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The map label for this gene is rlpA [C]

Identifier: 93006312

GI number: 93006312

Start: 1829596

End: 1830216

Strand: Direct

Name: rlpA [C]

Synonym: Pcryo_1486

Alternate gene names: 93006312

Gene position: 1829596-1830216 (Clockwise)

Preceding gene: 93006311

Following gene: 93006329

Centisome position: 59.79

GC content: 43.96

Gene sequence:

>621_bases
ATGAATAAGCGTTTATCTGGTTTACTTACAATGTCAGCGGTACTATTTGCTGGCTCTGCAATCGCTTCTAATGCAAATGC
TGTAGAATCAAGAACCTCCCTTGCTATGATCTCGCAAGATAACGCCTCCCATATCGACCGCGTACTTGGTGAACTTAGTC
GTCAACATGATGGCGCATCAAGCTTAGTCAAGTCTGCACGCCAACCTGCTTCATTAGCGCTTAGCAGCTCACTGTTAGCC
AGTGATACCGCCCAAGTCAGTAATGATGAAGATGTGTTAGAGCGCTTAACAGCTGTTGCCTCTAACTCTGTCAGTAAATT
CAAGCAAACCGGTTTAGCTTCTTGGTATGGTCGCCAGTTTCATGGTCGCAAAACCGCCAGTGGTGAAACTTTTGATATGA
ATGGTTTAACGGCTGCACATCGCTCATTGCCATTAAACTGCTATGTTAGAGTGACTAACAAAACCAATGGTAAAAGCGTC
ATCGTTAAAGTAAATGATCGTGGTCCGTTCCATGGTAATCGTGTGATGGATTTATCTTATGGTGCTGCCAAAAAACTTGG
TATTACTGCTAAAGGTGTCGGCAACGTCGCTATTGAACGTGTTTCAGGACCTTCTTCTTAA

Upstream 100 bases:

>100_bases
TTTTGGAGTTTGCGGTATTGTTAGATTGGTCTAACACTATCTCGCTCAATCTAAGATGTTTTTAGAGTTAGGTTCTAAGG
TATAAGTCATAGAGGTATTT

Downstream 100 bases:

>100_bases
ACCATTAACGTTTTAGACCATTCGCGGTTTAAGCCTTTAACGGTTTTGTACAAATATTTTTAGATTTAACTAAAAGCGCC
TAACTAATTGATAGTTAGGC

Product: rare lipoprotein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 206; Mature: 206

Protein sequence:

>206_residues
MNKRLSGLLTMSAVLFAGSAIASNANAVESRTSLAMISQDNASHIDRVLGELSRQHDGASSLVKSARQPASLALSSSLLA
SDTAQVSNDEDVLERLTAVASNSVSKFKQTGLASWYGRQFHGRKTASGETFDMNGLTAAHRSLPLNCYVRVTNKTNGKSV
IVKVNDRGPFHGNRVMDLSYGAAKKLGITAKGVGNVAIERVSGPSS

Sequences:

>Translated_206_residues
MNKRLSGLLTMSAVLFAGSAIASNANAVESRTSLAMISQDNASHIDRVLGELSRQHDGASSLVKSARQPASLALSSSLLA
SDTAQVSNDEDVLERLTAVASNSVSKFKQTGLASWYGRQFHGRKTASGETFDMNGLTAAHRSLPLNCYVRVTNKTNGKSV
IVKVNDRGPFHGNRVMDLSYGAAKKLGITAKGVGNVAIERVSGPSS
>Mature_206_residues
MNKRLSGLLTMSAVLFAGSAIASNANAVESRTSLAMISQDNASHIDRVLGELSRQHDGASSLVKSARQPASLALSSSLLA
SDTAQVSNDEDVLERLTAVASNSVSKFKQTGLASWYGRQFHGRKTASGETFDMNGLTAAHRSLPLNCYVRVTNKTNGKSV
IVKVNDRGPFHGNRVMDLSYGAAKKLGITAKGVGNVAIERVSGPSS

Specific function: Unknown

COG id: COG0797

COG function: function code M; Lipoproteins

Gene ontology:

Cell location: Attached To The Membrane By A Lipid Anchor [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rlpA family [H]

Homologues:

Organism=Escherichia coli, GI1786852, Length=82, Percent_Identity=48.780487804878, Blast_Score=90, Evalue=1e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014733
- InterPro:   IPR009009
- InterPro:   IPR012997
- InterPro:   IPR007730 [H]

Pfam domain/function: PF03330 DPBB_1; PF05036 SPOR [H]

EC number: NA

Molecular weight: Translated: 21707; Mature: 21707

Theoretical pI: Translated: 10.64; Mature: 10.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKRLSGLLTMSAVLFAGSAIASNANAVESRTSLAMISQDNASHIDRVLGELSRQHDGAS
CCCHHHHHHHHHHHHHHCHHHHCCCHHHHHHHHEEEEECCCHHHHHHHHHHHHHCCCCHH
SLVKSARQPASLALSSSLLASDTAQVSNDEDVLERLTAVASNSVSKFKQTGLASWYGRQF
HHHHHHCCCHHHHHHHHHHHCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
HGRKTASGETFDMNGLTAAHRSLPLNCYVRVTNKTNGKSVIVKVNDRGPFHGNRVMDLSY
CCCCCCCCCEEECCCCHHHHHCCCEEEEEEEECCCCCCEEEEEECCCCCCCCCEEEEECC
GAAKKLGITAKGVGNVAIERVSGPSS
CCCHHCCEEECCCCCEEEEECCCCCC
>Mature Secondary Structure
MNKRLSGLLTMSAVLFAGSAIASNANAVESRTSLAMISQDNASHIDRVLGELSRQHDGAS
CCCHHHHHHHHHHHHHHCHHHHCCCHHHHHHHHEEEEECCCHHHHHHHHHHHHHCCCCHH
SLVKSARQPASLALSSSLLASDTAQVSNDEDVLERLTAVASNSVSKFKQTGLASWYGRQF
HHHHHHCCCHHHHHHHHHHHCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
HGRKTASGETFDMNGLTAAHRSLPLNCYVRVTNKTNGKSVIVKVNDRGPFHGNRVMDLSY
CCCCCCCCCEEECCCCHHHHHCCCEEEEEEEECCCCCCEEEEEECCCCCCCCCEEEEECC
GAAKKLGITAKGVGNVAIERVSGPSS
CCCHHCCEEECCCCCEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10761919 [H]