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The map label for this gene is lytT [C]

Identifier: 94310323

GI number: 94310323

Start: 1490576

End: 1491397

Strand: Direct

Name: lytT [C]

Synonym: Rmet_1381

Alternate gene names: 94310323

Gene position: 1490576-1491397 (Clockwise)

Preceding gene: 94310322

Following gene: 94310324

Centisome position: 37.95

GC content: 63.87

Gene sequence:

>822_bases
ATGTCTCCGACGCTGCTGATCGCCGACGACGAACCGTTGCTCGCGCGCGTGCTGGAATCCGAACTGAAGGCGCTGTGGCC
AGAGGCCCAGATCGTCGCCGTGGTGCATGACGGCGTGGCGGCGCTGGAGGCCACGCGCGATCAGCAACCCGATGTGGCCT
TCCTTGATATCCGGATGCCGGGTATGAGTGGCATGGACGTGGCTCGCGAGTTGATCGAATTCGACCGGCCGCCGCTGGTG
GTGTTCGTCACCGCCTATGACCAGTTCGCACTAGAAGCCTTCGAGCGCGCGGCGGTCGATTACGTGCTCAAGCCCGTGCA
GCATGAGCGGCTGGAAGCCACCGTCGGCCGCCTGAAGGCGCGCATGGCCGCCCGGATCGAAGCGGAGGAAGAGGGCGATG
CCGATAGCGACATCGGCACGATGGTCGACACGGACCGATTGGGGCAATTACTGCAGCGGCTGGAAATGCTGGAGAGACCC
GCACAGGCACGGGGCCAGTATCTGCGATTCATCAAGGCGTTGGTGGGGCAGGAGGTGCGCATCATCCCGGTGGACGAAGT
GGTCTATCTGGAAGCCACCGACAAGTACGTGAACGTGGTGTCCAGCAACGGCGAGGCGCTGATCCGCACGAGCCTGAGGG
AGTTGATGCAGCAACTCGACCCTGACCGTTTCTGGCAGATCCACCGCGGCACGGTGGTCAATATCGACTGCGTGGCCAGC
GCGGCGACGCAATCGCTTGGGCGCCTGTCGCTCAAGCTGCGCAATCGCCCGGAATCGCTGGCGGTCGCCAGGCAGTACGC
CCATCTGTTCAAGCAGATGTAG

Upstream 100 bases:

>100_bases
GTTCGCGCCGCTGCGGGCGCCGCCGATCTGCAACATGCGCCTGCCGGTGTGGCCCCGGCAGTTTCCCGATCCTGATTGCA
CAGCCTGACAATTCATCCCC

Downstream 100 bases:

>100_bases
CGCGGCCGAGTGTCTCCAAATTCCTCTAAGATGACTGCCTCGTCAGTTCCCATCCAGAGGAGTCAGAGATGAAGCCTGTT
ATGAAGCCCGTAACCACCGA

Product: response regulator containing a LytTR DNA-binding domain

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 273; Mature: 272

Protein sequence:

>273_residues
MSPTLLIADDEPLLARVLESELKALWPEAQIVAVVHDGVAALEATRDQQPDVAFLDIRMPGMSGMDVARELIEFDRPPLV
VFVTAYDQFALEAFERAAVDYVLKPVQHERLEATVGRLKARMAARIEAEEEGDADSDIGTMVDTDRLGQLLQRLEMLERP
AQARGQYLRFIKALVGQEVRIIPVDEVVYLEATDKYVNVVSSNGEALIRTSLRELMQQLDPDRFWQIHRGTVVNIDCVAS
AATQSLGRLSLKLRNRPESLAVARQYAHLFKQM

Sequences:

>Translated_273_residues
MSPTLLIADDEPLLARVLESELKALWPEAQIVAVVHDGVAALEATRDQQPDVAFLDIRMPGMSGMDVARELIEFDRPPLV
VFVTAYDQFALEAFERAAVDYVLKPVQHERLEATVGRLKARMAARIEAEEEGDADSDIGTMVDTDRLGQLLQRLEMLERP
AQARGQYLRFIKALVGQEVRIIPVDEVVYLEATDKYVNVVSSNGEALIRTSLRELMQQLDPDRFWQIHRGTVVNIDCVAS
AATQSLGRLSLKLRNRPESLAVARQYAHLFKQM
>Mature_272_residues
SPTLLIADDEPLLARVLESELKALWPEAQIVAVVHDGVAALEATRDQQPDVAFLDIRMPGMSGMDVARELIEFDRPPLVV
FVTAYDQFALEAFERAAVDYVLKPVQHERLEATVGRLKARMAARIEAEEEGDADSDIGTMVDTDRLGQLLQRLEMLERPA
QARGQYLRFIKALVGQEVRIIPVDEVVYLEATDKYVNVVSSNGEALIRTSLRELMQQLDPDRFWQIHRGTVVNIDCVASA
ATQSLGRLSLKLRNRPESLAVARQYAHLFKQM

Specific function: Unknown

COG id: COG3279

COG function: function code KT; Response regulator of the LytR/AlgR family

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788724, Length=269, Percent_Identity=23.7918215613383, Blast_Score=94, Evalue=7e-21,
Organism=Escherichia coli, GI87082052, Length=269, Percent_Identity=27.8810408921933, Blast_Score=91, Evalue=6e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR007492
- InterPro:   IPR001789 [H]

Pfam domain/function: PF04397 LytTR; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 30666; Mature: 30534

Theoretical pI: Translated: 4.66; Mature: 4.66

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50930 HTH_LYTTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSPTLLIADDEPLLARVLESELKALWPEAQIVAVVHDGVAALEATRDQQPDVAFLDIRMP
CCCCEEEECCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHCCCCCCCEEEEEEECC
GMSGMDVARELIEFDRPPLVVFVTAYDQFALEAFERAAVDYVLKPVQHERLEATVGRLKA
CCCCHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RMAARIEAEEEGDADSDIGTMVDTDRLGQLLQRLEMLERPAQARGQYLRFIKALVGQEVR
HHHHHCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCEE
IIPVDEVVYLEATDKYVNVVSSNGEALIRTSLRELMQQLDPDRFWQIHRGTVVNIDCVAS
EEECCCEEEEEECCHHHEEECCCCCHHHHHHHHHHHHHCCHHHHEEEECCEEEEHHHHHH
AATQSLGRLSLKLRNRPESLAVARQYAHLFKQM
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SPTLLIADDEPLLARVLESELKALWPEAQIVAVVHDGVAALEATRDQQPDVAFLDIRMP
CCCEEEECCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHCCCCCCCEEEEEEECC
GMSGMDVARELIEFDRPPLVVFVTAYDQFALEAFERAAVDYVLKPVQHERLEATVGRLKA
CCCCHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RMAARIEAEEEGDADSDIGTMVDTDRLGQLLQRLEMLERPAQARGQYLRFIKALVGQEVR
HHHHHCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCEE
IIPVDEVVYLEATDKYVNVVSSNGEALIRTSLRELMQQLDPDRFWQIHRGTVVNIDCVAS
EEECCCEEEEEECCHHHEEECCCCCHHHHHHHHHHHHHCCHHHHEEEECCEEEEHHHHHH
AATQSLGRLSLKLRNRPESLAVARQYAHLFKQM
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA