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The map label for this gene is rpoZ

Identifier: 94309802

GI number: 94309802

Start: 937386

End: 937589

Strand: Direct

Name: rpoZ

Synonym: Rmet_0857

Alternate gene names: 94309802

Gene position: 937386-937589 (Clockwise)

Preceding gene: 94309801

Following gene: 94309803

Centisome position: 23.86

GC content: 62.25

Gene sequence:

>204_bases
ATGGCGCGTATTACCGTCGAAGATTGTCTGAAACACATCCCGAACCGCTTCGAGCTCGCCCTCGCCGCGACGTACCGTGC
ACGTCAGCTCGTGCAGGGCCACACGCCCAAGGTCGAGGCAAAGGACAAGCCCACCGTGGTGGCGCTCCGCGAGATCGCAT
CGGGCCAGGTTGGCATCGAGATGCTGAAGAAGGTACCGACCTGA

Upstream 100 bases:

>100_bases
GCTCGGAATTCACTAAAGCAGGCGCGCGGCCGGAAGGTTCCGGCCGCGTGCTGTAAAATACTGGCCTGTCGAACAGGTTT
CATCCCAAGGTGGATTTGAT

Downstream 100 bases:

>100_bases
TTGCCGGGACGGCCTGTGGTTCATCGTCGCTTCGCATATATGCGCTTTCAGCCGCGCGTTCCGCTGAATGACAGGGGCCG
TCCCCATGACTTTCCCGCCG

Product: DNA-directed RNA polymerase subunit omega

Products: NA

Alternate protein names: RNAP omega subunit; RNA polymerase omega subunit; Transcriptase subunit omega

Number of amino acids: Translated: 67; Mature: 66

Protein sequence:

>67_residues
MARITVEDCLKHIPNRFELALAATYRARQLVQGHTPKVEAKDKPTVVALREIASGQVGIEMLKKVPT

Sequences:

>Translated_67_residues
MARITVEDCLKHIPNRFELALAATYRARQLVQGHTPKVEAKDKPTVVALREIASGQVGIEMLKKVPT
>Mature_66_residues
ARITVEDCLKHIPNRFELALAATYRARQLVQGHTPKVEAKDKPTVVALREIASGQVGIEMLKKVPT

Specific function: Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits

COG id: COG1758

COG function: function code K; DNA-directed RNA polymerase, subunit K/omega

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA polymerase subunit omega family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RPOZ_CUPNH (Q0KD22)

Other databases:

- EMBL:   AM260479
- RefSeq:   YP_725467.1
- STRING:   Q0KD22
- GeneID:   4249597
- GenomeReviews:   AM260479_GR
- KEGG:   reh:H16_A0954
- eggNOG:   COG1758
- HOGENOM:   HBG742204
- OMA:   NRFLLVM
- PhylomeDB:   Q0KD22
- ProtClustDB:   PRK00392
- BioCyc:   REUT381666:H16_A0954-MONOMER
- HAMAP:   MF_00366
- InterPro:   IPR003716
- InterPro:   IPR006110
- InterPro:   IPR012293
- Gene3D:   G3DSA:3.90.940.10
- TIGRFAMs:   TIGR00690

Pfam domain/function: PF01192 RNA_pol_Rpb6; SSF63562 RNA_pol_omega

EC number: =2.7.7.6

Molecular weight: Translated: 7439; Mature: 7308

Theoretical pI: Translated: 10.28; Mature: 10.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARITVEDCLKHIPNRFELALAATYRARQLVQGHTPKVEAKDKPTVVALREIASGQVGIE
CCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCHHHHH
MLKKVPT
HHHHCCC
>Mature Secondary Structure 
ARITVEDCLKHIPNRFELALAATYRARQLVQGHTPKVEAKDKPTVVALREIASGQVGIE
CCCCHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCHHHHH
MLKKVPT
HHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA