| Definition | Cupriavidus metallidurans CH34 chromosome, complete genome. |
|---|---|
| Accession | NC_007973 |
| Length | 3,928,089 |
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The map label for this gene is regB [H]
Identifier: 94309081
GI number: 94309081
Start: 141047
End: 142426
Strand: Reverse
Name: regB [H]
Synonym: Rmet_0136
Alternate gene names: 94309081
Gene position: 142426-141047 (Counterclockwise)
Preceding gene: 94309083
Following gene: 94309080
Centisome position: 3.63
GC content: 69.2
Gene sequence:
>1380_bases ATGCATCCCCCGATCGTCATGTCCACCCTACCGCCCTCCGTCGCCCCGCCCATCGGCACGGCGCCGCAGCGTCACAGCCT GGTGAGCCTGCGCCGCCTTAGCTGGCTGCGCTGGGCGCTGCTGGCGGGCCAGGCCTTGCTGCTGGTGTCATGCGAGTCGC TGGCCGGCATCGCCCTGCCCTACAAGCCGCTGCTGTTCCTGTTCGCCGTCCAGACCGTGTTCAACGTGTTCACCGTGGCG CGCCTGCACTGGCACACGCGCCACGGCACGGCGCCGTCCGACGCCGAGCTGATGGTGCAGATGATGGTCGACCTGACCGC GCTGTCGGCCATCTTGTTCTACACGGGCGGCGCGACCAATCCATTCGTGTCGTTCTACCTGCCCGGACTGGCGATTGCCT CGGCCATCCTGCCGTGGCGGCTGGTGGTGACGCTCGCGGCGTACGCGCTGGCCTGCTATTCGATGCTGCTGCTCGAGTAC ATACCGCTCGATCTGCACAACCCCGACAACGCGGTGAACTATCACCTGGCCGGGATGTGGCTCAACTTTGTGGCCAGTGC GGTGATGATCGCGTTCTTCGTGGCGCGGCTGTCCAACGCGCTGCGCCAGCGCGACGCGCAACTGAACGAGGCGCGCGAGC TGCTGCTGCGCGAGGCGCGCGTGGAGGCGCTCAATGACCAGGCCGCCGCCGTGGCGCACGAGATCGGCACCCCGCTGGCC ACGCTGGCCGTGATCGCCGGGGAACTGCGTGCCGACGCCGAGAACACGAATCGCAGCGACACACCGGTGGCCGACTACCA GGCCGACCTCCGCACGATGGAACAGCAGCTTGAACTCTGCCGTTCGATCCTGGCCCGGCTGCGCGCCGACCATGAAACAC TGGCACCGCAGCGAATCGATGCGTGGCTGGCGCCGTTCGTCGAACGCTGGCAACTGCGTCATCCACAGGCAAGCCTGCAG GCCGGTGCCGCGCCCGATGCGGCCGCGCAGGCCGTGGACACGGCACGCATCAGCCAGATCCTGACGATCGCGCTCGACAA TGCCGCGCGCAGCCAGCAGGCCGCCGGGCATGACCATCGCCAGGGGCCACCGCTGCGGCTGGACATCGCGCGCGAGGCCG ATGCGCTGGTGTACCGCGTCACTGATCACGGCCACGGCCTTCCGCCGGGGCTGCGCGCAAGGCTGGGCGAATCGCCGGTG GCCAGCGCCCATGGTGGCCAGGGCATCGGCCTGTACCTCGCGCAGAGCGCCGCGCGCCAGCTCGGCGGCCAGATCTCGTG GCATGACAATCCGGCGGGCGGCACGGTGCTCGAACTTCGCCTTCCGCTCACGGCCGCATCCGAACGCGCCATCGCCGCAC AACCCGACTTCCAACCGTGA
Upstream 100 bases:
>100_bases GATCTGAACCTCGCAGTCTGGCAGCGCCGCCCGCCGTTCAGAATGCGGCACTGTGTCGCACGTTGCAAGCGCCGATCCGC GGCATTGCTACACTCGCGCC
Downstream 100 bases:
>100_bases TGACCGACGTCACCGCCTCCAACGACGCCATGCCCTTCCTCGTCATCGATGACGACGAAGTTTTTTCCGGCACCCTGGCC CGCGCCCTCACGCGCCGCGG
Product: signal transduction histidine kinase
Products: NA
Alternate protein names: Protein prrB [H]
Number of amino acids: Translated: 459; Mature: 459
Protein sequence:
>459_residues MHPPIVMSTLPPSVAPPIGTAPQRHSLVSLRRLSWLRWALLAGQALLLVSCESLAGIALPYKPLLFLFAVQTVFNVFTVA RLHWHTRHGTAPSDAELMVQMMVDLTALSAILFYTGGATNPFVSFYLPGLAIASAILPWRLVVTLAAYALACYSMLLLEY IPLDLHNPDNAVNYHLAGMWLNFVASAVMIAFFVARLSNALRQRDAQLNEARELLLREARVEALNDQAAAVAHEIGTPLA TLAVIAGELRADAENTNRSDTPVADYQADLRTMEQQLELCRSILARLRADHETLAPQRIDAWLAPFVERWQLRHPQASLQ AGAAPDAAAQAVDTARISQILTIALDNAARSQQAAGHDHRQGPPLRLDIAREADALVYRVTDHGHGLPPGLRARLGESPV ASAHGGQGIGLYLAQSAARQLGGQISWHDNPAGGTVLELRLPLTAASERAIAAQPDFQP
Sequences:
>Translated_459_residues MHPPIVMSTLPPSVAPPIGTAPQRHSLVSLRRLSWLRWALLAGQALLLVSCESLAGIALPYKPLLFLFAVQTVFNVFTVA RLHWHTRHGTAPSDAELMVQMMVDLTALSAILFYTGGATNPFVSFYLPGLAIASAILPWRLVVTLAAYALACYSMLLLEY IPLDLHNPDNAVNYHLAGMWLNFVASAVMIAFFVARLSNALRQRDAQLNEARELLLREARVEALNDQAAAVAHEIGTPLA TLAVIAGELRADAENTNRSDTPVADYQADLRTMEQQLELCRSILARLRADHETLAPQRIDAWLAPFVERWQLRHPQASLQ AGAAPDAAAQAVDTARISQILTIALDNAARSQQAAGHDHRQGPPLRLDIAREADALVYRVTDHGHGLPPGLRARLGESPV ASAHGGQGIGLYLAQSAARQLGGQISWHDNPAGGTVLELRLPLTAASERAIAAQPDFQP >Mature_459_residues MHPPIVMSTLPPSVAPPIGTAPQRHSLVSLRRLSWLRWALLAGQALLLVSCESLAGIALPYKPLLFLFAVQTVFNVFTVA RLHWHTRHGTAPSDAELMVQMMVDLTALSAILFYTGGATNPFVSFYLPGLAIASAILPWRLVVTLAAYALACYSMLLLEY IPLDLHNPDNAVNYHLAGMWLNFVASAVMIAFFVARLSNALRQRDAQLNEARELLLREARVEALNDQAAAVAHEIGTPLA TLAVIAGELRADAENTNRSDTPVADYQADLRTMEQQLELCRSILARLRADHETLAPQRIDAWLAPFVERWQLRHPQASLQ AGAAPDAAAQAVDTARISQILTIALDNAARSQQAAGHDHRQGPPLRLDIAREADALVYRVTDHGHGLPPGLRARLGESPV ASAHGGQGIGLYLAQSAARQLGGQISWHDNPAGGTVLELRLPLTAASERAIAAQPDFQP
Specific function: Member of the two-component regulatory system RegB/RegA. Involved in the positive regulation of photosynthesis gene expression in response to anaerobiosis. Also involved in positive regulation of the cbbI and cbbII Calvin cycle CO2 fixation operons, as we
COG id: COG0642
COG function: function code T; Signal transduction histidine kinase
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 histidine kinase domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR004358 - InterPro: IPR003661 - InterPro: IPR005467 - InterPro: IPR009082 [H]
Pfam domain/function: PF02518 HATPase_c; PF00512 HisKA [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 49735; Mature: 49735
Theoretical pI: Translated: 6.84; Mature: 6.84
Prosite motif: PS50109 HIS_KIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHPPIVMSTLPPSVAPPIGTAPQRHSLVSLRRLSWLRWALLAGQALLLVSCESLAGIALP CCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHCCCCCC YKPLLFLFAVQTVFNVFTVARLHWHTRHGTAPSDAELMVQMMVDLTALSAILFYTGGATN HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC PFVSFYLPGLAIASAILPWRLVVTLAAYALACYSMLLLEYIPLDLHNPDNAVNYHLAGMW CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH LNFVASAVMIAFFVARLSNALRQRDAQLNEARELLLREARVEALNDQAAAVAHEIGTPLA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH TLAVIAGELRADAENTNRSDTPVADYQADLRTMEQQLELCRSILARLRADHETLAPQRID HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCHHHHH AWLAPFVERWQLRHPQASLQAGAAPDAAAQAVDTARISQILTIALDNAARSQQAAGHDHR HHHHHHHHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCC QGPPLRLDIAREADALVYRVTDHGHGLPPGLRARLGESPVASAHGGQGIGLYLAQSAARQ CCCCEEEEECCCCCEEEEEEECCCCCCCCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHH LGGQISWHDNPAGGTVLELRLPLTAASERAIAAQPDFQP HCCEEEECCCCCCCEEEEEEECCCCCCCCCEECCCCCCC >Mature Secondary Structure MHPPIVMSTLPPSVAPPIGTAPQRHSLVSLRRLSWLRWALLAGQALLLVSCESLAGIALP CCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHCCCCCC YKPLLFLFAVQTVFNVFTVARLHWHTRHGTAPSDAELMVQMMVDLTALSAILFYTGGATN HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC PFVSFYLPGLAIASAILPWRLVVTLAAYALACYSMLLLEYIPLDLHNPDNAVNYHLAGMW CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH LNFVASAVMIAFFVARLSNALRQRDAQLNEARELLLREARVEALNDQAAAVAHEIGTPLA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH TLAVIAGELRADAENTNRSDTPVADYQADLRTMEQQLELCRSILARLRADHETLAPQRID HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCHHHHH AWLAPFVERWQLRHPQASLQAGAAPDAAAQAVDTARISQILTIALDNAARSQQAAGHDHR HHHHHHHHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCC QGPPLRLDIAREADALVYRVTDHGHGLPPGLRARLGESPVASAHGGQGIGLYLAQSAARQ CCCCEEEEECCCCCEEEEEEECCCCCCCCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHH LGGQISWHDNPAGGTVLELRLPLTAASERAIAAQPDFQP HCCEEEECCCCCCCEEEEEEECCCCCCCCCEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7751278; 10358089 [H]