| Definition | Cupriavidus metallidurans CH34 chromosome, complete genome. |
|---|---|
| Accession | NC_007973 |
| Length | 3,928,089 |
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The map label for this gene is trbE [H]
Identifier: 94310495
GI number: 94310495
Start: 1674324
End: 1676753
Strand: Direct
Name: trbE [H]
Synonym: Rmet_1553
Alternate gene names: 94310495
Gene position: 1674324-1676753 (Clockwise)
Preceding gene: 94310494
Following gene: 94310496
Centisome position: 42.62
GC content: 66.75
Gene sequence:
>2430_bases ATGCTGAACCTCGCCGAATACCGCCAGCGCCCGGCCTTGCTTGCCGACTGGCTGCCCTGGGCCGGACTGGTCGCGCCGGG CATCGTCTTGAACAAGGACGGCAGTTTCCAGCGCACGGCCCGGTTTCGCGGGCCTGACCTCGACAGCGCGACGCAAGGCG AGCTGATTGCCACGTCGGCACGGCTGAACAACGCATTGCGCCGGCTGGGTTCTGGCTGGGCCTTGTTCATCGAGGCCGAG CGCCGCGCCGCTGCCGACTATCCGCGCTCGGAGTTTCCCGAGCCGCTTTCGTGGGTGGTGGAGGAAGAACGCCGGGCCGC CTTCGAGGACTCGGGCAATCACTTCGAGAGCGGCTACCACCTGACGCTGCTTTACCTGCCGCCGGAAGAATCCCGCGCCC GTGCAGCCAAGATGCTCTACGAGAACACGCCGACGAATGGCGTGGACTGGCGCGAGCGGCTGCAAGCCTTCGTCGCGGAA ACGGATCGCGTCTTTGACCTGCTCGACGGCGTGATGCCGGAAGTTGACTGGCTCGATGACGCGCAGACGCTGACCTACCT GCACGCGACCATCTCGACGCGGCGCTATTCGCTGGCGGTGCCCGAAGTGCCGTTCCACATCGACGCGCTGCTGACCGACT CGCCGCTGGTCGGTGGCCTGGCGCCCATGCTGGGCGACCAGCACCTGCGCGTGGTGTCAGTGCGGGGCTTCCCAACCTCG ACCTGGCCGGGGATTCTGGACGACCTCAACCGCCTCGGTTTTGCGTACCGCTGGAGCACGCGCTTTCTCTGCCTCGACAA AGCCGAGGCGGAGAAAGAGCTTTCCCGCCTGCGCCGCCAGTGGTTCGCCAAGCGCAAGAACGTCATCGCGCTGCTGCGCG AAACGATCTTCCAGCAGGAAAGCCCGCTGGTCGATACCGACGCCAACAACAAGGCCGCCGATGCCGACGCCGCCTTGCAG GAGCTGGGCAGCGATCAAGTCGCCTTCGGCTACCTGACGGCGACCGTGACCGTCATGGACACGGACGCCGCCGTGGCGGA CGAGAAGCTGCGCATGGTGGAGCGTGTCATCCAGGGTCGGGGTTTCGTCACCATCCCCGAAACGCTCAACGCCGTGGATG CCTGGTTGTCCTCGATCCCCGGCAATGCCTACGCCAACGTGCGCCAGCCCATCGTCTCGACGTTGAACCTGGCGCACCTG ATGCCGGTGTCGGCGGTATGGGCTGGCCCCGAGCGCAATGACCACCTCGACGGCCCGCCGCTGATCGTCACGCGCACCGA TGGCGCCACGCCGTTCCGGCTGGTGACGCACATCGGCGACGTGGGCCACACGCTGGTGGCCGGGCCGACCGGCATGGGCA AATCGGTGCTGCTCGCCACCTTGGCAATGCAGTTCCGGCGCTACCCCGGCTCGCGCATCTTCGCCTTCGACATGGGGCGC TCGATGCGGGCCACCATCCTGGGCCTCGGTGGCGAGCACTACGACCTGGGCACGGATGGCGAAATCGCCTTCCAGCCGCT CGCGCGCATCGACCGCGAGGGCTACCGCACCTGGGCGGCCGAATGGATCGAGGGCCGCTTGCTGCACGAAGGCGTGGCTG TCGGCCCAGAGGAGAAGGCGGCCATCTGGTCGGCGCTGGGAAGTCTCGCCGGTGCGCCGGTGGAGCAGCGCACGATGACG GGCCTGTCGGTGCTGTTGCAATCGAATGCGCTGCGCCAGGCGCTGTCGCCCTATGTGCTCGGTGGCGCCCACGGCAAGCT GCTGGACGCCGACCACGACCGGCTCGGTATGGCCGACGTGCAGTGCTTCGAGATGGAGGAGCTGATGCACAGCAAGGCCG CCGTCATGGCCGTGCTGCATTACCTCTTTGCACGCTTCGATGAACGCTTCGACGGGGCGCCCACGCTGCTGATCCTCGAT