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The map label for this gene is fimC [H]

Identifier: 94309520

GI number: 94309520

Start: 617165

End: 617935

Strand: Reverse

Name: fimC [H]

Synonym: Rmet_0575

Alternate gene names: 94309520

Gene position: 617935-617165 (Counterclockwise)

Preceding gene: 94309521

Following gene: 94309519

Centisome position: 15.73

GC content: 57.85

Gene sequence:

>771_bases
ATGTTCAAGACTTCAATCTGCCGCGCAGCCATTGCTGCCGTCCTCCTGGCAATGACTGCGCCTGGAACCCTTGCGTCCGT
GGTTTTGACCGGTACCCGCGTCATCTACCCGGAGTCGGAGCGGGAAGTCAGCCTCAAACTCACCAACGAAGGAGACGCAC
CCTCCCTGGTACAGGCATGGATCGACGACGGCGACCCCAATGCGACGCCGGAGAACGCGAAATCACTATTCGTACTCACG
CCGCCGCTGTTTAGACTGGACGCAAAGAAAGGTCAGACGCTACGCATCATTCAACTCCAGCAAGCGCTGTCTCGCGATCA
GGAATCGCTGTTCTGGCTCAACGTTCTCGAAGTCCCGCCAATCGCATCCAGCAGCAAGGATCCGCAGAATTCGCTTCAGT
TTGCCTTTCGGTCACGCATCAAGCTGTTCTTCCGTCCAACGGGATTGCCTGGCGACGCGGACAGCGCGCCCACCAAGGTT
ACCTGGCGCTTCGTACGCAAGGATGACGGCCATCATGTACTGACTGCAACAAATCCAACGCCGTACCACATCACCTACAC
AAAGGTCGAGGCAACCTCTGGCGGGCATGTGTACAGCAATGATGCCGGAGCAATGGTAAATCCCGGCGGCACAGTCGAGT
TTGCCATCGATGACGCGTCGCCCGTGTCCGGCGAACCCGCGCAGGTCAGTTACACGTTTATCTCGGACTATGGCGCCGGT
GTATCTGGCGTCCACAATGCGAAGCCAACACAGGAAGCGAAAGGGCAATGA

Upstream 100 bases:

>100_bases
GTCGTGTACCCGTAAGTCGGATCATCTAACCAGCCTATACCTGCCGGCATGCGCATACATGCCGGCACCTCCAGCCGTGC
CCCTCCAGTAGTCGTTCATC

Downstream 100 bases:

>100_bases
CGATGCGCACTCGGAAGCCGCGCGCCTCGCGCGCTCTGGCTGCGCGTTGGATCCTGGCCACCGCTCTGCCCACCGCGGTA
TTTGCTAATGAACCCGGCAA

Product: periplasmic chaperone

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 256; Mature: 256

Protein sequence:

>256_residues
MFKTSICRAAIAAVLLAMTAPGTLASVVLTGTRVIYPESEREVSLKLTNEGDAPSLVQAWIDDGDPNATPENAKSLFVLT
PPLFRLDAKKGQTLRIIQLQQALSRDQESLFWLNVLEVPPIASSSKDPQNSLQFAFRSRIKLFFRPTGLPGDADSAPTKV
TWRFVRKDDGHHVLTATNPTPYHITYTKVEATSGGHVYSNDAGAMVNPGGTVEFAIDDASPVSGEPAQVSYTFISDYGAG
VSGVHNAKPTQEAKGQ

Sequences:

>Translated_256_residues
MFKTSICRAAIAAVLLAMTAPGTLASVVLTGTRVIYPESEREVSLKLTNEGDAPSLVQAWIDDGDPNATPENAKSLFVLT
PPLFRLDAKKGQTLRIIQLQQALSRDQESLFWLNVLEVPPIASSSKDPQNSLQFAFRSRIKLFFRPTGLPGDADSAPTKV
TWRFVRKDDGHHVLTATNPTPYHITYTKVEATSGGHVYSNDAGAMVNPGGTVEFAIDDASPVSGEPAQVSYTFISDYGAG
VSGVHNAKPTQEAKGQ
>Mature_256_residues
MFKTSICRAAIAAVLLAMTAPGTLASVVLTGTRVIYPESEREVSLKLTNEGDAPSLVQAWIDDGDPNATPENAKSLFVLT
PPLFRLDAKKGQTLRIIQLQQALSRDQESLFWLNVLEVPPIASSSKDPQNSLQFAFRSRIKLFFRPTGLPGDADSAPTKV
TWRFVRKDDGHHVLTATNPTPYHITYTKVEATSGGHVYSNDAGAMVNPGGTVEFAIDDASPVSGEPAQVSYTFISDYGAG
VSGVHNAKPTQEAKGQ

