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The map label for this gene is secF [H]

Identifier: 93005935

GI number: 93005935

Start: 1331757

End: 1333001

Strand: Reverse

Name: secF [H]

Synonym: Pcryo_1107

Alternate gene names: 93005935

Gene position: 1333001-1331757 (Counterclockwise)

Preceding gene: 93005936

Following gene: 93005934

Centisome position: 43.56

GC content: 45.14

Gene sequence:

>1245_bases
ATGGCAATCGATAATAACAATCCTCTAGAAAAACAGAACAATCCAGAACCCAACGGCTCAAATAGTGAAGCAAGTGGGCG
TGGGCGTAAAAAACCGCGCCGTGATGGCAAAGGTAGCAATACCCAAACCAATAACGCCACTGCTAAGAAATCAGCCAGTA
AAACTCAGCGTACTGGCAAAGGCGCTAATAAAGACAGTCAAGTATTCGCGACTACTGCTCTTGATCCTAGCTTAGCATTA
GGTGATGCCGCTGAAGATGCTGCTGCCTATGCCGAAGGGGGTATCAAAGCCGTCGGTGATCAGCGTATCATCCCTTTTAT
GAAGCTAGAAAAGCCAATGGGCATTTTATCAATCATTTTGGTGATTGGTAGTATCATTGCAATTGCGGTCAATGGCTTGA
ACCTTGGTCTTGATTTTACCGGTGGCGTGTCAGCAGATGTGCGCTATGAGCAATCCGTTGAGCAAGGTGATGTGGTTACT
GCGTTGGCAGATAATGGCTTTGATGATGCAGTCGTGCAGTACCTAGGCACCTCGCAAGAGCTGCTAATACGTTTGCCGCC
TCAATCTGATAACATTGATGGTCTTAACAACAGCTTGAGCGAAGCGTTAGCGCTACCTAATAACGATGTTGAAATCAGCA
ACGTGAATATTATCGGTAGTCAAGTTGGTAACGAGATCTATTTAAGCTCAGTCATGTCAATTGTGCTTGCACTAGCGTGT
ATGCTGGGATATGTCGCCCTGCGCTTTCAGTTCAAACTGGCACTTGGCGCGGTATTGTCCTTGTTCCATGATGCTATCGT
GACCATCGGTGTCTTTGCCTTATTTGGCTTCCCATTCGATTTAACAGTACTAGCAGCCATCTTGGCATTGATTGGTTATT
CATTGAACGATACCATCGTTGTCTATGACCGTATCCGTGAAAATTTCCGCCGTGTCCGCGGGATCAGTCCGCGTCAAACC
ATTGATTTGTCATTAACAGAGACACTACGCCGTACGATTATGACTATCTCAACCGTGCTATTAGTGGTATTAGCAATGCT
GTTCTTGGGCGGTGATGGCTTATTCTGGTTCTCAGCGGCACTGTTTATTGGTTTACTTGCTGGTACTTATTCCTCTACCT
ATATTGCAAGCTCGATTCCTCTAGCGATGGGTCTGTCACGTGATGACTTTATCGTCAAAGTAAAACCTGAGTTTGAAGAA
GAAATCGTGACTTTCAATGATCCAAAGATGTTTGAACAAGATTGA

Upstream 100 bases:

>100_bases
CTCGCTGTTTACGGCAATTTTAGTAACCCGTGCACTGATACAAATTGCTTATGGTAAGCGTAAATCTATCAAACGTCTGA
GCATCGGTTAGGAGAAAACT

Downstream 100 bases:

>100_bases
TAATGGCACCCCTGCTCACTTGGTAAATTCTCTATTAAGTGAGTAGATAAGCGTGATCATGAAAAAAGCACCTAGACTCT
AGGTGCTTTTGTTTATGTAT

Product: preprotein translocase subunit SecF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 414; Mature: 413

Protein sequence:

>414_residues
MAIDNNNPLEKQNNPEPNGSNSEASGRGRKKPRRDGKGSNTQTNNATAKKSASKTQRTGKGANKDSQVFATTALDPSLAL
GDAAEDAAAYAEGGIKAVGDQRIIPFMKLEKPMGILSIILVIGSIIAIAVNGLNLGLDFTGGVSADVRYEQSVEQGDVVT
ALADNGFDDAVVQYLGTSQELLIRLPPQSDNIDGLNNSLSEALALPNNDVEISNVNIIGSQVGNEIYLSSVMSIVLALAC
MLGYVALRFQFKLALGAVLSLFHDAIVTIGVFALFGFPFDLTVLAAILALIGYSLNDTIVVYDRIRENFRRVRGISPRQT
IDLSLTETLRRTIMTISTVLLVVLAMLFLGGDGLFWFSAALFIGLLAGTYSSTYIASSIPLAMGLSRDDFIVKVKPEFEE
EIVTFNDPKMFEQD

Sequences:

>Translated_414_residues
MAIDNNNPLEKQNNPEPNGSNSEASGRGRKKPRRDGKGSNTQTNNATAKKSASKTQRTGKGANKDSQVFATTALDPSLAL
GDAAEDAAAYAEGGIKAVGDQRIIPFMKLEKPMGILSIILVIGSIIAIAVNGLNLGLDFTGGVSADVRYEQSVEQGDVVT
ALADNGFDDAVVQYLGTSQELLIRLPPQSDNIDGLNNSLSEALALPNNDVEISNVNIIGSQVGNEIYLSSVMSIVLALAC
MLGYVALRFQFKLALGAVLSLFHDAIVTIGVFALFGFPFDLTVLAAILALIGYSLNDTIVVYDRIRENFRRVRGISPRQT
IDLSLTETLRRTIMTISTVLLVVLAMLFLGGDGLFWFSAALFIGLLAGTYSSTYIASSIPLAMGLSRDDFIVKVKPEFEE
EIVTFNDPKMFEQD
>Mature_413_residues
AIDNNNPLEKQNNPEPNGSNSEASGRGRKKPRRDGKGSNTQTNNATAKKSASKTQRTGKGANKDSQVFATTALDPSLALG
DAAEDAAAYAEGGIKAVGDQRIIPFMKLEKPMGILSIILVIGSIIAIAVNGLNLGLDFTGGVSADVRYEQSVEQGDVVTA
LADNGFDDAVVQYLGTSQELLIRLPPQSDNIDGLNNSLSEALALPNNDVEISNVNIIGSQVGNEIYLSSVMSIVLALACM
LGYVALRFQFKLALGAVLSLFHDAIVTIGVFALFGFPFDLTVLAAILALIGYSLNDTIVVYDRIRENFRRVRGISPRQTI
DLSLTETLRRTIMTISTVLLVVLAMLFLGGDGLFWFSAALFIGLLAGTYSSTYIASSIPLAMGLSRDDFIVKVKPEFEEE
IVTFNDPKMFEQD

Specific function: Involved in protein export [H]

COG id: COG0341

COG function: function code U; Preprotein translocase subunit SecF

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786610, Length=301, Percent_Identity=36.5448504983389, Blast_Score=210, Evalue=2e-55,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645
- InterPro:   IPR005665 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 44439; Mature: 44308

Theoretical pI: Translated: 4.54; Mature: 4.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAIDNNNPLEKQNNPEPNGSNSEASGRGRKKPRRDGKGSNTQTNNATAKKSASKTQRTGK
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC
GANKDSQVFATTALDPSLALGDAAEDAAAYAEGGIKAVGDQRIIPFMKLEKPMGILSIIL
CCCCCCCEEEEECCCCCHHCCCCHHHHHHHHCCCCEECCCCCCCCHHHHCCCHHHHHHHH
VIGSIIAIAVNGLNLGLDFTGGVSADVRYEQSVEQGDVVTALADNGFDDAVVQYLGTSQE
HHHHHHHHHHCCCEECEEECCCCCCCCHHHHCCCCCCEEEEECCCCCHHHHHHHHCCCCC
LLIRLPPQSDNIDGLNNSLSEALALPNNDVEISNVNIIGSQVGNEIYLSSVMSIVLALAC
EEEECCCCCCCCCCCHHHHHHHHCCCCCCEEEEEEEEEHHHHCCHHHHHHHHHHHHHHHH
MLGYVALRFQFKLALGAVLSLFHDAIVTIGVFALFGFPFDLTVLAAILALIGYSLNDTIV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCEEE
VYDRIRENFRRVRGISPRQTIDLSLTETLRRTIMTISTVLLVVLAMLFLGGDGLFWFSAA
EHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
LFIGLLAGTYSSTYIASSIPLAMGLSRDDFIVKVKPEFEEEIVTFNDPKMFEQD
HHHHHHHHCCCCHHHHHCCCHHCCCCCCCEEEEECCCCCCCCEECCCCCCCCCC
>Mature Secondary Structure 
AIDNNNPLEKQNNPEPNGSNSEASGRGRKKPRRDGKGSNTQTNNATAKKSASKTQRTGK
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC
GANKDSQVFATTALDPSLALGDAAEDAAAYAEGGIKAVGDQRIIPFMKLEKPMGILSIIL
CCCCCCCEEEEECCCCCHHCCCCHHHHHHHHCCCCEECCCCCCCCHHHHCCCHHHHHHHH
VIGSIIAIAVNGLNLGLDFTGGVSADVRYEQSVEQGDVVTALADNGFDDAVVQYLGTSQE
HHHHHHHHHHCCCEECEEECCCCCCCCHHHHCCCCCCEEEEECCCCCHHHHHHHHCCCCC
LLIRLPPQSDNIDGLNNSLSEALALPNNDVEISNVNIIGSQVGNEIYLSSVMSIVLALAC
EEEECCCCCCCCCCCHHHHHHHHCCCCCCEEEEEEEEEHHHHCCHHHHHHHHHHHHHHHH
MLGYVALRFQFKLALGAVLSLFHDAIVTIGVFALFGFPFDLTVLAAILALIGYSLNDTIV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCEEE
VYDRIRENFRRVRGISPRQTIDLSLTETLRRTIMTISTVLLVVLAMLFLGGDGLFWFSAA
EHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
LFIGLLAGTYSSTYIASSIPLAMGLSRDDFIVKVKPEFEEEIVTFNDPKMFEQD
HHHHHHHHCCCCHHHHHCCCHHCCCCCCCEEEEECCCCCCCCEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]