRDTAPQIDFTMQYKDLRDFMSQLEQRGELKRVAAPVSPNLEMTEICDRLLRANGPAV
CCCCCCCCCEEEECHHHHHHHHHHHHHCCCHHHHHCCCCCCCCHHHHHHHHHHCCCCEE
LFEQPRRDNGDIYKVPVLANLFGTTQRVAQGMGASSLEDLRDIGRVLSVLKEPEPPRGLR
EEECCCCCCCCEEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCHHHH
EAGKLFTLAKSVWDMAPKRVSSPACQEIVWEGNDVDLARLPIQTCWPGDAAPLITWGLVV
HHHHHHHHHHHHHHHCHHHCCCHHHHHHHCCCCCCCEEECCHHHCCCCCCCHHHHHHEEE
TKGPHKKRQNLGIYRQQVISRNQVIMRWLAHRGGALDFREHALANPGKPFPIAVALGADP
ECCCCHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCEEEEEECCCC
ATILGAVTPVPDTLSEYQFAGLLRGSRTALASCITPTLSELSVPASAEIILEGHIQPDPN
HHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCC
HPSGYQHALEGPYGDHTGYYNEQDWFPVFTIDRITMRRDPIYHSTYTGKPPDEPAVLGVA
CCCCHHHHHCCCCCCCCCCCCCCCCEEEEEEEHHHHCCCCCEECCCCCCCCCCCCEEHHH
LNEVFVPLLQKQFPEITDFYLPPEGCSYRMALVRMKKQYAGHAKRVMFGVWSFLRQFMYT
HHHHHHHHHHHHCCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KFIVVVDDDIDVRDWKEVIWAITTRVDPTRDTVMVDNTPIDYLDFASPVSGLGSKMGIDA
EEEEEECCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHCHHHHCCCCCCCCC
TDKWPGETTREWGTPITMAPEIKARVDQMWGSLFEEGPGK
CCCCCCCCCHHCCCCCEECCHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA