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The map label for this gene is oprF [H]

Identifier: 94309565

GI number: 94309565

Start: 680584

End: 682302

Strand: Reverse

Name: oprF [H]

Synonym: Rmet_0620

Alternate gene names: 94309565

Gene position: 682302-680584 (Counterclockwise)

Preceding gene: 94309566

Following gene: 94309564

Centisome position: 17.37

GC content: 67.25

Gene sequence:

>1719_bases
GTGACCGGCTACCCCTACCGCGGCCTGTTCGGCTGGATCGCCGCGCTCGCGCTAGCCTGGCTGGCGTTCAGCTCTCCCTG
GCAGCCTGCGTGGAACCTATTACTCGGGACGTTCGTCATCGCGGTGGTAGGTACCGCCATCGTGGTAGCCACACGGCGTG
TTCGTGCGCGCCAACGTGCCTCCCGAGACGTGCTTGAGGCCATCAACGCGTCGCTGGATGCGCTGCCGGGCAACATTCGC
CGCAACACGCCGTTGGCACTGGTGGTGGGAGATCGCGCCGGAGCGCCAGCGCGGGCATTCGGCGAAGCGCTGGTCCAGAT
CACCGATACAGCGATCTGGGTGCGCGTCGACGATTCAACGCGGCTAGCGCACGTAGCCGATGCACTCAAGCGCTGGCGCG
AAGGACAAGGCCCGGACGCCGTTGCCTGCCTGATTGCTGCGGATCACGCTCGCGACGCCGCCGTGCTGACCGCCGCACTC
AAGCGCTGGCGTGTCGCCATTGGCGAAGCCAGCCGGGCCGTTGGCTATTCCTTGCCCGTCTGCGTTGCCGTCTATGCCGA
AGAAGCCGGAGGACCGGCCGACGATTGCGCATGGTTCGGCGTGTCCGGCGCCACCGTCCCTGCAGCCGGAACGCTGTGCG
CGCAGCTTTCGGATCGTCTCGTGAGCTATCCACAGGCAGCCGTCCCGGCAGACCGCGATGCACACATGCACCGCGCGGCC
CGCCTCGACGCGCTGGTCAGGTGGGCATCCGGCGCCTTGTTGCCGCCGTTGCGTGACGAGGGTCGTGATGGCTTGCGCAG
CGGCCCTCCCGTCGATATCACCGCGTTTGGGGTGACCGCCATCGACGGTGTGCCGGTCCCGGATTCTCTCTATGCGCGTT
TCGTGACGCAAGTAACCGGGTTGGCACGCGGCCCGGGAGCGGTACGCAACGCGTCTTATCCCTTGCCGGAGCCGCTACTG
CGCGGCATCGCCTTGCAGCCCGTGCAGCGGGCTATGCCGCGTGCAATGGCGCATGCGTTCGCCTGGCTCGCGCTCGCCTT
CTGCGCAGCGGCTACGGCATCCGCGTGGCAGAACCGTACCCTGGTCGCACGTGTCATGACCGACATGGCTCGTTATCGAG
TGATCGGCCCGGAGCATGATGTTGCGCGCGTGGATGCACTGCAGGCACTCAAGCGGGACCGCGATGAGCTCGATCATTAC
AGCCGGTCCGGCGTGCCGCCTCGCCTCGGGTTGGGCTTCTACCGCGGTGCCGGACTCCTCGCGCCGCTCAATACCCTGAT
CGCCGCCTATCAACCCCCGGCGCCGCTGCCCGCGACCATCGAACTCGACAGCCTGTCGCTCTTCAAGAGCGGTAGCGCGC
TGCTCAACCTCGGCTCCAATCGCGTGCTGATCGGTGCGCTGGAGATGATCAAGGCCCATCCCGACAAGCGCGTGCTCGTG
GCTGGGCACACAGACTCGGTGGGAGATTCGCGGGCCAACCTGAAGCTTTCCGAAGCACGCGCCGCGTCCGTGCGGGATTG
GCTGGCGGACGCCGCCGACTTGCCGGTCACCCGCTTTGCCATCCAGGGCTACGGCGAGACCCGTCCCAAGGCACCCAACG
AGCCGGAAGCCGGCCGTGCGGCCAACCGCCGCGTCGAGATCACGCTAGTCCCCGATTGTCGCGATGAGCAGCACGACATT
CGGGAATCCCTGGGCCATCCGGCCTGTACATCGCAGTAG

Upstream 100 bases:

>100_bases
TGGGTGGCCATTGCACTTGTCGGCGCTGGTTTGGTGTATTTTGCGCTGGATCGATGGCTGGCCGTCTCTATCGCCCGGCT
GGCCAGCTAAAAGGGACGTC

Downstream 100 bases:

>100_bases
AAGGAGCAAGAGAAATGGCAATTCCCGCATATATGTGGATCAAGGACGACGGTGGCGCCGATATCAAAGGCTCGGTCACC
GTCACGGAGCGCGAGGGCAG

Product: putative OmpA/MotB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 572; Mature: 571

Protein sequence:

>572_residues
MTGYPYRGLFGWIAALALAWLAFSSPWQPAWNLLLGTFVIAVVGTAIVVATRRVRARQRASRDVLEAINASLDALPGNIR
RNTPLALVVGDRAGAPARAFGEALVQITDTAIWVRVDDSTRLAHVADALKRWREGQGPDAVACLIAADHARDAAVLTAAL
KRWRVAIGEASRAVGYSLPVCVAVYAEEAGGPADDCAWFGVSGATVPAAGTLCAQLSDRLVSYPQAAVPADRDAHMHRAA
RLDALVRWASGALLPPLRDEGRDGLRSGPPVDITAFGVTAIDGVPVPDSLYARFVTQVTGLARGPGAVRNASYPLPEPLL
RGIALQPVQRAMPRAMAHAFAWLALAFCAAATASAWQNRTLVARVMTDMARYRVIGPEHDVARVDALQALKRDRDELDHY
SRSGVPPRLGLGFYRGAGLLAPLNTLIAAYQPPAPLPATIELDSLSLFKSGSALLNLGSNRVLIGALEMIKAHPDKRVLV
AGHTDSVGDSRANLKLSEARAASVRDWLADAADLPVTRFAIQGYGETRPKAPNEPEAGRAANRRVEITLVPDCRDEQHDI
RESLGHPACTSQ

Sequences:

>Translated_572_residues
MTGYPYRGLFGWIAALALAWLAFSSPWQPAWNLLLGTFVIAVVGTAIVVATRRVRARQRASRDVLEAINASLDALPGNIR
RNTPLALVVGDRAGAPARAFGEALVQITDTAIWVRVDDSTRLAHVADALKRWREGQGPDAVACLIAADHARDAAVLTAAL
KRWRVAIGEASRAVGYSLPVCVAVYAEEAGGPADDCAWFGVSGATVPAAGTLCAQLSDRLVSYPQAAVPADRDAHMHRAA
RLDALVRWASGALLPPLRDEGRDGLRSGPPVDITAFGVTAIDGVPVPDSLYARFVTQVTGLARGPGAVRNASYPLPEPLL
RGIALQPVQRAMPRAMAHAFAWLALAFCAAATASAWQNRTLVARVMTDMARYRVIGPEHDVARVDALQALKRDRDELDHY
SRSGVPPRLGLGFYRGAGLLAPLNTLIAAYQPPAPLPATIELDSLSLFKSGSALLNLGSNRVLIGALEMIKAHPDKRVLV
AGHTDSVGDSRANLKLSEARAASVRDWLADAADLPVTRFAIQGYGETRPKAPNEPEAGRAANRRVEITLVPDCRDEQHDI
RESLGHPACTSQ
>Mature_571_residues
TGYPYRGLFGWIAALALAWLAFSSPWQPAWNLLLGTFVIAVVGTAIVVATRRVRARQRASRDVLEAINASLDALPGNIRR
NTPLALVVGDRAGAPARAFGEALVQITDTAIWVRVDDSTRLAHVADALKRWREGQGPDAVACLIAADHARDAAVLTAALK
RWRVAIGEASRAVGYSLPVCVAVYAEEAGGPADDCAWFGVSGATVPAAGTLCAQLSDRLVSYPQAAVPADRDAHMHRAAR
LDALVRWASGALLPPLRDEGRDGLRSGPPVDITAFGVTAIDGVPVPDSLYARFVTQVTGLARGPGAVRNASYPLPEPLLR
GIALQPVQRAMPRAMAHAFAWLALAFCAAATASAWQNRTLVARVMTDMARYRVIGPEHDVARVDALQALKRDRDELDHYS
RSGVPPRLGLGFYRGAGLLAPLNTLIAAYQPPAPLPATIELDSLSLFKSGSALLNLGSNRVLIGALEMIKAHPDKRVLVA
GHTDSVGDSRANLKLSEARAASVRDWLADAADLPVTRFAIQGYGETRPKAPNEPEAGRAANRRVEITLVPDCRDEQHDIR
ESLGHPACTSQ

Specific function: Has porin activity, forming small water-filled channels. Also has a structural role in determining cell shape and ability to grow in low-osmolarity medium [H]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI48994946, Length=104, Percent_Identity=40.3846153846154, Blast_Score=67, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011250
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665
- InterPro:   IPR008722 [H]

Pfam domain/function: PF00691 OmpA; PF05736 OprF [H]

EC number: NA

Molecular weight: Translated: 61068; Mature: 60937

Theoretical pI: Translated: 9.00; Mature: 9.00

Prosite motif: PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTGYPYRGLFGWIAALALAWLAFSSPWQPAWNLLLGTFVIAVVGTAIVVATRRVRARQRA
CCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SRDVLEAINASLDALPGNIRRNTPLALVVGDRAGAPARAFGEALVQITDTAIWVRVDDST
HHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHEECEEEEEEECCCC
RLAHVADALKRWREGQGPDAVACLIAADHARDAAVLTAALKRWRVAIGEASRAVGYSLPV
HHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCHHHHCCCCCHH
CVAVYAEEAGGPADDCAWFGVSGATVPAAGTLCAQLSDRLVSYPQAAVPADRDAHMHRAA
HHEEEEHHCCCCCCHHHEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
RLDALVRWASGALLPPLRDEGRDGLRSGPPVDITAFGVTAIDGVPVPDSLYARFVTQVTG
HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEECEEEECCCCCCHHHHHHHHHHHHH
LARGPGAVRNASYPLPEPLLRGIALQPVQRAMPRAMAHAFAWLALAFCAAATASAWQNRT
CCCCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
LVARVMTDMARYRVIGPEHDVARVDALQALKRDRDELDHYSRSGVPPRLGLGFYRGAGLL
HHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHCCCCHH
APLNTLIAAYQPPAPLPATIELDSLSLFKSGSALLNLGSNRVLIGALEMIKAHPDKRVLV
HHHHHHHHHCCCCCCCCCEEEECCHHHHHCCCHHEECCCCEEEHHHHHHHHCCCCCEEEE
AGHTDSVGDSRANLKLSEARAASVRDWLADAADLPVTRFAIQGYGETRPKAPNEPEAGRA
ECCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHCCCHHHHEEECCCCCCCCCCCCCCCCCC
ANRRVEITLVPDCRDEQHDIRESLGHPACTSQ
CCCEEEEEECCCCCCHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
TGYPYRGLFGWIAALALAWLAFSSPWQPAWNLLLGTFVIAVVGTAIVVATRRVRARQRA
CCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SRDVLEAINASLDALPGNIRRNTPLALVVGDRAGAPARAFGEALVQITDTAIWVRVDDST
HHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHEECEEEEEEECCCC
RLAHVADALKRWREGQGPDAVACLIAADHARDAAVLTAALKRWRVAIGEASRAVGYSLPV
HHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCHHHHCCCCCHH
CVAVYAEEAGGPADDCAWFGVSGATVPAAGTLCAQLSDRLVSYPQAAVPADRDAHMHRAA
HHEEEEHHCCCCCCHHHEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
RLDALVRWASGALLPPLRDEGRDGLRSGPPVDITAFGVTAIDGVPVPDSLYARFVTQVTG
HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEECEEEECCCCCCHHHHHHHHHHHHH
LARGPGAVRNASYPLPEPLLRGIALQPVQRAMPRAMAHAFAWLALAFCAAATASAWQNRT
CCCCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
LVARVMTDMARYRVIGPEHDVARVDALQALKRDRDELDHYSRSGVPPRLGLGFYRGAGLL
HHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHCCCCHH
APLNTLIAAYQPPAPLPATIELDSLSLFKSGSALLNLGSNRVLIGALEMIKAHPDKRVLV
HHHHHHHHHCCCCCCCCCEEEECCHHHHHCCCHHEECCCCEEEHHHHHHHHCCCCCEEEE
AGHTDSVGDSRANLKLSEARAASVRDWLADAADLPVTRFAIQGYGETRPKAPNEPEAGRA
ECCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHCCCHHHHEEECCCCCCCCCCCCCCCCCC
ANRRVEITLVPDCRDEQHDIRESLGHPACTSQ
CCCEEEEEECCCCCCHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2447060; 10984043 [H]