GAAGCGTGGTTGTTTCTCGATGACCCGGTGTTTGCCGCGCGTATCCGGCAATGGCTCAAGACGCTGCGCAAGAAGAACGT GAGCGTCATCTTCGCCACGCAGAGCTTGGCCGACATCAAGGATTCGAGCATCGCCCCGGCCATCATCGAGAGCTGCGCGA GCCGCATCTTCCTGCCGAACCCGCAGGCGACCGAACCGCAGATTCACACGATCTACGAGGGCTTCGGGCTCAACAGGCGG CAGATCGAAATCGTCGCCACTGCGCAGCCCAAACGCGACTACTACTACCAATCACGCCTCGGCAACCGCCTATTCGACCT CGACCTGGGGCCGGCGGCGCTGGCCTTCGCGGGCGCGTCCACGCCGCAAGACCAGCGCGACATGGATCGCGTGCTGCTGG ACGCCGGCGTGCCCGGCTTCGCGGACGCCTGGCTGCGCCATCGCGGCCTCGATTGGGCGGCTGACCTGCTGCCTTCGTTC ACCGACCACCCACAGGAGAACCTGCCATGA
Upstream 100 bases:
>100_bases GGCGGTGTGGGGTGCGCGCGTCGATCCGCAGTTCATGCAGGTCTTCGCCCGGCACATCAAGCACCGCCCGCTGCTGGACG TGTGAGGGGAGGACGCCGCG
Downstream 100 bases:
>100_bases AGAAGCGCCTTATCGCCGCCGCCATCGCGGCCATGCTTTGCACCGCCACCGCCCATGCGCAATGGGTCGTGATCGACCCC ACGAACCTCGTGCAGAACAC
Product: conjugal transfer ATPase TrbE
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 809; Mature: 809
Protein sequence:
>809_residues MLNLAEYRQRPALLADWLPWAGLVAPGIVLNKDGSFQRTARFRGPDLDSATQGELIATSARLNNALRRLGSGWALFIEAE RRAAADYPRSEFPEPLSWVVEEERRAAFEDSGNHFESGYHLTLLYLPPEESRARAAKMLYENTPTNGVDWRERLQAFVAE TDRVFDLLDGVMPEVDWLDDAQTLTYLHATISTRRYSLAVPEVPFHIDALLTDSPLVGGLAPMLGDQHLRVVSVRGFPTS TWPGILDDLNRLGFAYRWSTRFLCLDKAEAEKELSRLRRQWFAKRKNVIALLRETIFQQESPLVDTDANNKAADADAALQ ELGSDQVAFGYLTATVTVMDTDAAVADEKLRMVERVIQGRGFVTIPETLNAVDAWLSSIPGNAYANVRQPIVSTLNLAHL MPVSAVWAGPERNDHLDGPPLIVTRTDGATPFRLVTHIGDVGHTLVAGPTGMGKSVLLATLAMQFRRYPGSRIFAFDMGR SMRATILGLGGEHYDLGTDGEIAFQPLARIDREGYRTWAAEWIEGRLLHEGVAVGPEEKAAIWSALGSLAGAPVEQRTMT GLSVLLQSNALRQALSPYVLGGAHGKLLDADHDRLGMADVQCFEMEELMHSKAAVMAVLHYLFARFDERFDGAPTLLILD EAWLFLDDPVFAARIRQWLKTLRKKNVSVIFATQSLADIKDSSIAPAIIESCASRIFLPNPQATEPQIHTIYEGFGLNRR QIEIVATAQPKRDYYYQSRLGNRLFDLDLGPAALAFAGASTPQDQRDMDRVLLDAGVPGFADAWLRHRGLDWAADLLPSF TDHPQENLP
Sequences:
>Translated_809_residues MLNLAEYRQRPALLADWLPWAGLVAPGIVLNKDGSFQRTARFRGPDLDSATQGELIATSARLNNALRRLGSGWALFIEAE RRAAADYPRSEFPEPLSWVVEEERRAAFEDSGNHFESGYHLTLLYLPPEESRARAAKMLYENTPTNGVDWRERLQAFVAE TDRVFDLLDGVMPEVDWLDDAQTLTYLHATISTRRYSLAVPEVPFHIDALLTDSPLVGGLAPMLGDQHLRVVSVRGFPTS TWPGILDDLNRLGFAYRWSTRFLCLDKAEAEKELSRLRRQWFAKRKNVIALLRETIFQQESPLVDTDANNKAADADAALQ ELGSDQVAFGYLTATVTVMDTDAAVADEKLRMVERVIQGRGFVTIPETLNAVDAWLSSIPGNAYANVRQPIVSTLNLAHL MPVSAVWAGPERNDHLDGPPLIVTRTDGATPFRLVTHIGDVGHTLVAGPTGMGKSVLLATLAMQFRRYPGSRIFAFDMGR SMRATILGLGGEHYDLGTDGEIAFQPLARIDREGYRTWAAEWIEGRLLHEGVAVGPEEKAAIWSALGSLAGAPVEQRTMT GLSVLLQSNALRQALSPYVLGGAHGKLLDADHDRLGMADVQCFEMEELMHSKAAVMAVLHYLFARFDERFDGAPTLLILD EAWLFLDDPVFAARIRQWLKTLRKKNVSVIFATQSLADIKDSSIAPAIIESCASRIFLPNPQATEPQIHTIYEGFGLNRR QIEIVATAQPKRDYYYQSRLGNRLFDLDLGPAALAFAGASTPQDQRDMDRVLLDAGVPGFADAWLRHRGLDWAADLLPSF TDHPQENLP >Mature_809_residues MLNLAEYRQRPALLADWLPWAGLVAPGIVLNKDGSFQRTARFRGPDLDSATQGELIATSARLNNALRRLGSGWALFIEAE RRAAADYPRSEFPEPLSWVVEEERRAAFEDSGNHFESGYHLTLLYLPPEESRARAAKMLYENTPTNGVDWRERLQAFVAE TDRVFDLLDGVMPEVDWLDDAQTLTYLHATISTRRYSLAVPEVPFHIDALLTDSPLVGGLAPMLGDQHLRVVSVRGFPTS TWPGILDDLNRLGFAYRWSTRFLCLDKAEAEKELSRLRRQWFAKRKNVIALLRETIFQQESPLVDTDANNKAADADAALQ ELGSDQVAFGYLTATVTVMDTDAAVADEKLRMVERVIQGRGFVTIPETLNAVDAWLSSIPGNAYANVRQPIVSTLNLAHL MPVSAVWAGPERNDHLDGPPLIVTRTDGATPFRLVTHIGDVGHTLVAGPTGMGKSVLLATLAMQFRRYPGSRIFAFDMGR SMRATILGLGGEHYDLGTDGEIAFQPLARIDREGYRTWAAEWIEGRLLHEGVAVGPEEKAAIWSALGSLAGAPVEQRTMT GLSVLLQSNALRQALSPYVLGGAHGKLLDADHDRLGMADVQCFEMEELMHSKAAVMAVLHYLFARFDERFDGAPTLLILD EAWLFLDDPVFAARIRQWLKTLRKKNVSVIFATQSLADIKDSSIAPAIIESCASRIFLPNPQATEPQIHTIYEGFGLNRR QIEIVATAQPKRDYYYQSRLGNRLFDLDLGPAALAFAGASTPQDQRDMDRVLLDAGVPGFADAWLRHRGLDWAADLLPSF TDHPQENLP
Specific function: Unknown
COG id: COG3451
COG function: function code U; Type IV secretory pathway, VirB4 components
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the trbE/virB4 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003593 - InterPro: IPR004346 - InterPro: IPR018145 [H]
Pfam domain/function: PF03135 CagE_TrbE_VirB [H]
EC number: NA
Molecular weight: Translated: 89772; Mature: 89772
Theoretical pI: Translated: 5.16; Mature: 5.16
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLNLAEYRQRPALLADWLPWAGLVAPGIVLNKDGSFQRTARFRGPDLDSATQGELIATSA CCCHHHHHCCCCHHHHHCCHHHHHCCCEEEECCCCCHHHHHCCCCCCCCCCCCCEEEHHH RLNNALRRLGSGWALFIEAERRAAADYPRSEFPEPLSWVVEEERRAAFEDSGNHFESGYH HHHHHHHHHCCCEEEEEEECHHHCCCCCHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCEE LTLLYLPPEESRARAAKMLYENTPTNGVDWRERLQAFVAETDRVFDLLDGVMPEVDWLDD EEEEEECCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC AQTLTYLHATISTRRYSLAVPEVPFHIDALLTDSPLVGGLAPMLGDQHLRVVSVRGFPTS HHHHHHHHHHHHCCEEEEECCCCCCEEEEEECCCCCHHHHHHHCCCCCEEEEEECCCCCC TWPGILDDLNRLGFAYRWSTRFLCLDKAEAEKELSRLRRQWFAKRKNVIALLRETIFQQE CCCHHHHHHHHCCEEEEECCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC SPLVDTDANNKAADADAALQELGSDQVAFGYLTATVTVMDTDAAVADEKLRMVERVIQGR CCCCCCCCCCCCCHHHHHHHHCCCCCEEEEEEEEEEEEEECCHHHHHHHHHHHHHHHHCC GFVTIPETLNAVDAWLSSIPGNAYANVRQPIVSTLNLAHLMPVSAVWAGPERNDHLDGPP CCEECCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCC LIVTRTDGATPFRLVTHIGDVGHTLVAGPTGMGKSVLLATLAMQFRRYPGSRIFAFDMGR EEEEECCCCCHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCC SMRATILGLGGEHYDLGTDGEIAFQPLARIDREGYRTWAAEWIEGRLLHEGVAVGPEEKA CCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCCCCCCHHH AIWSALGSLAGAPVEQRTMTGLSVLLQSNALRQALSPYVLGGAHGKLLDADHDRLGMADV HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCHH QCFEMEELMHSKAAVMAVLHYLFARFDERFDGAPTLLILDEAWLFLDDPVFAARIRQWLK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCEEEECCCHHHHHHHHHHH TLRKKNVSVIFATQSLADIKDSSIAPAIIESCASRIFLPNPQATEPQIHTIYEGFGLNRR HHHHCCCEEEEEECHHHHCCCCCCCHHHHHHHHHCEECCCCCCCCCHHHHHHHCCCCCCE QIEIVATAQPKRDYYYQSRLGNRLFDLDLGPAALAFAGASTPQDQRDMDRVLLDAGVPGF EEEEEEECCCCHHHHHHHHHCCEEEECCCCHHHHHCCCCCCCCHHHHHHHHHHHCCCCCH ADAWLRHRGLDWAADLLPSFTDHPQENLP HHHHHHHCCCCHHHHHCCCCCCCCCCCCC >Mature Secondary Structure MLNLAEYRQRPALLADWLPWAGLVAPGIVLNKDGSFQRTARFRGPDLDSATQGELIATSA CCCHHHHHCCCCHHHHHCCHHHHHCCCEEEECCCCCHHHHHCCCCCCCCCCCCCEEEHHH RLNNALRRLGSGWALFIEAERRAAADYPRSEFPEPLSWVVEEERRAAFEDSGNHFESGYH HHHHHHHHHCCCEEEEEEECHHHCCCCCHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCEE LTLLYLPPEESRARAAKMLYENTPTNGVDWRERLQAFVAETDRVFDLLDGVMPEVDWLDD EEEEEECCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC AQTLTYLHATISTRRYSLAVPEVPFHIDALLTDSPLVGGLAPMLGDQHLRVVSVRGFPTS HHHHHHHHHHHHCCEEEEECCCCCCEEEEEECCCCCHHHHHHHCCCCCEEEEEECCCCCC TWPGILDDLNRLGFAYRWSTRFLCLDKAEAEKELSRLRRQWFAKRKNVIALLRETIFQQE CCCHHHHHHHHCCEEEEECCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC SPLVDTDANNKAADADAALQELGSDQVAFGYLTATVTVMDTDAAVADEKLRMVERVIQGR CCCCCCCCCCCCCHHHHHHHHCCCCCEEEEEEEEEEEEEECCHHHHHHHHHHHHHHHHCC GFVTIPETLNAVDAWLSSIPGNAYANVRQPIVSTLNLAHLMPVSAVWAGPERNDHLDGPP CCEECCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCC LIVTRTDGATPFRLVTHIGDVGHTLVAGPTGMGKSVLLATLAMQFRRYPGSRIFAFDMGR EEEEECCCCCHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCC SMRATILGLGGEHYDLGTDGEIAFQPLARIDREGYRTWAAEWIEGRLLHEGVAVGPEEKA CCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCCCCCCHHH AIWSALGSLAGAPVEQRTMTGLSVLLQSNALRQALSPYVLGGAHGKLLDADHDRLGMADV HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCHH QCFEMEELMHSKAAVMAVLHYLFARFDERFDGAPTLLILDEAWLFLDDPVFAARIRQWLK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCEEEECCCHHHHHHHHHHH TLRKKNVSVIFATQSLADIKDSSIAPAIIESCASRIFLPNPQATEPQIHTIYEGFGLNRR HHHHCCCEEEEEECHHHHCCCCCCCHHHHHHHHHCEECCCCCCCCCHHHHHHHCCCCCCE QIEIVATAQPKRDYYYQSRLGNRLFDLDLGPAALAFAGASTPQDQRDMDRVLLDAGVPGF EEEEEEECCCCHHHHHHHHHCCEEEECCCCHHHHHCCCCCCCCHHHHHHHHHHHCCCCCH ADAWLRHRGLDWAADLLPSFTDHPQENLP HHHHHHHCCCCHHHHHCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8763954 [H]