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The map label for this gene is sohB [H]

Identifier: 93006012

GI number: 93006012

Start: 1433174

End: 1434154

Strand: Direct

Name: sohB [H]

Synonym: Pcryo_1184

Alternate gene names: 93006012

Gene position: 1433174-1434154 (Clockwise)

Preceding gene: 93006007

Following gene: 93006013

Centisome position: 46.84

GC content: 43.12

Gene sequence:

>981_bases
ATGCTTTTTAATCCCTCTAAAAACCCTGTTGAGCTAAGAGTTATCCATCTGAATAAAAACCAAGAGCAACGCCGTGAAGA
CCTGATGGAGGCGACTCAAGGTAAAGCTGCCCTCAAACAATTCAAAAAAACACTGGCTAAAAAAGCAAAACAAGCCCTAA
AAGCGAAAACCAAAAATAAGAAAAAAAATAGTGATAGCAAGCAACAAGTTTTTGTACTCGACTTTGATGGCGATATTAAA
GCCACTGCTGTTAAACACCTGCGTGAAGAGATTAGCACACTTATCAGCACGGCGAATAAAGGCGATGAAGTGGTGGTGCG
TCTAGAGTCTGGTGGCGGCGTAGTACACGGTTATGGTTTAGCCGCCGCACAATTGGCTCGTCTAAAAGATGCCGGTTTGA
AACTCACCGTCTGCGTCGATAAGGTCGCAGCCAGTGGTGGCTATATGATGGCCTGCGTAGCGGACAATATTGTAGCTGCA
CCATTTGCAATTATTGGCTCTATCGGTGTGGTATCACAACTGCCCAATTTTCATAAATGGCTCAAAAACCATGATGTCGA
TTATGAGATGTTTACGGCTGGTGATTACAAACGTACCGTGACTGTATTTGGTGAAAATGATGATGAAGATCGTGCCAAAT
ATCAAGAAGAGCTAGAGCAAACACATGAGTTGTTTAAGCACTTTGTCAATCGTTACCGCGGTATGCTTGATGTAGATAAA
GTCGCAACAGGCGAACATTGGTATGGTGAAGATGCGCTGCATTTGAACTTGGTAGATAAATTACAGACATCAGACAGCTA
TCTGTTAGAGCGTATGGAAAACAACGAAGTATATGCGCTGCATTCACGTCAAAAGCCAACACTGGCAGAAAAACTAGGGC
TATCACAAGCTGCAGAGGCGACCATCAGTATGGCGGTTGATAAGCTGCCAGATGCACTAGCACGATTTGACCTTAATAGT
CGTTTAAATATCTTAAAGTAG

Upstream 100 bases:

>100_bases
ATATTGTTCCTCTGCTTGAAAAGATAAGCGCGCGTGCGCATATCAGCCTAACTTATAAAATTACACTAAGACCGTCTTAA
TCATTTAAGGAATCGTACTC

Downstream 100 bases:

>100_bases
TTTTAAGTATTAAGAGACTAGTGCATAGCTGATCTTTAAAGTTCTAACCTGAATTCGTGCATTGTTTGTATTTTGTAAAA
GGCGTGTCCTAACGGGTCGC

Product: putative periplasmic protease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 326; Mature: 326

Protein sequence:

>326_residues
MLFNPSKNPVELRVIHLNKNQEQRREDLMEATQGKAALKQFKKTLAKKAKQALKAKTKNKKKNSDSKQQVFVLDFDGDIK
ATAVKHLREEISTLISTANKGDEVVVRLESGGGVVHGYGLAAAQLARLKDAGLKLTVCVDKVAASGGYMMACVADNIVAA
PFAIIGSIGVVSQLPNFHKWLKNHDVDYEMFTAGDYKRTVTVFGENDDEDRAKYQEELEQTHELFKHFVNRYRGMLDVDK
VATGEHWYGEDALHLNLVDKLQTSDSYLLERMENNEVYALHSRQKPTLAEKLGLSQAAEATISMAVDKLPDALARFDLNS
RLNILK

Sequences:

>Translated_326_residues
MLFNPSKNPVELRVIHLNKNQEQRREDLMEATQGKAALKQFKKTLAKKAKQALKAKTKNKKKNSDSKQQVFVLDFDGDIK
ATAVKHLREEISTLISTANKGDEVVVRLESGGGVVHGYGLAAAQLARLKDAGLKLTVCVDKVAASGGYMMACVADNIVAA
PFAIIGSIGVVSQLPNFHKWLKNHDVDYEMFTAGDYKRTVTVFGENDDEDRAKYQEELEQTHELFKHFVNRYRGMLDVDK
VATGEHWYGEDALHLNLVDKLQTSDSYLLERMENNEVYALHSRQKPTLAEKLGLSQAAEATISMAVDKLPDALARFDLNS
RLNILK
>Mature_326_residues
MLFNPSKNPVELRVIHLNKNQEQRREDLMEATQGKAALKQFKKTLAKKAKQALKAKTKNKKKNSDSKQQVFVLDFDGDIK
ATAVKHLREEISTLISTANKGDEVVVRLESGGGVVHGYGLAAAQLARLKDAGLKLTVCVDKVAASGGYMMACVADNIVAA
PFAIIGSIGVVSQLPNFHKWLKNHDVDYEMFTAGDYKRTVTVFGENDDEDRAKYQEELEQTHELFKHFVNRYRGMLDVDK
VATGEHWYGEDALHLNLVDKLQTSDSYLLERMENNEVYALHSRQKPTLAEKLGLSQAAEATISMAVDKLPDALARFDLNS
RLNILK

Specific function: Possible protease [H]

COG id: COG0616

COG function: function code OU; Periplasmic serine proteases (ClpP class)

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase S49 family [H]

Homologues:

Organism=Escherichia coli, GI1787527, Length=293, Percent_Identity=51.877133105802, Blast_Score=283, Evalue=1e-77,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002142
- InterPro:   IPR013703 [H]

Pfam domain/function: PF01343 Peptidase_S49; PF08496 Peptidase_S49_N [H]

EC number: 3.4.21.-

Molecular weight: Translated: 36432; Mature: 36432

Theoretical pI: Translated: 8.59; Mature: 8.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLFNPSKNPVELRVIHLNKNQEQRREDLMEATQGKAALKQFKKTLAKKAKQALKAKTKNK
CCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCC
KKNSDSKQQVFVLDFDGDIKATAVKHLREEISTLISTANKGDEVVVRLESGGGVVHGYGL
CCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCEEEECHH
AAAQLARLKDAGLKLTVCVDKVAASGGYMMACVADNIVAAPFAIIGSIGVVSQLPNFHKW
HHHHHHHHHHCCCEEEEEEHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCHHHHH
LKNHDVDYEMFTAGDYKRTVTVFGENDDEDRAKYQEELEQTHELFKHFVNRYRGMLDVDK
HHCCCCCEEEEECCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
VATGEHWYGEDALHLNLVDKLQTSDSYLLERMENNEVYALHSRQKPTLAEKLGLSQAAEA
HCCCCCCCCCCCEEEEHHHHHHCCHHHHHHHHCCCCEEEEECCCCCHHHHHHCCHHHHHH
TISMAVDKLPDALARFDLNSRLNILK
HHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MLFNPSKNPVELRVIHLNKNQEQRREDLMEATQGKAALKQFKKTLAKKAKQALKAKTKNK
CCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCC
KKNSDSKQQVFVLDFDGDIKATAVKHLREEISTLISTANKGDEVVVRLESGGGVVHGYGL
CCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCEEEECHH
AAAQLARLKDAGLKLTVCVDKVAASGGYMMACVADNIVAAPFAIIGSIGVVSQLPNFHKW
HHHHHHHHHHCCCEEEEEEHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCHHHHH
LKNHDVDYEMFTAGDYKRTVTVFGENDDEDRAKYQEELEQTHELFKHFVNRYRGMLDVDK
HHCCCCCEEEEECCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
VATGEHWYGEDALHLNLVDKLQTSDSYLLERMENNEVYALHSRQKPTLAEKLGLSQAAEA
HCCCCCCCCCCCEEEEHHHHHHCCHHHHHHHHCCCCEEEEECCCCCHHHHHHCCHHHHHH
TISMAVDKLPDALARFDLNSRLNILK
HHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Hydrolase; Acting on peptide bonds (Peptidases) [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]