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The map label for this gene is ybgI [C]

Identifier: 93005942

GI number: 93005942

Start: 1343703

End: 1344521

Strand: Reverse

Name: ybgI [C]

Synonym: Pcryo_1114

Alternate gene names: 93005942

Gene position: 1344521-1343703 (Counterclockwise)

Preceding gene: 93005944

Following gene: 93005941

Centisome position: 43.94

GC content: 44.44

Gene sequence:

>819_bases
ATGAGTACGCACGATGTCTTAATCACATCATCAAATACTATCATTACTGCACACTCCTTAACTGAATTTTGCGATGATTA
CTTATCAGCGAATGCCTTTAAAGATTATGCACCGAATGGTCTACAAGTAGATGGCGGTCGGCCTATTAAGCGTATTGTCA
CTGGTGTGACTGCCTGTGAAGCATTGATTGATGCCGCCATTGCAGATAATGCTGATGCAATCATGGTACATCACGGCTAT
TTTTGGAAAGGTGAACCTGCTCCATTGACTGGTATGAAAGGTCAGCGTATTCGCAAGCTTATGCAACATGGTATCTCCTT
GATCGGCTATCACCTACCACTCGATGCCCATCCCATCATTGGTAACAATGCCACATTGGCGGCGGCGTTAGACATGACCA
TCATCGAGGCACTGTATCCTGCTGAGACTCATCCGGTTGGTAATATTGCCATTTGCACCGTACAGAGTGCTCAAAGCCTT
ATCGCTCAAATTACTCAAGCATTGGGGCGCATGCCATTACATATTGCCGCTGAGTATAACGTCGATACTCATACCAGTAA
TAGGTTAATTGAACGGATTGGTATCTGTACGGGCGGCGCACAAGATATGATTGAGCAAGCATCATTAATGGGCTGTGATG
CGTTTATTTCTGGTGAAATATCAGAACGTACGACTCATATTGCCCGTGAGCTTGGCATTGATTATTTTGCTTGCGGACAT
CATGCAACAGAACGCGGCGGCATTGAAGCTTTAGGTAGGATTGTTGCTCAACAGTTTGACTTACCAGTGACATTTATCGA
TATCGATAATCCTGCTTAA

Upstream 100 bases:

>100_bases
TGCCACATCATGTTAAAATGGTGATTACGAGAAATAATTCATTATTTATAAATACTTGAGCTACTGCAATTATTAATTGA
AACATTGATAAGGGAATACT

Downstream 100 bases:

>100_bases
GCAGCAGAAACTTATTTTTCTCCTAAAAAAGACAGGTAAGCAGATTTTTGCTTACCTGCCTTTTTTATTTTGGCCAGTAA
CAGAACGAACTTATATTCAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 272; Mature: 271

Protein sequence:

>272_residues
MSTHDVLITSSNTIITAHSLTEFCDDYLSANAFKDYAPNGLQVDGGRPIKRIVTGVTACEALIDAAIADNADAIMVHHGY
FWKGEPAPLTGMKGQRIRKLMQHGISLIGYHLPLDAHPIIGNNATLAAALDMTIIEALYPAETHPVGNIAICTVQSAQSL
IAQITQALGRMPLHIAAEYNVDTHTSNRLIERIGICTGGAQDMIEQASLMGCDAFISGEISERTTHIARELGIDYFACGH
HATERGGIEALGRIVAQQFDLPVTFIDIDNPA

Sequences:

>Translated_272_residues
MSTHDVLITSSNTIITAHSLTEFCDDYLSANAFKDYAPNGLQVDGGRPIKRIVTGVTACEALIDAAIADNADAIMVHHGY
FWKGEPAPLTGMKGQRIRKLMQHGISLIGYHLPLDAHPIIGNNATLAAALDMTIIEALYPAETHPVGNIAICTVQSAQSL
IAQITQALGRMPLHIAAEYNVDTHTSNRLIERIGICTGGAQDMIEQASLMGCDAFISGEISERTTHIARELGIDYFACGH
HATERGGIEALGRIVAQQFDLPVTFIDIDNPA
>Mature_271_residues
STHDVLITSSNTIITAHSLTEFCDDYLSANAFKDYAPNGLQVDGGRPIKRIVTGVTACEALIDAAIADNADAIMVHHGYF
WKGEPAPLTGMKGQRIRKLMQHGISLIGYHLPLDAHPIIGNNATLAAALDMTIIEALYPAETHPVGNIAICTVQSAQSLI
AQITQALGRMPLHIAAEYNVDTHTSNRLIERIGICTGGAQDMIEQASLMGCDAFISGEISERTTHIARELGIDYFACGHH
ATERGGIEALGRIVAQQFDLPVTFIDIDNPA

Specific function: Unknown

COG id: COG0327

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0135 (NIF3) family [H]

Homologues:

Organism=Escherichia coli, GI1786928, Length=254, Percent_Identity=47.244094488189, Blast_Score=236, Evalue=1e-63,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002678 [H]

Pfam domain/function: PF01784 NIF3 [H]

EC number: NA

Molecular weight: Translated: 29226; Mature: 29094

Theoretical pI: Translated: 5.23; Mature: 5.23

Prosite motif: PS00639 THIOL_PROTEASE_HIS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTHDVLITSSNTIITAHSLTEFCDDYLSANAFKDYAPNGLQVDGGRPIKRIVTGVTACE
CCCCCEEEECCCEEEEHHHHHHHHHHHHCCCCHHHCCCCCEEECCCCCHHHHHHHHHHHH
ALIDAAIADNADAIMVHHGYFWKGEPAPLTGMKGQRIRKLMQHGISLIGYHLPLDAHPII
HHHHHHHCCCCCEEEEECCEEECCCCCCCCCCCHHHHHHHHHCCHHHEEEECCCCCCCEE
GNNATLAAALDMTIIEALYPAETHPVGNIAICTVQSAQSLIAQITQALGRMPLHIAAEYN
CCCCEEHHHHHHHHHHHHCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHCCCCEEEEEECC
VDTHTSNRLIERIGICTGGAQDMIEQASLMGCDAFISGEISERTTHIARELGIDYFACGH
CCCCHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHCCCHHHHHHHHHHHHCCCEEECCC
HATERGGIEALGRIVAQQFDLPVTFIDIDNPA
CCCCCCCHHHHHHHHHHHHCCCEEEEECCCCC
>Mature Secondary Structure 
STHDVLITSSNTIITAHSLTEFCDDYLSANAFKDYAPNGLQVDGGRPIKRIVTGVTACE
CCCCEEEECCCEEEEHHHHHHHHHHHHCCCCHHHCCCCCEEECCCCCHHHHHHHHHHHH
ALIDAAIADNADAIMVHHGYFWKGEPAPLTGMKGQRIRKLMQHGISLIGYHLPLDAHPII
HHHHHHHCCCCCEEEEECCEEECCCCCCCCCCCHHHHHHHHHCCHHHEEEECCCCCCCEE
GNNATLAAALDMTIIEALYPAETHPVGNIAICTVQSAQSLIAQITQALGRMPLHIAAEYN
CCCCEEHHHHHHHHHHHHCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHCCCCEEEEEECC
VDTHTSNRLIERIGICTGGAQDMIEQASLMGCDAFISGEISERTTHIARELGIDYFACGH
CCCCHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHCCCHHHHHHHHHHHHCCCEEECCC
HATERGGIEALGRIVAQQFDLPVTFIDIDNPA
CCCCCCCHHHHHHHHHHHHCCCEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11586360; 12142430 [H]