| Definition | Cupriavidus metallidurans CH34 chromosome, complete genome. |
|---|---|
| Accession | NC_007973 |
| Length | 3,928,089 |
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The map label for this gene is fadD [C]
Identifier: 94309159
GI number: 94309159
Start: 226793
End: 228757
Strand: Direct
Name: fadD [C]
Synonym: Rmet_0214
Alternate gene names: 94309159
Gene position: 226793-228757 (Clockwise)
Preceding gene: 94309157
Following gene: 94309160
Centisome position: 5.77
GC content: 64.73
Gene sequence:
>1965_bases ATGCAGGAATCGTCGGCAACGACCTTCCCGCGATGCCTGCTGGCGCACGCCACGCAGCGGCCCGATCATCCGGCCTATCG CGAGAAGGATCTCGGTATCTGGCAGACATATGGCTGGTCGCAGACCGCGAACGAGGTTAGGGCCCTTGCCTGTGGGCTCG CGGCGCTGGGCTTCCGGCGCGGCATGAACCTGGCCGTGGTCGGTGACAACCGTCCGCGTCTTTACTGGGCCATGACCGCC GCCCAGGCGCTGGGCGGCATTCCGGTGCCGCTGTACCAGGACGCGATCGCCAACGAGATGATCTACGTGCTCGACGATGC GGAGATCGAGTTCGCGATCGTCGAGGACCAGGAACAGGTCGACAAGCTGCTCGAAGTGGAATCGCAGCTCGCCGCGCGTG GCCGCGCGGTACGCCACCTGATCTACGAAGACCCACGCGGATTGCGCGACTACGATCATCCGTCGCTGCTTTCGTACGAA CGCGTGCAGGAGATCGGCCGCGAGTTCGACCGCGCGAACCCCGGATTCTTTGACGCGGCAGTGCAGGCCGGCGCGCCGGA AGACACGGCCATCATCCTCTATACATCCGGCACCACTGGCAAACCGAAGGGCGTGTGCCACTCGCATGCGGGCCTGATTG GCTCGGCCCGTAACGGCTGCAAGTTCGATGGCCTTGGTGCCGATGACGACGTGCTGTCGTACCTGCCGATGGCCTGGGTA GGCGACAACCTGTTCTCGTACGCGCAGGCGCTGGTGGCAGGCTTCACCGTGAACTGCCCGGAGTCCCGCGAGACCGTGAT GACAGATCTGCGCGAGATCGGCCCGACCTACTACTTCGCGCCGCCGCGCATCTATGAAGGATTGTTGACGCAAGTCATGA TTCGCATGGAGGACGCGGGCTGGATCAAGCGCCGCCTCTTTCAATGGGCGATGAACGTGGCGCGCCGTTGCGGCGCGGAC ATCCTCGACAAGCGGCCGGTAGCGACGCTGGATCGGCTGCGCTATGCGCTGGGTGAAGCGCTAATCTACGGCCCGCTGCG CAACGTGCTTGGCATGAGCCGCATCCGCGTGGGCTACACGGCGGGCGAGGCGATCGGCCCGGACCTGTTCCGCTTCTATC GCTCGATCGGCATTAACCTGAAGCAGTTCTACGGCCAGACCGAAACCTGCGCTTACGTCTGCCTGCAGCCGGACGGCCAG GTCAAGTTCGATACGGTGGGACCGGCCGCCCCAGGCATGGAAATCCGCATCGCCGAAAACGGCGAAGTGCTGGTGCGCGG CGTGGGGCTGCTCAAGAACTACTACAAGCGCGACGACGCCACACGCGAGGCGATCAACGACGAAGGCTACTTCCTGACCG GCGACGCCGGCGTGATCGATGCCGACGGGCACCTCAAGATCATCGACCGGGCCAAGGACGTGGGCAAGCTGGCCGATGGC TCGATGTTCGCGCCCAAGTACATCGAGAACAAGCTCAAGTTCTTCCCGTACATCAAGGAAGCGGTGGCCTTCGGTACCGA CCGCGACCGCGTCTGCGCGTTTATCAATATCGACTTCGACGCCGTGGGCAACTGGGCCGAGCGCCGCCATTTGCCCTATG CGGGCTACGTCGACCTGGCTGCCCAGCCCGACGTGATCGCGATGATCGCCGAATGCGTCGAGCAGGTGAACGCCGATCTG GCCGCCGATGCGATGCTGGCTGGGTCGCAGATCGCACGCTTCCTGATCCTGCATAAGGAACTCGATCCGGACGACGACGA ACTCACGCGCACGCGCAAGGTGCGGCGCGGCTTCATCGCGGAGAAGTACGGCGTGCTGGTCGAGGCGCTCTATGCGGGCA AGCCCGAGCAGTTCATCGAGACGCGCGTGAAGTTCGAGGATGGGCGCGAGGGCAGCGTGTCGGCCACGCTGAAGCTGGTG GATGTGAAGCGCTTCCCGCCCGTAGGCGGCGCGCGCGCGGCGTGA
Upstream 100 bases:
>100_bases GCATGTGACGTGCCCAGTATAACGACCGGTCTGGGGGCTTGATACCCGGCGTGGCCCGTAGGGAACCAACCCTGCGTCCG ATGGTGGAGAGGAGACAGCG
Downstream 100 bases:
>100_bases GCACGGAGGGTATGGCATGACGGTCACCCAGACAGCGTGGCAAGGCGGCATGGCCCGCGTGGACGCCACAGGCACGTTGG TGCCGCCGGGCGCGATTGCC
Product: long-chain-fatty-acid--CoA ligase
Products: NA
Alternate protein names: Long-chain acyl-CoA synthetase; LACS [H]
Number of amino acids: Translated: 654; Mature: 654
Protein sequence:
>654_residues MQESSATTFPRCLLAHATQRPDHPAYREKDLGIWQTYGWSQTANEVRALACGLAALGFRRGMNLAVVGDNRPRLYWAMTA AQALGGIPVPLYQDAIANEMIYVLDDAEIEFAIVEDQEQVDKLLEVESQLAARGRAVRHLIYEDPRGLRDYDHPSLLSYE RVQEIGREFDRANPGFFDAAVQAGAPEDTAIILYTSGTTGKPKGVCHSHAGLIGSARNGCKFDGLGADDDVLSYLPMAWV GDNLFSYAQALVAGFTVNCPESRETVMTDLREIGPTYYFAPPRIYEGLLTQVMIRMEDAGWIKRRLFQWAMNVARRCGAD ILDKRPVATLDRLRYALGEALIYGPLRNVLGMSRIRVGYTAGEAIGPDLFRFYRSIGINLKQFYGQTETCAYVCLQPDGQ VKFDTVGPAAPGMEIRIAENGEVLVRGVGLLKNYYKRDDATREAINDEGYFLTGDAGVIDADGHLKIIDRAKDVGKLADG SMFAPKYIENKLKFFPYIKEAVAFGTDRDRVCAFINIDFDAVGNWAERRHLPYAGYVDLAAQPDVIAMIAECVEQVNADL AADAMLAGSQIARFLILHKELDPDDDELTRTRKVRRGFIAEKYGVLVEALYAGKPEQFIETRVKFEDGREGSVSATLKLV DVKRFPPVGGARAA
Sequences:
>Translated_654_residues MQESSATTFPRCLLAHATQRPDHPAYREKDLGIWQTYGWSQTANEVRALACGLAALGFRRGMNLAVVGDNRPRLYWAMTA AQALGGIPVPLYQDAIANEMIYVLDDAEIEFAIVEDQEQVDKLLEVESQLAARGRAVRHLIYEDPRGLRDYDHPSLLSYE RVQEIGREFDRANPGFFDAAVQAGAPEDTAIILYTSGTTGKPKGVCHSHAGLIGSARNGCKFDGLGADDDVLSYLPMAWV GDNLFSYAQALVAGFTVNCPESRETVMTDLREIGPTYYFAPPRIYEGLLTQVMIRMEDAGWIKRRLFQWAMNVARRCGAD ILDKRPVATLDRLRYALGEALIYGPLRNVLGMSRIRVGYTAGEAIGPDLFRFYRSIGINLKQFYGQTETCAYVCLQPDGQ VKFDTVGPAAPGMEIRIAENGEVLVRGVGLLKNYYKRDDATREAINDEGYFLTGDAGVIDADGHLKIIDRAKDVGKLADG SMFAPKYIENKLKFFPYIKEAVAFGTDRDRVCAFINIDFDAVGNWAERRHLPYAGYVDLAAQPDVIAMIAECVEQVNADL AADAMLAGSQIARFLILHKELDPDDDELTRTRKVRRGFIAEKYGVLVEALYAGKPEQFIETRVKFEDGREGSVSATLKLV DVKRFPPVGGARAA >Mature_654_residues MQESSATTFPRCLLAHATQRPDHPAYREKDLGIWQTYGWSQTANEVRALACGLAALGFRRGMNLAVVGDNRPRLYWAMTA AQALGGIPVPLYQDAIANEMIYVLDDAEIEFAIVEDQEQVDKLLEVESQLAARGRAVRHLIYEDPRGLRDYDHPSLLSYE RVQEIGREFDRANPGFFDAAVQAGAPEDTAIILYTSGTTGKPKGVCHSHAGLIGSARNGCKFDGLGADDDVLSYLPMAWV GDNLFSYAQALVAGFTVNCPESRETVMTDLREIGPTYYFAPPRIYEGLLTQVMIRMEDAGWIKRRLFQWAMNVARRCGAD ILDKRPVATLDRLRYALGEALIYGPLRNVLGMSRIRVGYTAGEAIGPDLFRFYRSIGINLKQFYGQTETCAYVCLQPDGQ VKFDTVGPAAPGMEIRIAENGEVLVRGVGLLKNYYKRDDATREAINDEGYFLTGDAGVIDADGHLKIIDRAKDVGKLADG SMFAPKYIENKLKFFPYIKEAVAFGTDRDRVCAFINIDFDAVGNWAERRHLPYAGYVDLAAQPDVIAMIAECVEQVNADL AADAMLAGSQIARFLILHKELDPDDDELTRTRKVRRGFIAEKYGVLVEALYAGKPEQFIETRVKFEDGREGSVSATLKLV DVKRFPPVGGARAA
Specific function: Esterification, Concomitant With Transport, Of Exogenous Long-Chain Fatty Acids Into Metabolically Active CoA Thioesters For Subsequent Degradation Or Incorporation Into Phospholipids. [C]
COG id: COG1022
COG function: function code I; Long-chain acyl-CoA synthetases (AMP-forming)
Gene ontology:
Cell location: Partially Membrane-Associated [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ATP-dependent AMP-binding enzyme family [H]
Homologues:
Organism=Homo sapiens, GI27477105, Length=608, Percent_Identity=24.6710526315789, Blast_Score=188, Evalue=1e-47, Organism=Homo sapiens, GI83745141, Length=633, Percent_Identity=22.1169036334913, Blast_Score=164, Evalue=2e-40, Organism=Homo sapiens, GI4758332, Length=647, Percent_Identity=25.193199381762, Blast_Score=160, Evalue=5e-39, Organism=Homo sapiens, GI12669909, Length=647, Percent_Identity=25.193199381762, Blast_Score=160, Evalue=5e-39, Organism=Homo sapiens, GI40807491, Length=626, Percent_Identity=26.3578274760383, Blast_Score=159, Evalue=7e-39, Organism=Homo sapiens, GI57165412, Length=609, Percent_Identity=24.4663382594417, Blast_Score=136, Evalue=5e-32, Organism=Homo sapiens, GI57165410, Length=609, Percent_Identity=24.3021346469622, Blast_Score=135, Evalue=2e-31, Organism=Homo sapiens, GI42794756, Length=635, Percent_Identity=23.9370078740157, Blast_Score=134, Evalue=3e-31, Organism=Homo sapiens, GI42794760, Length=635, Percent_Identity=23.9370078740157, Blast_Score=133, Evalue=5e-31, Organism=Homo sapiens, GI42794758, Length=635, Percent_Identity=23.9370078740157, Blast_Score=133, Evalue=5e-31, Organism=Homo sapiens, GI42794754, Length=531, Percent_Identity=24.105461393597, Blast_Score=108, Evalue=2e-23, Organism=Homo sapiens, GI42794752, Length=531, Percent_Identity=24.105461393597, Blast_Score=108, Evalue=2e-23, Organism=Escherichia coli, GI1788107, Length=515, Percent_Identity=23.495145631068, Blast_Score=79, Evalue=8e-16, Organism=Escherichia coli, GI145693145, Length=345, Percent_Identity=24.9275362318841, Blast_Score=77, Evalue=4e-15, Organism=Caenorhabditis elegans, GI17564090, Length=634, Percent_Identity=24.1324921135647, Blast_Score=151, Evalue=1e-36, Organism=Caenorhabditis elegans, GI17510401, Length=611, Percent_Identity=24.2225859247136, Blast_Score=150, Evalue=1e-36, Organism=Caenorhabditis elegans, GI17541856, Length=560, Percent_Identity=24.2857142857143, Blast_Score=145, Evalue=8e-35, Organism=Caenorhabditis elegans, GI25147511, Length=644, Percent_Identity=22.6708074534161, Blast_Score=127, Evalue=1e-29, Organism=Caenorhabditis elegans, GI17556552, Length=563, Percent_Identity=21.3143872113677, Blast_Score=125, Evalue=7e-29, Organism=Caenorhabditis elegans, GI193204819, Length=552, Percent_Identity=23.3695652173913, Blast_Score=124, Evalue=2e-28, Organism=Caenorhabditis elegans, GI17553312, Length=649, Percent_Identity=25.4237288135593, Blast_Score=112, Evalue=8e-25, Organism=Caenorhabditis elegans, GI17558820, Length=314, Percent_Identity=25.4777070063694, Blast_Score=92, Evalue=1e-18, Organism=Caenorhabditis elegans, GI32563687, Length=319, Percent_Identity=25.0783699059561, Blast_Score=91, Evalue=2e-18, Organism=Caenorhabditis elegans, GI133901848, Length=209, Percent_Identity=24.8803827751196, Blast_Score=73, Evalue=6e-13, Organism=Caenorhabditis elegans, GI71994703, Length=218, Percent_Identity=31.651376146789, Blast_Score=69, Evalue=7e-12, Organism=Caenorhabditis elegans, GI71994694, Length=218, Percent_Identity=31.651376146789, Blast_Score=69, Evalue=7e-12, Organism=Caenorhabditis elegans, GI71994690, Length=218, Percent_Identity=31.651376146789, Blast_Score=69, Evalue=8e-12, Organism=Saccharomyces cerevisiae, GI6320852, Length=601, Percent_Identity=23.9600665557404, Blast_Score=121, Evalue=3e-28, Organism=Saccharomyces cerevisiae, GI6324893, Length=491, Percent_Identity=24.4399185336049, Blast_Score=119, Evalue=1e-27, Organism=Saccharomyces cerevisiae, GI6323903, Length=456, Percent_Identity=26.0964912280702, Blast_Score=108, Evalue=3e-24, Organism=Saccharomyces cerevisiae, GI6322182, Length=463, Percent_Identity=24.1900647948164, Blast_Score=105, Evalue=3e-23, Organism=Drosophila melanogaster, GI17933690, Length=625, Percent_Identity=23.84, Blast_Score=169, Evalue=5e-42, Organism=Drosophila melanogaster, GI19921316, Length=626, Percent_Identity=23.6421725239617, Blast_Score=150, Evalue=2e-36, Organism=Drosophila melanogaster, GI281366413, Length=538, Percent_Identity=24.5353159851301, Blast_Score=144, Evalue=2e-34, Organism=Drosophila melanogaster, GI24666501, Length=538, Percent_Identity=24.5353159851301, Blast_Score=144, Evalue=2e-34, Organism=Drosophila melanogaster, GI24666497, Length=538, Percent_Identity=24.5353159851301, Blast_Score=144, Evalue=2e-34, Organism=Drosophila melanogaster, GI62471679, Length=458, Percent_Identity=24.235807860262, Blast_Score=105, Evalue=7e-23, Organism=Drosophila melanogaster, GI62471683, Length=458, Percent_Identity=24.235807860262, Blast_Score=105, Evalue=7e-23, Organism=Drosophila melanogaster, GI62471685, Length=458, Percent_Identity=24.235807860262, Blast_Score=105, Evalue=7e-23, Organism=Drosophila melanogaster, GI24586636, Length=458, Percent_Identity=24.235807860262, Blast_Score=105, Evalue=7e-23, Organism=Drosophila melanogaster, GI62471689, Length=458, Percent_Identity=24.235807860262, Blast_Score=105, Evalue=7e-23, Organism=Drosophila melanogaster, GI62471681, Length=458, Percent_Identity=24.235807860262, Blast_Score=105, Evalue=8e-23, Organism=Drosophila melanogaster, GI62471687, Length=458, Percent_Identity=24.235807860262, Blast_Score=105, Evalue=8e-23, Organism=Drosophila melanogaster, GI24586634, Length=458, Percent_Identity=24.235807860262, Blast_Score=105, Evalue=8e-23, Organism=Drosophila melanogaster, GI22026970, Length=458, Percent_Identity=24.235807860262, Blast_Score=105, Evalue=8e-23, Organism=Drosophila melanogaster, GI24581924, Length=511, Percent_Identity=21.7221135029354, Blast_Score=85, Evalue=2e-16, Organism=Drosophila melanogaster, GI281365686, Length=132, Percent_Identity=32.5757575757576, Blast_Score=67, Evalue=5e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020845 - InterPro: IPR000873 [H]
Pfam domain/function: PF00501 AMP-binding [H]
EC number: =6.2.1.3 [H]
Molecular weight: Translated: 72496; Mature: 72496
Theoretical pI: Translated: 5.13; Mature: 5.13
Prosite motif: PS00455 AMP_BINDING
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQESSATTFPRCLLAHATQRPDHPAYREKDLGIWQTYGWSQTANEVRALACGLAALGFRR CCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHC GMNLAVVGDNRPRLYWAMTAAQALGGIPVPLYQDAIANEMIYVLDDAEIEFAIVEDQEQV CCEEEEEECCCCEEEEEEEHHHHHCCCCCHHHHHHHHCCEEEEEECCCEEEEEECCHHHH DKLLEVESQLAARGRAVRHLIYEDPRGLRDYDHPSLLSYERVQEIGREFDRANPGFFDAA HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHH VQAGAPEDTAIILYTSGTTGKPKGVCHSHAGLIGSARNGCKFDGLGADDDVLSYLPMAWV HHCCCCCCCEEEEEECCCCCCCCCCHHHCCCCCCCCCCCCEECCCCCCHHHHHHCCHHHH GDNLFSYAQALVAGFTVNCPESRETVMTDLREIGPTYYFAPPRIYEGLLTQVMIRMEDAG CCHHHHHHHHHHHCCEECCCCHHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHHCCCH WIKRRLFQWAMNVARRCGADILDKRPVATLDRLRYALGEALIYGPLRNVLGMSRIRVGYT HHHHHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEC AGEAIGPDLFRFYRSIGINLKQFYGQTETCAYVCLQPDGQVKFDTVGPAAPGMEIRIAEN CCCCCCHHHHHHHHHHCCCHHHHCCCCCCEEEEEECCCCCEEEEECCCCCCCCEEEEECC GEVLVRGVGLLKNYYKRDDATREAINDEGYFLTGDAGVIDADGHLKIIDRAKDVGKLADG CCEEEEHHHHHHHHHHCCCHHHHHCCCCCEEEECCCCEEECCCCEEEEHHHHHHHHCCCC SMFAPKYIENKLKFFPYIKEAVAFGTDRDRVCAFINIDFDAVGNWAERRHLPYAGYVDLA CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECHHHHCCHHHHCCCCCCCCEECC AQPDVIAMIAECVEQVNADLAADAMLAGSQIARFLILHKELDPDDDELTRTRKVRRGFIA CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH EKYGVLVEALYAGKPEQFIETRVKFEDGREGSVSATLKLVDVKRFPPVGGARAA HHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCEEEEEEEEEECCCCCCCCCCC >Mature Secondary Structure MQESSATTFPRCLLAHATQRPDHPAYREKDLGIWQTYGWSQTANEVRALACGLAALGFRR CCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHC GMNLAVVGDNRPRLYWAMTAAQALGGIPVPLYQDAIANEMIYVLDDAEIEFAIVEDQEQV CCEEEEEECCCCEEEEEEEHHHHHCCCCCHHHHHHHHCCEEEEEECCCEEEEEECCHHHH DKLLEVESQLAARGRAVRHLIYEDPRGLRDYDHPSLLSYERVQEIGREFDRANPGFFDAA HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHH VQAGAPEDTAIILYTSGTTGKPKGVCHSHAGLIGSARNGCKFDGLGADDDVLSYLPMAWV HHCCCCCCCEEEEEECCCCCCCCCCHHHCCCCCCCCCCCCEECCCCCCHHHHHHCCHHHH GDNLFSYAQALVAGFTVNCPESRETVMTDLREIGPTYYFAPPRIYEGLLTQVMIRMEDAG CCHHHHHHHHHHHCCEECCCCHHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHHCCCH WIKRRLFQWAMNVARRCGADILDKRPVATLDRLRYALGEALIYGPLRNVLGMSRIRVGYT HHHHHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEC AGEAIGPDLFRFYRSIGINLKQFYGQTETCAYVCLQPDGQVKFDTVGPAAPGMEIRIAEN CCCCCCHHHHHHHHHHCCCHHHHCCCCCCEEEEEECCCCCEEEEECCCCCCCCEEEEECC GEVLVRGVGLLKNYYKRDDATREAINDEGYFLTGDAGVIDADGHLKIIDRAKDVGKLADG CCEEEEHHHHHHHHHHCCCHHHHHCCCCCEEEECCCCEEECCCCEEEEHHHHHHHHCCCC SMFAPKYIENKLKFFPYIKEAVAFGTDRDRVCAFINIDFDAVGNWAERRHLPYAGYVDLA CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECHHHHCCHHHHCCCCCCCCEECC AQPDVIAMIAECVEQVNADLAADAMLAGSQIARFLILHKELDPDDDELTRTRKVRRGFIA CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH EKYGVLVEALYAGKPEQFIETRVKFEDGREGSVSATLKLVDVKRFPPVGGARAA HHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCEEEEEEEEEECCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]