Click here to switch to the map view.

The map label for this gene is trbD

Identifier: 94310494

GI number: 94310494

Start: 1674036

End: 1674308

Strand: Direct

Name: trbD

Synonym: Rmet_1552

Alternate gene names: NA

Gene position: 1674036-1674308 (Clockwise)

Preceding gene: 94310493

Following gene: 94310495

Centisome position: 42.62

GC content: 68.86

Gene sequence:

>273_bases
ATGAGTGCCCCGGACACCTTCGCGGACGGTTTCGAGGTGCCGCTGCATCGCTCGCTGACCGAGCCGATTCTGCTGGGCGG
TGCGCCGCGCACCGTGGCGATCGCCAACGGCACGCTGACCGCCGCTGTCGGCCTGGGCCTGCAACTGTGGATTCCCGGCG
TGGTGCTCTGGATCGTCGGCCATTCGCTGGCGGTGTGGGGTGCGCGCGTCGATCCGCAGTTCATGCAGGTCTTCGCCCGG
CACATCAAGCACCGCCCGCTGCTGGACGTGTGA

Upstream 100 bases:

>100_bases
GCTTTCGCAAGCTGATCCAGATCGTGTTCGGCCTGTCCATCGCGTTCGCGGCTTCGAGCTTCTTCCTGTCGTTCTTCAGC
TTCTCCGGCGGGGCGGTCGT

Downstream 100 bases:

>100_bases
GGGGAGGACGCCGCGATGCTGAACCTCGCCGAATACCGCCAGCGCCCGGCCTTGCTTGCCGACTGGCTGCCCTGGGCCGG
ACTGGTCGCGCCGGGCATCG

Product: putative conjugal transfer transmembrane protein

Products: NA

Alternate protein names: Conjugal Transfer Protein TrbB; Conjugal Transfer Protein; Conjugal Transfer TrbD Transmembrane Protein; Type IV Secretory Pathway VirB3 Family Protein; Conjugal Transfer Trbd Transmembrane Protein; Type IV Secretory Pathway TrbD Component; Type Iv Secretory Pathway Virb3 Family Protein; Conjugal Transfer Protein Trbd; Type IV Secretory Pathway TrbD Component-Like Protein; Conjugative Transfer Protein TrbD; P-Type Conjugative Transfer Protein TrbD

Number of amino acids: Translated: 90; Mature: 89

Protein sequence:

>90_residues
MSAPDTFADGFEVPLHRSLTEPILLGGAPRTVAIANGTLTAAVGLGLQLWIPGVVLWIVGHSLAVWGARVDPQFMQVFAR
HIKHRPLLDV

Sequences:

>Translated_90_residues
MSAPDTFADGFEVPLHRSLTEPILLGGAPRTVAIANGTLTAAVGLGLQLWIPGVVLWIVGHSLAVWGARVDPQFMQVFAR
HIKHRPLLDV
>Mature_89_residues
SAPDTFADGFEVPLHRSLTEPILLGGAPRTVAIANGTLTAAVGLGLQLWIPGVVLWIVGHSLAVWGARVDPQFMQVFARH
IKHRPLLDV

Specific function: Unknown

COG id: COG5268

COG function: function code NU; Type IV secretory pathway, TrbD component

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 9689; Mature: 9557

Theoretical pI: Translated: 7.88; Mature: 7.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAPDTFADGFEVPLHRSLTEPILLGGAPRTVAIANGTLTAAVGLGLQLWIPGVVLWIVG
CCCCCCCCCCCCCCCCCCCCCCEEECCCCCEEEEECCCEEHHHHCCHHHHHHHHHHHHHH
HSLAVWGARVDPQFMQVFARHIKHRPLLDV
HHHHCCCCCCCHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
SAPDTFADGFEVPLHRSLTEPILLGGAPRTVAIANGTLTAAVGLGLQLWIPGVVLWIVG
CCCCCCCCCCCCCCCCCCCCCEEECCCCCEEEEECCCEEHHHHCCHHHHHHHHHHHHHH
HSLAVWGARVDPQFMQVFARHIKHRPLLDV
HHHHCCCCCCCHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA