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The map label for this gene is hcpA [H]

Identifier: 94309564

GI number: 94309564

Start: 680084

End: 680569

Strand: Reverse

Name: hcpA [H]

Synonym: Rmet_0619

Alternate gene names: 94309564

Gene position: 680569-680084 (Counterclockwise)

Preceding gene: 94309565

Following gene: 94309563

Centisome position: 17.33

GC content: 56.79

Gene sequence:

>486_bases
ATGGCAATTCCCGCATATATGTGGATCAAGGACGACGGTGGCGCCGATATCAAAGGCTCGGTCACCGTCACGGAGCGCGA
GGGCAGCGTCGAAGTCGTGGCATTCGATCACTCGGTCAACATCCCGACCGACTCCAACACGGGCAAGCTGACCGGCACGC
GCGTGCACAAGCCGATCCTGTTCACCAAGGAAACCGACGCTTCGACCCCGTATCTATACAAGGCGGTCACCAGCGGCCAG
ACGCTCAAGTCGATCGAGATCAAGTGGTACAAAATTGACGACGCCGGCAAGGAGAAGGAGTACTTCAACACCAAGCTGGA
GAACGTGAAGGTGGTTGGCGTGACGGCCAAGATGCTGGACATCAAGAACCCGGCTTACGAAAAACACAATCACCTCGAAG
ACGTCGAGTTGCGCTACGAGAGGATTACCTGGTCGTACAAGGACGGCAACATCATCCACGCCGACAGCTGGAACGAGCGC
TCGTAA

Upstream 100 bases:

>100_bases
TCGAGATCACGCTAGTCCCCGATTGTCGCGATGAGCAGCACGACATTCGGGAATCCCTGGGCCATCCGGCCTGTACATCG
CAGTAGAAGGAGCAAGAGAA

Downstream 100 bases:

>100_bases
GCGCCATCGCAGCCGGTGCCTGGCGTCGGCTAGCGAACCAGCGCTCTCGTCTTCTCCACTGCGGCACCGCAGCGATACGC
CACCATGACCACCCGCGATT

Product: hypothetical protein

Products: NA

Alternate protein names: Secreted protein hcp [H]

Number of amino acids: Translated: 161; Mature: 160

Protein sequence:

>161_residues
MAIPAYMWIKDDGGADIKGSVTVTEREGSVEVVAFDHSVNIPTDSNTGKLTGTRVHKPILFTKETDASTPYLYKAVTSGQ
TLKSIEIKWYKIDDAGKEKEYFNTKLENVKVVGVTAKMLDIKNPAYEKHNHLEDVELRYERITWSYKDGNIIHADSWNER
S

Sequences:

>Translated_161_residues
MAIPAYMWIKDDGGADIKGSVTVTEREGSVEVVAFDHSVNIPTDSNTGKLTGTRVHKPILFTKETDASTPYLYKAVTSGQ
TLKSIEIKWYKIDDAGKEKEYFNTKLENVKVVGVTAKMLDIKNPAYEKHNHLEDVELRYERITWSYKDGNIIHADSWNER
S
>Mature_160_residues
AIPAYMWIKDDGGADIKGSVTVTEREGSVEVVAFDHSVNIPTDSNTGKLTGTRVHKPILFTKETDASTPYLYKAVTSGQT
LKSIEIKWYKIDDAGKEKEYFNTKLENVKVVGVTAKMLDIKNPAYEKHNHLEDVELRYERITWSYKDGNIIHADSWNERS

Specific function: Unknown

COG id: COG3157

COG function: function code S; Hemolysin-coregulated protein (uncharacterized)

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hcp1 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017728
- InterPro:   IPR008514 [H]

Pfam domain/function: PF05638 DUF796 [H]

EC number: NA

Molecular weight: Translated: 18255; Mature: 18123

Theoretical pI: Translated: 6.36; Mature: 6.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAIPAYMWIKDDGGADIKGSVTVTEREGSVEVVAFDHSVNIPTDSNTGKLTGTRVHKPIL
CCCCEEEEEECCCCCCEECEEEEEECCCCEEEEEECCEEECCCCCCCCCEEECEECCCEE
FTKETDASTPYLYKAVTSGQTLKSIEIKWYKIDDAGKEKEYFNTKLENVKVVGVTAKMLD
EEECCCCCCCEEEEEECCCCEEEEEEEEEEEECCCCCCCHHHCCCCCCEEEEEEEEEEEE
IKNPAYEKHNHLEDVELRYERITWSYKDGNIIHADSWNERS
CCCCCCCCCCCCCCEEEEEEEEEEEECCCCEEECCCCCCCC
>Mature Secondary Structure 
AIPAYMWIKDDGGADIKGSVTVTEREGSVEVVAFDHSVNIPTDSNTGKLTGTRVHKPIL
CCCEEEEEECCCCCCEECEEEEEECCCCEEEEEECCEEECCCCCCCCCEEECEECCCEE
FTKETDASTPYLYKAVTSGQTLKSIEIKWYKIDDAGKEKEYFNTKLENVKVVGVTAKMLD
EEECCCCCCCEEEEEECCCCEEEEEEEEEEEECCCCCCCHHHCCCCCCEEEEEEEEEEEE
IKNPAYEKHNHLEDVELRYERITWSYKDGNIIHADSWNERS
CCCCCCCCCCCCCCEEEEEEEEEEEECCCCEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]