Specific function: Required for the biogenesis of the filamentous hemagglutinin and the fimbria [H]

COG id: COG3121

COG function: function code NU; P pilus assembly protein, chaperone PapD

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Ig-like (immunoglobulin-like) domain [H]

Homologues:

Organism=Escherichia coli, GI1786333, Length=250, Percent_Identity=37.6, Blast_Score=169, Evalue=1e-43,
Organism=Escherichia coli, GI1788428, Length=237, Percent_Identity=32.9113924050633, Blast_Score=129, Evalue=2e-31,
Organism=Escherichia coli, GI1790771, Length=242, Percent_Identity=37.1900826446281, Blast_Score=127, Evalue=6e-31,
Organism=Escherichia coli, GI1787171, Length=238, Percent_Identity=34.0336134453782, Blast_Score=122, Evalue=2e-29,
Organism=Escherichia coli, GI1789532, Length=248, Percent_Identity=33.0645161290323, Blast_Score=116, Evalue=1e-27,
Organism=Escherichia coli, GI87082203, Length=231, Percent_Identity=28.1385281385281, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1786743, Length=241, Percent_Identity=29.8755186721992, Blast_Score=98, Evalue=6e-22,
Organism=Escherichia coli, GI1788677, Length=212, Percent_Identity=30.188679245283, Blast_Score=92, Evalue=2e-20,
Organism=Escherichia coli, GI1786936, Length=229, Percent_Identity=31.4410480349345, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI87081806, Length=232, Percent_Identity=32.3275862068966, Blast_Score=81, Evalue=8e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008962
- InterPro:   IPR001829
- InterPro:   IPR016148
- InterPro:   IPR018046
- InterPro:   IPR016147 [H]

Pfam domain/function: PF02753 Pili_assembly_C; PF00345 Pili_assembly_N [H]

EC number: NA

Molecular weight: Translated: 27543; Mature: 27543

Theoretical pI: Translated: 6.36; Mature: 6.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFKTSICRAAIAAVLLAMTAPGTLASVVLTGTRVIYPESEREVSLKLTNEGDAPSLVQAW
CCCHHHHHHHHHHHHHHHCCCCHHEEEEEECCEEEECCCCCEEEEEEECCCCCHHHHHHH
IDDGDPNATPENAKSLFVLTPPLFRLDAKKGQTLRIIQLQQALSRDQESLFWLNVLEVPP
HCCCCCCCCCCCCCEEEEECCCCEEEECCCCCEEEEEEHHHHHCCCCCCEEEEEEEECCC
IASSSKDPQNSLQFAFRSRIKLFFRPTGLPGDADSAPTKVTWRFVRKDDGHHVLTATNPT
CCCCCCCHHHHHHHHHHHCEEEEEECCCCCCCCCCCCCEEEEEEEEECCCCEEEEECCCC
PYHITYTKVEATSGGHVYSNDAGAMVNPGGTVEFAIDDASPVSGEPAQVSYTFISDYGAG
CEEEEEEEEEECCCCEEEECCCCCEECCCCEEEEEECCCCCCCCCCCEEEEEEEECCCCC
VSGVHNAKPTQEAKGQ
CCCCCCCCCCHHCCCC
>Mature Secondary Structure
MFKTSICRAAIAAVLLAMTAPGTLASVVLTGTRVIYPESEREVSLKLTNEGDAPSLVQAW
CCCHHHHHHHHHHHHHHHCCCCHHEEEEEECCEEEECCCCCEEEEEEECCCCCHHHHHHH
IDDGDPNATPENAKSLFVLTPPLFRLDAKKGQTLRIIQLQQALSRDQESLFWLNVLEVPP
HCCCCCCCCCCCCCEEEEECCCCEEEECCCCCEEEEEEHHHHHCCCCCCEEEEEEEECCC
IASSSKDPQNSLQFAFRSRIKLFFRPTGLPGDADSAPTKVTWRFVRKDDGHHVLTATNPT
CCCCCCCHHHHHHHHHHHCEEEEEECCCCCCCCCCCCCEEEEEEEEECCCCEEEEECCCC
PYHITYTKVEATSGGHVYSNDAGAMVNPGGTVEFAIDDASPVSGEPAQVSYTFISDYGAG
CEEEEEEEEEECCCCEEEECCCCCEECCCCEEEEEECCCCCCCCCCCEEEEEEEECCCCC
VSGVHNAKPTQEAKGQ
CCCCCCCCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1360139; 1354611; 12910271 [H]