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The map label for this gene is hoxY [H]

Identifier: 94310466

GI number: 94310466

Start: 1646529

End: 1647158

Strand: Direct

Name: hoxY [H]

Synonym: Rmet_1524

Alternate gene names: 94310466

Gene position: 1646529-1647158 (Clockwise)

Preceding gene: 94310465

Following gene: 94310467

Centisome position: 41.92

GC content: 61.11

Gene sequence:

>630_bases
ATGAGCACCGCCGCAAAGAACGAGCTTGCGTCGCACGAGTTGCCTGCGACGCCGATGGATCCGGCGCTGGCCGCAAACCG
CGAGGGCAAGATCAAGGTGTCCATGATCGGTCTGTGCGGTTGCTGGGGCTGCACCTTGTCCTTTCTCGACATGGACGAGC
GGCTCCTGCCGCTGTTGGAGAAAATCACCATCCTGCGCTCGTCGCTGACCGATATCAAACGAATCCCCGAGCGCTGTGCG
ATCGGATTCGTCGAAGGCGGCGTTGCGAACGAGGAGAACATCGAAACGCTGGAGCACTTCCGCGAGAACTGCGACATCCT
GATCTCGGTCGGGGCGTGCGCGGTGTGGGGCGGTGTGCCCGCGATGCGCAACGTCGTCGAGCTGAAGGACTGCCTGGCGG
AGGCCTACGTCAACTCGGCGACCGCCGTGGCGGGCGCCAAGGCCGTCATCCCGTTCCATCCGGATATTCCCAGGATCACC
ACCAAGGTTTACCCCTGTCATGAGGTGGTCAAGATGGATTATTTCATCCCGGGGTGTCCTCCGGATGGAGACGCCATCTT
CAAGGTCCTGGACGATCTGGTCAACGGGCGTCCATTCGATTTGCCGAGCTCGATCAATCGCTACGATTGA

Upstream 100 bases:

>100_bases
TTCTCGAGAAACGGGTCGGCTACGACGACCCCATCGGACAACGCAAGTACGAAATCCAGTCGGTGCGCGCACGCGCGCTG
GGCCTGGAAGGAGTGGACAA

Downstream 100 bases:

>100_bases
TAAACGGAGGTAATGTCATGAGCAGAAAACTGGTTATCGATCCCGTGACCCGTATCGAGGGTCACGGCAAGGTCACGGTG
CACCTGGATGACGACAATAA

Product: NAD-reducing hydrogenase hoxS delta subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 209; Mature: 208

Protein sequence:

>209_residues
MSTAAKNELASHELPATPMDPALAANREGKIKVSMIGLCGCWGCTLSFLDMDERLLPLLEKITILRSSLTDIKRIPERCA
IGFVEGGVANEENIETLEHFRENCDILISVGACAVWGGVPAMRNVVELKDCLAEAYVNSATAVAGAKAVIPFHPDIPRIT
TKVYPCHEVVKMDYFIPGCPPDGDAIFKVLDDLVNGRPFDLPSSINRYD

Sequences:

>Translated_209_residues
MSTAAKNELASHELPATPMDPALAANREGKIKVSMIGLCGCWGCTLSFLDMDERLLPLLEKITILRSSLTDIKRIPERCA
IGFVEGGVANEENIETLEHFRENCDILISVGACAVWGGVPAMRNVVELKDCLAEAYVNSATAVAGAKAVIPFHPDIPRIT
TKVYPCHEVVKMDYFIPGCPPDGDAIFKVLDDLVNGRPFDLPSSINRYD
>Mature_208_residues
STAAKNELASHELPATPMDPALAANREGKIKVSMIGLCGCWGCTLSFLDMDERLLPLLEKITILRSSLTDIKRIPERCAI
GFVEGGVANEENIETLEHFRENCDILISVGACAVWGGVPAMRNVVELKDCLAEAYVNSATAVAGAKAVIPFHPDIPRITT
KVYPCHEVVKMDYFIPGCPPDGDAIFKVLDDLVNGRPFDLPSSINRYD

Specific function: Unknown

COG id: COG1941

COG function: function code C; Coenzyme F420-reducing hydrogenase, gamma subunit

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006137 [H]

Pfam domain/function: PF01058 Oxidored_q6 [H]

EC number: =1.12.1.2 [H]

Molecular weight: Translated: 22761; Mature: 22629

Theoretical pI: Translated: 4.69; Mature: 4.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.3 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
7.2 %Cys+Met (Translated Protein)
4.3 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
6.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTAAKNELASHELPATPMDPALAANREGKIKVSMIGLCGCWGCTLSFLDMDERLLPLLE
CCCCHHHHHHHCCCCCCCCCCHHHCCCCCCEEEEEEEHHHHHHHHHHHHCCHHHHHHHHH
KITILRSSLTDIKRIPERCAIGFVEGGVANEENIETLEHFRENCDILISVGACAVWGGVP
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHCCCH
AMRNVVELKDCLAEAYVNSATAVAGAKAVIPFHPDIPRITTKVYPCHEVVKMDYFIPGCP
HHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHCCCCHHHHHHHHCCCCCCC
PDGDAIFKVLDDLVNGRPFDLPSSINRYD
CCHHHHHHHHHHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure 
STAAKNELASHELPATPMDPALAANREGKIKVSMIGLCGCWGCTLSFLDMDERLLPLLE
CCCHHHHHHHCCCCCCCCCCHHHCCCCCCEEEEEEEHHHHHHHHHHHHCCHHHHHHHHH
KITILRSSLTDIKRIPERCAIGFVEGGVANEENIETLEHFRENCDILISVGACAVWGGVP
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHCCCH
AMRNVVELKDCLAEAYVNSATAVAGAKAVIPFHPDIPRITTKVYPCHEVVKMDYFIPGCP
HHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHCCCCHHHHHHHHCCCCCCC
PDGDAIFKVLDDLVNGRPFDLPSSINRYD
CCHHHHHHHHHHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2188945; 12948488; 2496982 [H]