Click here to switch to the map view.

The map label for this gene is ydcN [C]

Identifier: 94310423

GI number: 94310423

Start: 1602448

End: 1602741

Strand: Reverse

Name: ydcN [C]

Synonym: Rmet_1481

Alternate gene names: 94310423

Gene position: 1602741-1602448 (Counterclockwise)

Preceding gene: 94310432

Following gene: 94310421

Centisome position: 40.8

GC content: 67.69

Gene sequence:

>294_bases
ATGCAGAAGCGAACCGTCCAGCGCGGCCGACCGGCCGGCTCCACCACCCACGACGCCGAGTTGGCTCACGCCTTCGGCGC
GGCGGTGCGTGCGCTGCGGATGGAACGCGGAATCGCGCAGGAATCGCTGGCACACCAGGCCGGCATCGAGCGTTCCCACA
TGGGCAAGATCGAACGCGGCGAGCACATGCCCACGCTGGCGATCATCTTCAAGATAGCTGGCGCGCTCGAATGCAGCACG
GCCGTGCTGATGAGCGAGGCTGAAAGCCAGCTCGCAGCAGCGGCCCAGCCGTAG

Upstream 100 bases:

>100_bases
GATTTCCGTAAAAGCGTAGAACCACAAAAAAGGATCGAATCGAATGAATGAGTTAAAGATAACGTGGTTTTAATTGTGCT
GCGAATTGACGCTTCTGTCC

Downstream 100 bases:

>100_bases
GCGACGGCCCGGCCGATCCGGCGAAAGCCGGTTCGGCGGTGTTCAAGGGGCGCCAAGTGCAACGCGGCGGGGATGGGCCT
TGCGCCGATCCCCGGAGGGC

Product: putative DNA-binding transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator; Transcriptional Regulator XRE Family; Helix-Turn-Helix Family; Transcriptional Regulator XRE Family Protein; Transcription Regulator Protein; HTH Transcriptional Regulator

Number of amino acids: Translated: 97; Mature: 97

Protein sequence:

>97_residues
MQKRTVQRGRPAGSTTHDAELAHAFGAAVRALRMERGIAQESLAHQAGIERSHMGKIERGEHMPTLAIIFKIAGALECST
AVLMSEAESQLAAAAQP

Sequences:

>Translated_97_residues
MQKRTVQRGRPAGSTTHDAELAHAFGAAVRALRMERGIAQESLAHQAGIERSHMGKIERGEHMPTLAIIFKIAGALECST
AVLMSEAESQLAAAAQP
>Mature_97_residues
MQKRTVQRGRPAGSTTHDAELAHAFGAAVRALRMERGIAQESLAHQAGIERSHMGKIERGEHMPTLAIIFKIAGALECST
AVLMSEAESQLAAAAQP

Specific function: Unknown

COG id: COG1396

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 10332; Mature: 10332

Theoretical pI: Translated: 8.57; Mature: 8.57

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
5.2 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
5.2 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQKRTVQRGRPAGSTTHDAELAHAFGAAVRALRMERGIAQESLAHQAGIERSHMGKIERG
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCHHHCCCCCCC
EHMPTLAIIFKIAGALECSTAVLMSEAESQLAAAAQP
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MQKRTVQRGRPAGSTTHDAELAHAFGAAVRALRMERGIAQESLAHQAGIERSHMGKIERG
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCHHHCCCCCCC
EHMPTLAIIFKIAGALECSTAVLMSEAESQLAAAAQP
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA