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The map label for this gene is dinF [H]

Identifier: 93005934

GI number: 93005934

Start: 1330131

End: 1331549

Strand: Reverse

Name: dinF [H]

Synonym: Pcryo_1106

Alternate gene names: 93005934

Gene position: 1331549-1330131 (Counterclockwise)

Preceding gene: 93005935

Following gene: 93005933

Centisome position: 43.52

GC content: 42.49

Gene sequence:

>1419_bases
ATGTCATCTATGCTACCGCCACGTCCTATGCCGTCTATTGATACTCGCTATGCACGTATTATCGCTATTGCATTGCCAGT
ATTATTGGCAAATCTTGCAATGCCACTCCAAAGCGTCATTGATACGGCGATTATTGGCAATATGAATGATACGGCAAAAC
TTGCTGGTATCGGGCTTGCAGTACAACTGCTATCACTATTGCTCGTCAGTTTTAACTTTTTGCAATATGCTTCATCTGGA
CTTTCGGCACAGGCGCTAGGACAGCTGGCTAATAAAAATACCGCTCATAACGATACTCTAAAGAATAATCCTAGTCAGCA
ATCACCGCTGTTGTCCATCTTGCAACGCGCTTTGGTTTTGGCATTTATGATTGGTGCCGTTTTACTACTGGTAAAACCTT
GGCTCATTGATTTTGGTCTACAAGCGCTTGCCGCCAATCCTGATAGCGGCGATGCAGCAAAGACCTATTTAAATGTGCGC
TTTTGGGGTGTGATTGCTGAGCTAATGAACTTTGCTTTTATTGGCTGGTTTGCAGGTCAAGGCAAGACCCGTTATATGCT
ATATCAACAAGGTTTTATCGCTATACTCAATATCATTCTGACACTATTTTTTGTTTTTGCAATGGATATGGGCTTGGTCG
GTGTTGCATTGGGTACAGCGATTGCGTTTTGGTTGGGCGTAGTATTGGCATTATGGTTAAGTCGTCTACATTTGAAAATC
TCTTGGCAGGCGTTATTTACTGCTGATCCGCAGCATTTTAATAAAGATAAGATGCTTAGGCTATTTTCATTAAATAAAGA
TATTTTTATTCGTACGCTTATTTTAACATTAAGCTTTGCTTGGATTACTCGACTCTCTGCTCAAAGCGGTGACGTCATAC
TCGCTGCCAATGCTATTTTATTACAAGTATTGAGCATCTCAGCCTTTGCCCTTGACGGGGTGGCAGTCTCTGCTGAGACG
TTAAGTGGACAAGCAGCAGGTCGACGAGATTGGTCACGCTTTCGCATTATCGTGAAACGTACCGGCATCGTCAGCTACGG
TCTTGCTATTCTGCTAAGTGCAATATGGTGGCTTGCCATGCCCACATATTTACAGTTTATGACCAATATCGAACCTGTTT
TTACGCTTGCTTATGACTATCATTTATATGCTGTCCTGTTACCACTTGTCGGGGTTGGTGCTTACTGGTTAGATGGGATA
TTTTTTGGTTTAACAGCAGGTAGCATTATTCGCAATGCAGCCCTTATATTAGCGGCTATCTTTTTCCCATTGAGTTGGTT
GCTTTATCAGCAGTGGGCTATGACGGGCATCTGGCTCAGCGTATGGTGTTTATTGTTGCTAAGAATGCTGATACTTGCTG
GATTTTTATACCATGCTCATCAAACTAGCAGCTATGAAAAACTCCAACTTGACCATTGA

Upstream 100 bases:

>100_bases
AAAATCAAATCAATACCTAAAAATTTTAGCGCTGCTATAAGTTATTATCCTTAGCACTACCTATGAGCATTCTTAATCTG
CCTATCTAAGCGATTGCCTT

Downstream 100 bases:

>100_bases
CCGATTGCCATTACACTATTAAGCTCCCTTTAAAATTTAATAATAAACAAGAATGGTAAAAACTAGGATGTGACGTGAAT
ACTCAATCAAATGAGATCAA

Product: MATE efflux family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 472; Mature: 471

Protein sequence:

>472_residues
MSSMLPPRPMPSIDTRYARIIAIALPVLLANLAMPLQSVIDTAIIGNMNDTAKLAGIGLAVQLLSLLLVSFNFLQYASSG
LSAQALGQLANKNTAHNDTLKNNPSQQSPLLSILQRALVLAFMIGAVLLLVKPWLIDFGLQALAANPDSGDAAKTYLNVR
FWGVIAELMNFAFIGWFAGQGKTRYMLYQQGFIAILNIILTLFFVFAMDMGLVGVALGTAIAFWLGVVLALWLSRLHLKI
SWQALFTADPQHFNKDKMLRLFSLNKDIFIRTLILTLSFAWITRLSAQSGDVILAANAILLQVLSISAFALDGVAVSAET
LSGQAAGRRDWSRFRIIVKRTGIVSYGLAILLSAIWWLAMPTYLQFMTNIEPVFTLAYDYHLYAVLLPLVGVGAYWLDGI
FFGLTAGSIIRNAALILAAIFFPLSWLLYQQWAMTGIWLSVWCLLLLRMLILAGFLYHAHQTSSYEKLQLDH

Sequences:

>Translated_472_residues
MSSMLPPRPMPSIDTRYARIIAIALPVLLANLAMPLQSVIDTAIIGNMNDTAKLAGIGLAVQLLSLLLVSFNFLQYASSG
LSAQALGQLANKNTAHNDTLKNNPSQQSPLLSILQRALVLAFMIGAVLLLVKPWLIDFGLQALAANPDSGDAAKTYLNVR
FWGVIAELMNFAFIGWFAGQGKTRYMLYQQGFIAILNIILTLFFVFAMDMGLVGVALGTAIAFWLGVVLALWLSRLHLKI
SWQALFTADPQHFNKDKMLRLFSLNKDIFIRTLILTLSFAWITRLSAQSGDVILAANAILLQVLSISAFALDGVAVSAET
LSGQAAGRRDWSRFRIIVKRTGIVSYGLAILLSAIWWLAMPTYLQFMTNIEPVFTLAYDYHLYAVLLPLVGVGAYWLDGI
FFGLTAGSIIRNAALILAAIFFPLSWLLYQQWAMTGIWLSVWCLLLLRMLILAGFLYHAHQTSSYEKLQLDH
>Mature_471_residues
SSMLPPRPMPSIDTRYARIIAIALPVLLANLAMPLQSVIDTAIIGNMNDTAKLAGIGLAVQLLSLLLVSFNFLQYASSGL
SAQALGQLANKNTAHNDTLKNNPSQQSPLLSILQRALVLAFMIGAVLLLVKPWLIDFGLQALAANPDSGDAAKTYLNVRF
WGVIAELMNFAFIGWFAGQGKTRYMLYQQGFIAILNIILTLFFVFAMDMGLVGVALGTAIAFWLGVVLALWLSRLHLKIS
WQALFTADPQHFNKDKMLRLFSLNKDIFIRTLILTLSFAWITRLSAQSGDVILAANAILLQVLSISAFALDGVAVSAETL
SGQAAGRRDWSRFRIIVKRTGIVSYGLAILLSAIWWLAMPTYLQFMTNIEPVFTLAYDYHLYAVLLPLVGVGAYWLDGIF
FGLTAGSIIRNAALILAAIFFPLSWLLYQQWAMTGIWLSVWCLLLLRMLILAGFLYHAHQTSSYEKLQLDH

Specific function: Unknown

COG id: COG0534

COG function: function code V; Na+-driven multidrug efflux pump

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family [H]

Homologues:

Organism=Escherichia coli, GI1790477, Length=438, Percent_Identity=33.1050228310502, Blast_Score=163, Evalue=2e-41,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002528 [H]

Pfam domain/function: PF01554 MatE [H]

EC number: NA

Molecular weight: Translated: 52151; Mature: 52019

Theoretical pI: Translated: 9.83; Mature: 9.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSMLPPRPMPSIDTRYARIIAIALPVLLANLAMPLQSVIDTAIIGNMNDTAKLAGIGLA
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
VQLLSLLLVSFNFLQYASSGLSAQALGQLANKNTAHNDTLKNNPSQQSPLLSILQRALVL
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
AFMIGAVLLLVKPWLIDFGLQALAANPDSGDAAKTYLNVRFWGVIAELMNFAFIGWFAGQ
HHHHHHHHHHHHHHHHHHCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
GKTRYMLYQQGFIAILNIILTLFFVFAMDMGLVGVALGTAIAFWLGVVLALWLSRLHLKI
CCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEE
SWQALFTADPQHFNKDKMLRLFSLNKDIFIRTLILTLSFAWITRLSAQSGDVILAANAIL
EEEEEEECCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHH
LQVLSISAFALDGVAVSAETLSGQAAGRRDWSRFRIIVKRTGIVSYGLAILLSAIWWLAM
HHHHHHHHHHHCCCEEEHHHHCCCCCCCCCHHHHEEHHHHCCHHHHHHHHHHHHHHHHHH
PTYLQFMTNIEPVFTLAYDYHLYAVLLPLVGVGAYWLDGIFFGLTAGSIIRNAALILAAI
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FFPLSWLLYQQWAMTGIWLSVWCLLLLRMLILAGFLYHAHQTSSYEKLQLDH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
SSMLPPRPMPSIDTRYARIIAIALPVLLANLAMPLQSVIDTAIIGNMNDTAKLAGIGLA
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
VQLLSLLLVSFNFLQYASSGLSAQALGQLANKNTAHNDTLKNNPSQQSPLLSILQRALVL
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
AFMIGAVLLLVKPWLIDFGLQALAANPDSGDAAKTYLNVRFWGVIAELMNFAFIGWFAGQ
HHHHHHHHHHHHHHHHHHCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
GKTRYMLYQQGFIAILNIILTLFFVFAMDMGLVGVALGTAIAFWLGVVLALWLSRLHLKI
CCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEE
SWQALFTADPQHFNKDKMLRLFSLNKDIFIRTLILTLSFAWITRLSAQSGDVILAANAIL
EEEEEEECCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHH
LQVLSISAFALDGVAVSAETLSGQAAGRRDWSRFRIIVKRTGIVSYGLAILLSAIWWLAM
HHHHHHHHHHHCCCEEEHHHHCCCCCCCCCHHHHEEHHHHCCHHHHHHHHHHHHHHHHHH
PTYLQFMTNIEPVFTLAYDYHLYAVLLPLVGVGAYWLDGIFFGLTAGSIIRNAALILAAI
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FFPLSWLLYQQWAMTGIWLSVWCLLLLRMLILAGFLYHAHQTSSYEKLQLDH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8265357; 9278503 [H]