Click here to switch to the map view.

The map label for this gene is ybeD [C]

Identifier: 94309169

GI number: 94309169

Start: 238439

End: 238747

Strand: Reverse

Name: ybeD [C]

Synonym: Rmet_0224

Alternate gene names: 94309169

Gene position: 238747-238439 (Counterclockwise)

Preceding gene: 94309170

Following gene: 94309168

Centisome position: 6.08

GC content: 60.84

Gene sequence:

>309_bases
ATGTCTACAGATTCGAACAACGGTCCGCTGATTCCGGGGGAGATTCCGCCGGAACAGTCGCTGATCGAGTACCCGAGCGA
TTTCCCGATCAAGGTCATGGGCGCGATGCAGGATGGCTTCGCCGAAGCGATCGTGACCCTGATCCAGGACTTCGACCCGA
ACTTCCACGCCGGCAAGATGGAGATGCGTCCGTCCCGCAACGGCAACTATCTGGGGCTGACGGTGACCGTGTGGGTCACG
AGCCGCGAGCAACTCGACGAGCTGTATCGCGCGCTGACCGGGCATCCGATGGTCAAGGTGGTGCTGTAA

Upstream 100 bases:

>100_bases
TGGTGGCGCTCGAGGAAGTGCCGGAGGCCGGCTTCTTCGGCCGCCTGTGGGATACGATCCGCCTCTGGTTCAAGCGCAAG
TAAGAGTTCAAGGATTCGAG

Downstream 100 bases:

>100_bases
CCGCATGAACGTCATCACCCTCAAGCCGGGCAAGGAAAAGTCCCTGCTCCGGCGCCATCCGTGGGTCTACGCCACGGGCA
TCGCCGCTACCGAAGGCCGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 102; Mature: 101

Protein sequence:

>102_residues
MSTDSNNGPLIPGEIPPEQSLIEYPSDFPIKVMGAMQDGFAEAIVTLIQDFDPNFHAGKMEMRPSRNGNYLGLTVTVWVT
SREQLDELYRALTGHPMVKVVL

Sequences:

>Translated_102_residues
MSTDSNNGPLIPGEIPPEQSLIEYPSDFPIKVMGAMQDGFAEAIVTLIQDFDPNFHAGKMEMRPSRNGNYLGLTVTVWVT
SREQLDELYRALTGHPMVKVVL
>Mature_101_residues
STDSNNGPLIPGEIPPEQSLIEYPSDFPIKVMGAMQDGFAEAIVTLIQDFDPNFHAGKMEMRPSRNGNYLGLTVTVWVTS
REQLDELYRALTGHPMVKVVL

Specific function: Unknown

COG id: COG2921

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0250 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007454 [H]

Pfam domain/function: PF04359 DUF493 [H]

EC number: NA

Molecular weight: Translated: 11336; Mature: 11205

Theoretical pI: Translated: 4.38; Mature: 4.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.9 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.0 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTDSNNGPLIPGEIPPEQSLIEYPSDFPIKVMGAMQDGFAEAIVTLIQDFDPNFHAGKM
CCCCCCCCCCCCCCCCCCCHHHCCCCCCCEEEECCHHCCHHHHHHHHHHHCCCCCCCCEE
EMRPSRNGNYLGLTVTVWVTSREQLDELYRALTGHPMVKVVL
EECCCCCCCEEEEEEEEEECCHHHHHHHHHHHCCCCEEEEEC
>Mature Secondary Structure 
STDSNNGPLIPGEIPPEQSLIEYPSDFPIKVMGAMQDGFAEAIVTLIQDFDPNFHAGKM
CCCCCCCCCCCCCCCCCCHHHCCCCCCCEEEECCHHCCHHHHHHHHHHHCCCCCCCCEE
EMRPSRNGNYLGLTVTVWVTSREQLDELYRALTGHPMVKVVL
EECCCCCCCEEEEEEEEEECCHHHHHHHHHHHCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11823852 [H]