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The map label for this gene is secD [H]

Identifier: 93005936

GI number: 93005936

Start: 1333011

End: 1334888

Strand: Reverse

Name: secD [H]

Synonym: Pcryo_1108

Alternate gene names: 93005936

Gene position: 1334888-1333011 (Counterclockwise)

Preceding gene: 93005937

Following gene: 93005935

Centisome position: 43.63

GC content: 45.79

Gene sequence:

>1878_bases
ATGCAATATCCCGCTTGGAAATACCTACTCATCACCGTCGTACTTATCATTGCCGGTCTATACGCTGCTCCTAACTTATA
TCCTGACGAACCTGCCGTACAGATTACCAGTGCTGCAGCAGGCACACAGTTGTCTGATGGCATTTTAACGCAGTCACAAG
ACTTGTTAAAAGAAGCTGGCTTGAACTACCATGATGGTACGTTCAAAGGTAACAGTGCATTGGTACGTCTTGACAATCCA
GTCGATCAGCTCAAAGCTCAGGAAGTATTGAGAAAAAACTTGGGTGAGAACTATGTAGTCGCACTGAACTTAGCGCAGAC
AACGCCGCAGTGGTTGCGTGATATCGGCGCAAAGCCCATGAAACTTGGTCTTGATTTGCGTGGCGGCGTTCGTTTCGTCT
TAGAAGTTGATATGGACAAGGCGCTCGAACAACGTCTGACCAGTGCCAGTCGCGATATTCGACGAGATCTAAGAGCTGAG
CGCATTGCTGTCAAAGGTATCAAAAACGACAAGCGTAGCGTGGTATTGCATTTTTCCGATACAGACACTCGTAACCGTGC
CCAAAACGTTTTGCAAAGCTCAATGGGTAATACCTTTGCCCTGCAATCTTCTATTGATGAGCAAGGCCCTGCCCTGATTT
TGGCGTATAACGATGCAACGCTTGATGAAATCAACAGCTATGCGGTCAATCAAAACTTGACTACCCTACGCAATCGTATT
GCTGAACTTGGGGTAACAGAAGCCTTGGTACAATCACAAGGTGCTAGCCGTATCGTCGTTGAGCTACCAGGTGTACAAGA
TACCGCTGAGGCAAAACGCGTCCTTGGTCGTACGGCCAATCTTGAATTCCGTATGGTCGCTGAAGGTGCCGAAAACTATA
CAGGCGGTATTCCACCTGCCGGTACTGAAGCGTTCCCATTTGAAACCCTTGATGGTCCGCCAGTATTATTAGAGCGCCAA
GCGATTGTCACTGGTGATAAAGTTACCAATGCTCAAACCGGTATTGATGAAAGTGGCTCACCTGAGGTTAGTATCACCTT
AGACAGTGCTGGTGGTAAGCTGATGCAGAATGCTACCCGTACAGCGGTTGGCAAACAAATGGCAGTATTGTTTATTGAAA
ATAAACAGCGCATCGCTTATGAAGAAGACCCAGTTACTGGCGAAACGACTGAAGTTCGGACGCCATATGCTGAAACAAAA
GTCATTAACCGTGCCAATATCCAAGCAGTACTAGGCTCATCTTTCCGTATCACTGGTCTGGATAGTAGTGCTGAAGCCGC
TGAGCTTGCATTGTTACTACGCTCAGGCGCGTTAGCGGCACCGATGTATTTTGTTGAAGAGCGCACCATTGGTCCATCAC
TGGGTCAGGAAAATATCGATAAAGGCTTATTCTCTACGCAGGTTGGTTACTTACTAGTCTTTGCATTTATGATTATCTTC
TATCGTCTGTTTGGTGTGATTGCCAATATTGCTCTAGCATTCAACGTTATTATTATTATCTCTATTATGTCCATCTTAGG
CTCATCACTGACGCTACCGGGTATCGCTGGTATTGTATTGACCATTGGTATGGCGGTCGATGCCAACGTGCTGATTTTTG
AGCGTATTCGCGAGGAAATAGCTAATGGAGTCAGACCGAAATCGGCTATCGTGGCAGGTTTTGATCGTGCTTATAGTAGT
ATTTTCGATGCCAATATCACAACCTTACTGGTCGCCTTTATCTTATTTGCGATTGGTACAGGTCCGATTAAAGGCTTTGC
GATTACTTTAGCCATTGGTATTGTCAGCTCGCTGTTTACGGCAATTTTAGTAACCCGTGCACTGATACAAATTGCTTATG
GTAAGCGTAAATCTATCAAACGTCTGAGCATCGGTTAG

Upstream 100 bases:

>100_bases
ATGACAGCTAAATAAGCACCTCACCATTGTTATCGCTAACTTCCCATCTGCTAACTTGTGGCCTGCGTCGCCAGTAGTTT
ATCAACCTAAAGAAGTGATT

Downstream 100 bases:

>100_bases
GAGAAAACTATGGCAATCGATAATAACAATCCTCTAGAAAAACAGAACAATCCAGAACCCAACGGCTCAAATAGTGAAGC
AAGTGGGCGTGGGCGTAAAA

Product: preprotein translocase subunit SecD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 625; Mature: 625

Protein sequence:

>625_residues
MQYPAWKYLLITVVLIIAGLYAAPNLYPDEPAVQITSAAAGTQLSDGILTQSQDLLKEAGLNYHDGTFKGNSALVRLDNP
VDQLKAQEVLRKNLGENYVVALNLAQTTPQWLRDIGAKPMKLGLDLRGGVRFVLEVDMDKALEQRLTSASRDIRRDLRAE
RIAVKGIKNDKRSVVLHFSDTDTRNRAQNVLQSSMGNTFALQSSIDEQGPALILAYNDATLDEINSYAVNQNLTTLRNRI
AELGVTEALVQSQGASRIVVELPGVQDTAEAKRVLGRTANLEFRMVAEGAENYTGGIPPAGTEAFPFETLDGPPVLLERQ
AIVTGDKVTNAQTGIDESGSPEVSITLDSAGGKLMQNATRTAVGKQMAVLFIENKQRIAYEEDPVTGETTEVRTPYAETK
VINRANIQAVLGSSFRITGLDSSAEAAELALLLRSGALAAPMYFVEERTIGPSLGQENIDKGLFSTQVGYLLVFAFMIIF
YRLFGVIANIALAFNVIIIISIMSILGSSLTLPGIAGIVLTIGMAVDANVLIFERIREEIANGVRPKSAIVAGFDRAYSS
IFDANITTLLVAFILFAIGTGPIKGFAITLAIGIVSSLFTAILVTRALIQIAYGKRKSIKRLSIG

Sequences:

>Translated_625_residues
MQYPAWKYLLITVVLIIAGLYAAPNLYPDEPAVQITSAAAGTQLSDGILTQSQDLLKEAGLNYHDGTFKGNSALVRLDNP
VDQLKAQEVLRKNLGENYVVALNLAQTTPQWLRDIGAKPMKLGLDLRGGVRFVLEVDMDKALEQRLTSASRDIRRDLRAE
RIAVKGIKNDKRSVVLHFSDTDTRNRAQNVLQSSMGNTFALQSSIDEQGPALILAYNDATLDEINSYAVNQNLTTLRNRI
AELGVTEALVQSQGASRIVVELPGVQDTAEAKRVLGRTANLEFRMVAEGAENYTGGIPPAGTEAFPFETLDGPPVLLERQ
AIVTGDKVTNAQTGIDESGSPEVSITLDSAGGKLMQNATRTAVGKQMAVLFIENKQRIAYEEDPVTGETTEVRTPYAETK
VINRANIQAVLGSSFRITGLDSSAEAAELALLLRSGALAAPMYFVEERTIGPSLGQENIDKGLFSTQVGYLLVFAFMIIF
YRLFGVIANIALAFNVIIIISIMSILGSSLTLPGIAGIVLTIGMAVDANVLIFERIREEIANGVRPKSAIVAGFDRAYSS
IFDANITTLLVAFILFAIGTGPIKGFAITLAIGIVSSLFTAILVTRALIQIAYGKRKSIKRLSIG
>Mature_625_residues
MQYPAWKYLLITVVLIIAGLYAAPNLYPDEPAVQITSAAAGTQLSDGILTQSQDLLKEAGLNYHDGTFKGNSALVRLDNP
VDQLKAQEVLRKNLGENYVVALNLAQTTPQWLRDIGAKPMKLGLDLRGGVRFVLEVDMDKALEQRLTSASRDIRRDLRAE
RIAVKGIKNDKRSVVLHFSDTDTRNRAQNVLQSSMGNTFALQSSIDEQGPALILAYNDATLDEINSYAVNQNLTTLRNRI
AELGVTEALVQSQGASRIVVELPGVQDTAEAKRVLGRTANLEFRMVAEGAENYTGGIPPAGTEAFPFETLDGPPVLLERQ
AIVTGDKVTNAQTGIDESGSPEVSITLDSAGGKLMQNATRTAVGKQMAVLFIENKQRIAYEEDPVTGETTEVRTPYAETK
VINRANIQAVLGSSFRITGLDSSAEAAELALLLRSGALAAPMYFVEERTIGPSLGQENIDKGLFSTQVGYLLVFAFMIIF
YRLFGVIANIALAFNVIIIISIMSILGSSLTLPGIAGIVLTIGMAVDANVLIFERIREEIANGVRPKSAIVAGFDRAYSS
IFDANITTLLVAFILFAIGTGPIKGFAITLAIGIVSSLFTAILVTRALIQIAYGKRKSIKRLSIG

Specific function: Involved in protein export [H]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=628, Percent_Identity=47.7707006369427, Blast_Score=528, Evalue=1e-151,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 67439; Mature: 67439

Theoretical pI: Translated: 5.31; Mature: 5.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQYPAWKYLLITVVLIIAGLYAAPNLYPDEPAVQITSAAAGTQLSDGILTQSQDLLKEAG
CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCHHHCCHHHHHHCC
LNYHDGTFKGNSALVRLDNPVDQLKAQEVLRKNLGENYVVALNLAQTTPQWLRDIGAKPM
CCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHCCCCCE
KLGLDLRGGVRFVLEVDMDKALEQRLTSASRDIRRDLRAERIAVKGIKNDKRSVVLHFSD
EECCEECCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECC
TDTRNRAQNVLQSSMGNTFALQSSIDEQGPALILAYNDATLDEINSYAVNQNLTTLRNRI
CCHHHHHHHHHHHHCCCEEEECCCCCCCCCEEEEEECCCCHHHHHHHHHCCCHHHHHHHH
AELGVTEALVQSQGASRIVVELPGVQDTAEAKRVLGRTANLEFRMVAEGAENYTGGIPPA
HHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCC
GTEAFPFETLDGPPVLLERQAIVTGDKVTNAQTGIDESGSPEVSITLDSAGGKLMQNATR
CCCCCCCCCCCCCCEEEECCEEECCCCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHH
TAVGKQMAVLFIENKQRIAYEEDPVTGETTEVRTPYAETKVINRANIQAVLGSSFRITGL
HHHCCEEEEEEEECCCCEEECCCCCCCCCCCCCCCHHHHHHHCCCCHHHHHCCCEEEECC
DSSAEAAELALLLRSGALAAPMYFVEERTIGPSLGQENIDKGLFSTQVGYLLVFAFMIIF
CCCHHHHHHHHHHHCCCHHCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
YRLFGVIANIALAFNVIIIISIMSILGSSLTLPGIAGIVLTIGMAVDANVLIFERIREEI
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHH
ANGVRPKSAIVAGFDRAYSSIFDANITTLLVAFILFAIGTGPIKGFAITLAIGIVSSLFT
HCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
AILVTRALIQIAYGKRKSIKRLSIG
HHHHHHHHHHHHHCCHHCCHHCCCC
>Mature Secondary Structure
MQYPAWKYLLITVVLIIAGLYAAPNLYPDEPAVQITSAAAGTQLSDGILTQSQDLLKEAG
CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCHHHCCHHHHHHCC
LNYHDGTFKGNSALVRLDNPVDQLKAQEVLRKNLGENYVVALNLAQTTPQWLRDIGAKPM
CCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHCCCCCE
KLGLDLRGGVRFVLEVDMDKALEQRLTSASRDIRRDLRAERIAVKGIKNDKRSVVLHFSD
EECCEECCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECC
TDTRNRAQNVLQSSMGNTFALQSSIDEQGPALILAYNDATLDEINSYAVNQNLTTLRNRI
CCHHHHHHHHHHHHCCCEEEECCCCCCCCCEEEEEECCCCHHHHHHHHHCCCHHHHHHHH
AELGVTEALVQSQGASRIVVELPGVQDTAEAKRVLGRTANLEFRMVAEGAENYTGGIPPA
HHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCC
GTEAFPFETLDGPPVLLERQAIVTGDKVTNAQTGIDESGSPEVSITLDSAGGKLMQNATR
CCCCCCCCCCCCCCEEEECCEEECCCCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHH
TAVGKQMAVLFIENKQRIAYEEDPVTGETTEVRTPYAETKVINRANIQAVLGSSFRITGL
HHHCCEEEEEEEECCCCEEECCCCCCCCCCCCCCCHHHHHHHCCCCHHHHHCCCEEEECC
DSSAEAAELALLLRSGALAAPMYFVEERTIGPSLGQENIDKGLFSTQVGYLLVFAFMIIF
CCCHHHHHHHHHHHCCCHHCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
YRLFGVIANIALAFNVIIIISIMSILGSSLTLPGIAGIVLTIGMAVDANVLIFERIREEI
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHH
ANGVRPKSAIVAGFDRAYSSIFDANITTLLVAFILFAIGTGPIKGFAITLAIGIVSSLFT
HCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
AILVTRALIQIAYGKRKSIKRLSIG
HHHHHHHHHHHHHCCHHCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]