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The map label for this gene is yeaM [C]

Identifier: 94310432

GI number: 94310432

Start: 1610418

End: 1611011

Strand: Reverse

Name: yeaM [C]

Synonym: Rmet_1490

Alternate gene names: 94310432

Gene position: 1611011-1610418 (Counterclockwise)

Preceding gene: 94310434

Following gene: 94310423

Centisome position: 41.01

GC content: 55.72

Gene sequence:

>594_bases
GTGACACACAGCGCACGTGTTCACGGGACAATGTCAGGCTGGGTGGGCCATCTTGCCCCTGAGCTATCTTTGGACCTCCC
TGGCCGGCCGACGGCCTTCAGGCAAAGTGCCTTATCAGCTGCAATTCTTGAAAGATTGCCTGGGAGCGGAGTGTCCTCCG
CGAGCGACAAACGTGAGCTTCGTCTGCTAGAGGCCCTCGTCGATGAGTTGGGTTTGCTCCCGCCCCAGCCTATGTGCTTG
CCGTACCCTAAGACTTCTAGGCTCGCGGATATCGCAAGAAAAATTATTGATGACTTGGCAGTAGCAAATTCTCTTGACGA
CATGGCCGCGCTAGCATTCATGTCCAGGCGAAGTCTCACGCGCCAGTTTCGGGCGGAGACTGGGATGTCAATCGTGGAGT
GGCGTGATGCCGCTCGCATGCAGCGGGCTGTGCAATTGTTGGCAGCGGGGCATAGCGTGACCAGCATCGCGTATACGCTC
GGATACGATGGAGCAAGCAGATTCATAGATAAATTCAGTGCAACTTTCGGCGTCACACCGAAGCAGTTCTCCCTTAGATC
CATCAGAAATCCGCTGCGCGAAGATGCTGATTGA

Upstream 100 bases:

>100_bases
ACCCCCGCGCCAGTGCTAGCTTTGCGTACCGTCACTTATTGCACTGAAAACGAGGAGACCCCTAGTAGCGCCTGGGCAAA
TTGGGTGGATACCACCCGAG

Downstream 100 bases:

>100_bases
TGCTTACGTCACGCTAAACCACGCTCCCGGCCAAATCCCCAAGACACTCCACCGTTGCGCACGGTGGCGGTGAGTTGCTG
TCCCAGCCTTTGTTCGATTA

Product: putative transcriptional regulator (fragment)

Products: NA

Alternate protein names: Transcriptional Regulator AraC Family; Transcriptional Regulator; AraC Family Transcription Regulator; AraC Family Regulatory Protein; AraC-Family Transcriptional Regulator; Transcriptional Regulator AraC Family Protein; Transcriptional Regulator AraC/XylS Family; Helix-Turn-Helix Domain-Containing Protein; AraC-Type Regulatory Protein; Helix-Turn-Helix Protein; AraC Family Regulatory Helix-Turn-Helix; Transcriptional Regulator AraC; HTH-Type Transcriptional Regulator YeaM; HTH-Type Transcriptional Regulator; Helix-Turn-Helix AraC Domain-Containing Protein; AraC Family Regulatory Helix-Turn-Helix Protein; LOW QUALITY PROTEIN AraC-Family Transcriptional Regulator; Transcriptional Regulatory Protein; AraC-Family Regulatory Protein; Transcriptional Regulator AraC-Family; Bacterial Regulatory Helix-Turn-Helix Protein; Pyridoxamine 5-Phosphate Oxidase-Related Protein; Transcriptional Regulator Protein AraC Family; Transcriptional Regulator Protein; HTH-Type Transcriptional Regulator AraC Family; LOW QUALITY PROTEIN AraC Family Transcriptional Regulator; HTH-Type Transcriptional Regulator Glxa; AraC Family Transcription Regulator Protein; Helix-Turn-Helix AraC Domain Protein; Cupin Domain-Containing Protein

Number of amino acids: Translated: 197; Mature: 196

Protein sequence:

>197_residues
MTHSARVHGTMSGWVGHLAPELSLDLPGRPTAFRQSALSAAILERLPGSGVSSASDKRELRLLEALVDELGLLPPQPMCL
PYPKTSRLADIARKIIDDLAVANSLDDMAALAFMSRRSLTRQFRAETGMSIVEWRDAARMQRAVQLLAAGHSVTSIAYTL
GYDGASRFIDKFSATFGVTPKQFSLRSIRNPLREDAD

Sequences:

>Translated_197_residues
MTHSARVHGTMSGWVGHLAPELSLDLPGRPTAFRQSALSAAILERLPGSGVSSASDKRELRLLEALVDELGLLPPQPMCL
PYPKTSRLADIARKIIDDLAVANSLDDMAALAFMSRRSLTRQFRAETGMSIVEWRDAARMQRAVQLLAAGHSVTSIAYTL
GYDGASRFIDKFSATFGVTPKQFSLRSIRNPLREDAD
>Mature_196_residues
THSARVHGTMSGWVGHLAPELSLDLPGRPTAFRQSALSAAILERLPGSGVSSASDKRELRLLEALVDELGLLPPQPMCLP
YPKTSRLADIARKIIDDLAVANSLDDMAALAFMSRRSLTRQFRAETGMSIVEWRDAARMQRAVQLLAAGHSVTSIAYTLG
YDGASRFIDKFSATFGVTPKQFSLRSIRNPLREDAD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1788091, Length=164, Percent_Identity=27.4390243902439, Blast_Score=61, Evalue=4e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21524; Mature: 21393

Theoretical pI: Translated: 9.66; Mature: 9.66

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTHSARVHGTMSGWVGHLAPELSLDLPGRPTAFRQSALSAAILERLPGSGVSSASDKREL
CCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
RLLEALVDELGLLPPQPMCLPYPKTSRLADIARKIIDDLAVANSLDDMAALAFMSRRSLT
HHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RQFRAETGMSIVEWRDAARMQRAVQLLAAGHSVTSIAYTLGYDGASRFIDKFSATFGVTP
HHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCC
KQFSLRSIRNPLREDAD
HHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
THSARVHGTMSGWVGHLAPELSLDLPGRPTAFRQSALSAAILERLPGSGVSSASDKREL
CCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
RLLEALVDELGLLPPQPMCLPYPKTSRLADIARKIIDDLAVANSLDDMAALAFMSRRSLT
HHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RQFRAETGMSIVEWRDAARMQRAVQLLAAGHSVTSIAYTLGYDGASRFIDKFSATFGVTP
HHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCC
KQFSLRSIRNPLREDAD
HHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA