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The map label for this gene is rraA [C]

Identifier: 94310324

GI number: 94310324

Start: 1491466

End: 1491978

Strand: Direct

Name: rraA [C]

Synonym: Rmet_1382

Alternate gene names: 94310324

Gene position: 1491466-1491978 (Clockwise)

Preceding gene: 94310323

Following gene: 94310325

Centisome position: 37.97

GC content: 64.33

Gene sequence:

>513_bases
ATGAAGCCTGTTATGAAGCCCGTAACCACCGATATTTGCGACGCCAATGAAGACCGCCTGGCCGATGGCTCCCTGCGCGT
TCTGACGCCGGGGTTCCTCCATTTCGGCAAGCGCATGGCCTTTTCGGGGCCTGCCGTGACGCTCAAAGTGTTCGAGGACA
ACTCAATGGTGCGCGCCACGCTGGAAACGCCGGGTGCGGGTCGGGTGCTGGTAGTGGATGGGGGTGGTTCGATGCGTTGC
GCGCTGGTTGGCGGGATGCTCGGCGTGCTGGCCGAGAAGAATGGCTGGGCTGGGATCATCGTGAACGGCTGCGTGCGGGA
TTCGGAAGAGCTCAAGGTGTGCGACGTCGGCATCCGCGCGCTGGGCGTGCATCCGCAGAAAAGCCAGAAGCGCAATGTCG
GTCAGGAGGACGTGACCGTGCAGATGCCGGGTGCGGTCGTGCGGCCGGGCAACTGGATCTACGCGGACGCCGATGGCGTG
CTGGTCTCCGACGAGAAGCTGGACGGGGCCTGA

Upstream 100 bases:

>100_bases
GGCAGTACGCCCATCTGTTCAAGCAGATGTAGCGCGGCCGAGTGTCTCCAAATTCCTCTAAGATGACTGCCTCGTCAGTT
CCCATCCAGAGGAGTCAGAG

Downstream 100 bases:

>100_bases
GCCATGCCGCGAGTGTTTGTCTATGGCACGCTGCGTGCCGGCGAGGTCAATGACCTGAATCGCGCTGCCACGCGCCACGG
CATCGAGGCACCCACGCTGG

Product: ribonuclease activity regulator protein RraA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 170; Mature: 170

Protein sequence:

>170_residues
MKPVMKPVTTDICDANEDRLADGSLRVLTPGFLHFGKRMAFSGPAVTLKVFEDNSMVRATLETPGAGRVLVVDGGGSMRC
ALVGGMLGVLAEKNGWAGIIVNGCVRDSEELKVCDVGIRALGVHPQKSQKRNVGQEDVTVQMPGAVVRPGNWIYADADGV
LVSDEKLDGA

Sequences:

>Translated_170_residues
MKPVMKPVTTDICDANEDRLADGSLRVLTPGFLHFGKRMAFSGPAVTLKVFEDNSMVRATLETPGAGRVLVVDGGGSMRC
ALVGGMLGVLAEKNGWAGIIVNGCVRDSEELKVCDVGIRALGVHPQKSQKRNVGQEDVTVQMPGAVVRPGNWIYADADGV
LVSDEKLDGA
>Mature_170_residues
MKPVMKPVTTDICDANEDRLADGSLRVLTPGFLHFGKRMAFSGPAVTLKVFEDNSMVRATLETPGAGRVLVVDGGGSMRC
ALVGGMLGVLAEKNGWAGIIVNGCVRDSEELKVCDVGIRALGVHPQKSQKRNVGQEDVTVQMPGAVVRPGNWIYADADGV
LVSDEKLDGA

Specific function: Regulator Of Rnase E/Rne, Which Inhibits The Endonuclease Activity And Thereby Leads To Increase The Half-Life And Abundance Of Rnas. General Modulator Of RNA Abundance. Does Not Have Any Methyltransferase Activity. [C]

COG id: COG0684

COG function: function code H; Demethylmenaquinone methyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RraA family [H]

Homologues:

Organism=Escherichia coli, GI1790364, Length=164, Percent_Identity=39.6341463414634, Blast_Score=124, Evalue=5e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005493
- InterPro:   IPR010203 [H]

Pfam domain/function: PF03737 Methyltransf_6 [H]

EC number: NA

Molecular weight: Translated: 17964; Mature: 17964

Theoretical pI: Translated: 5.79; Mature: 5.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
6.5 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
6.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPVMKPVTTDICDANEDRLADGSLRVLTPGFLHFGKRMAFSGPAVTLKVFEDNSMVRAT
CCCCCCCCCHHHCCCCCCCCCCCCEEEECCHHHHHCCEEECCCCEEEEEEEECCCEEEEE
LETPGAGRVLVVDGGGSMRCALVGGMLGVLAEKNGWAGIIVNGCVRDSEELKVCDVGIRA
ECCCCCCEEEEEECCCCEEEEEHHHHHEEEECCCCCEEEEEECEECCCCCEEEEEECEEE
LGVHPQKSQKRNVGQEDVTVQMPGAVVRPGNWIYADADGVLVSDEKLDGA
ECCCCCCHHHHCCCCCCEEEECCCEEECCCCEEEECCCCEEEECCCCCCC
>Mature Secondary Structure
MKPVMKPVTTDICDANEDRLADGSLRVLTPGFLHFGKRMAFSGPAVTLKVFEDNSMVRAT
CCCCCCCCCHHHCCCCCCCCCCCCEEEECCHHHHHCCEEECCCCEEEEEEEECCCEEEEE
LETPGAGRVLVVDGGGSMRCALVGGMLGVLAEKNGWAGIIVNGCVRDSEELKVCDVGIRA
ECCCCCCEEEEEECCCCEEEEEHHHHHEEEECCCCCEEEEEECEECCCCCEEEEEECEEE
LGVHPQKSQKRNVGQEDVTVQMPGAVVRPGNWIYADADGVLVSDEKLDGA
ECCCCCCHHHHCCCCCCEEEECCCEEECCCCEEEECCCCEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA