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The map label for this gene is ihfA [H]

Identifier: 93007121

GI number: 93007121

Start: 2824673

End: 2824972

Strand: Reverse

Name: ihfA [H]

Synonym: Pcryo_2297

Alternate gene names: 93007121

Gene position: 2824972-2824673 (Counterclockwise)

Preceding gene: 93007122

Following gene: 93007119

Centisome position: 92.32

GC content: 46.0

Gene sequence:

>300_bases
GTGAGCACCTTAACCAAATCTGACATGATTGAGCATTTGATGAATCATCTAAACCTAACGCGCCAAGAAGGTCGCTGTTT
GGTAGAGAATTTTTTTGACGAACTGTCAGAGAGTTTGATTGATGGCAAAGAGGTCAAGCTTTCAGGCTTTGGCAACTTTG
AGCTTAAAGACAAAAATAGTCGCCCAGGACGCAACCCTAAGACAGGGGAGCCCGTCGCGGTATCAGCGCGCCGCGTTGTG
ACCTTTAAAACAGGACAAAAATTCCGTCAACAGGTCGATGAGCGCCTATTTGACCAATAA

Upstream 100 bases:

>100_bases
TATTAAAAAGACGCACAAAAACCTTTATAATAGCTAACACTAATTCTCATACCGCTAAACCATGATATTCGACATCACGA
CATAGCATAGGAGTCGTACT

Downstream 100 bases:

>100_bases
TAGTAGTGAGTAAGATTAAAAGTGATGGTTCGCAGTTGTCTATTAAATCGACTGTTATAGCCATCATTTTTTTATGCGAC
ATTGTCTCAGTTATATAAAA

Product: integration host factor subunit alpha

Products: NA

Alternate protein names: IHF-alpha [H]

Number of amino acids: Translated: 99; Mature: 98

Protein sequence:

>99_residues
MSTLTKSDMIEHLMNHLNLTRQEGRCLVENFFDELSESLIDGKEVKLSGFGNFELKDKNSRPGRNPKTGEPVAVSARRVV
TFKTGQKFRQQVDERLFDQ

Sequences:

>Translated_99_residues
MSTLTKSDMIEHLMNHLNLTRQEGRCLVENFFDELSESLIDGKEVKLSGFGNFELKDKNSRPGRNPKTGEPVAVSARRVV
TFKTGQKFRQQVDERLFDQ
>Mature_98_residues
STLTKSDMIEHLMNHLNLTRQEGRCLVENFFDELSESLIDGKEVKLSGFGNFELKDKNSRPGRNPKTGEPVAVSARRVVT
FKTGQKFRQQVDERLFDQ

Specific function: This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control [H]

COG id: COG0776

COG function: function code L; Bacterial nucleoid DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial histone-like protein family [H]

Homologues:

Organism=Escherichia coli, GI1788005, Length=91, Percent_Identity=54.9450549450549, Blast_Score=112, Evalue=6e-27,
Organism=Escherichia coli, GI1786644, Length=90, Percent_Identity=28.8888888888889, Blast_Score=65, Evalue=7e-13,
Organism=Escherichia coli, GI1790433, Length=89, Percent_Identity=29.2134831460674, Blast_Score=61, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000119
- InterPro:   IPR020816
- InterPro:   IPR010992
- InterPro:   IPR005684 [H]

Pfam domain/function: PF00216 Bac_DNA_binding [H]

EC number: NA

Molecular weight: Translated: 11373; Mature: 11242

Theoretical pI: Translated: 8.52; Mature: 8.52

Prosite motif: PS00045 HISTONE_LIKE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTLTKSDMIEHLMNHLNLTRQEGRCLVENFFDELSESLIDGKEVKLSGFGNFELKDKNS
CCCCCHHHHHHHHHHHHCCCHHCCHHHHHHHHHHHHHHHCCCCEEEECCCCCEEECCCCC
RPGRNPKTGEPVAVSARRVVTFKTGQKFRQQVDERLFDQ
CCCCCCCCCCCEEECCEEEEEECCCHHHHHHHHHHHCCC
>Mature Secondary Structure 
STLTKSDMIEHLMNHLNLTRQEGRCLVENFFDELSESLIDGKEVKLSGFGNFELKDKNS
CCCCHHHHHHHHHHHHCCCHHCCHHHHHHHHHHHHHHHCCCCEEEECCCCCEEECCCCC
RPGRNPKTGEPVAVSARRVVTFKTGQKFRQQVDERLFDQ
CCCCCCCCCCCEEECCEEEEEECCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA