| Definition | Psychrobacter cryohalolentis K5 chromosome, complete genome. |
|---|---|
| Accession | NC_007969 |
| Length | 3,059,876 |
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The map label for this gene is hsdM [H]
Identifier: 93005780
GI number: 93005780
Start: 1134901
End: 1137330
Strand: Reverse
Name: hsdM [H]
Synonym: Pcryo_0952
Alternate gene names: 93005780
Gene position: 1137330-1134901 (Counterclockwise)
Preceding gene: 93005785
Following gene: 93005779
Centisome position: 37.17
GC content: 46.01
Gene sequence:
>2430_bases ATGGCACTTAAGAAAACCGAGATTTATTCTACCCTTTGGGCAAGCTGTAACGAGTTACGCGGCGGCATGGATGCGAGTCA ATACAAGGACTATGTATTGACCATGTTATTTATGAAGTATGTGTCTGATAAATACAAAGACGACGCTTTTGGCGATATCG TAGTGCCGGAAGGTGGTAGCTTCGATGATATGGTCGCGCTGAAGGGTGATAAAGAGATTGGCGAAAAAGTCGACAAGATT ATCGCTAAGCTGGCTGAAGCCAACGGTTTGCGCGGTGTCATTGATGTTGCTGACTTTAACGATGAAGAAAAACTCGGTAC AGGCAAAGAGCATGTCGATCGCTTATCGAAGCTGATTGGTATTTTTGAAGGATTGGATTTATCAGGCAACCGTGCTGATG GTGATGACCTACTAGGCGATGCTTACGAATACCTCATGCGTCACTTCGCTACTGAATCTGGTAAATCTAAGGGGCAGTTT TATACGCCATCGGAAGTATCACGTATTTTGGCGAAGATTATTGGTGTTGACGACAATACACCACTAGACGCGACTGTATA CGACCCAGCCTGCGGTTCAGGCTCTCTACTGCTTAAAGTTAGCGATGAAGCGCCACGTGGCTTGACTATCTATGGTCAAG AGATGGACTTCGCGACTACCGCATTGGCAAAGATGAATATGATATTGCATGGAGCAACAGGTGCTGACATCTATAAAGGC AACACCCTATCCTCTCCGCACTTTGTAGAAGGCAATCAGCTCAAGACTTTCGATTTTATCGTAGCAAACCCGCCGTTTAG TAATAAGAACTGGACCAGTGGTTTAAACCCAGAGTCGGATGAGTTTGACCGCTTTACTTGGGGTATTCCGCCCGAGAAGA ACGGTGATTATGCTTTTCTATTACATATTATCAAAAGCTTAAAAAGCACGGGTGTTGGCGCAGTCATTTTGCCACATGGT GTGCTGTTCCGAGGCAATGCCGAAGCGCATATTCGCCAGAACTTAATCAAGCAAGGCTATATCAAAGGTATCATAGGCTT GCCAGCTAACCTGTTCTACGGTACGGGCATCCCTGCTTGTGTCATCGTGATTGATAAAAACACCGCACAGAGCCGAGCCA AAGGTGACGCGGGTCTGTTTATGGTCGATGCTAGCCGGGGCTATATGAAAGACGGTAATAAAAACCGTCTACGTAGCCAA GATATTCACAAAATCGTCGATGTCTTTAACTCTCAACTGAATCTGACAGGCTATAGCCGAATGGTTGAGTTGGATGAGAT CATCGATAACGACTATAACTTAAACATTCCACGCTATATCGATGCCAGTATTGATGAAGATCAGCACGATCTAACCGCGC ATTTAAAAGGCGGTATTCCTGTTGCCGATATCGACTCTCTAGAGTCTTATTGGCAGGTATTACCTAACTTACGCAAAACG CTATTCTCCGAGCTTAAGCATAGTGGAAACGGTTACTGTGAGTGTCTCGTGGCATCGACTGAGATCAAGGCGGCGGTATT GGCTCATCCTGAGTTCATTACCTTTGCTGAGCAAAGCCTAACGCCATTCAATGACTGGTGGCAAGCTACTCAGTTAAGTG AAATCACCAAAGGCGATAGGCCTAAAGCCCTTATCCACAAAATCAGTGAAGACCTGCTACAACGCTACGAAATAGCGCCG CTGCTAGATAAGTATGATATTTATCAAATCTTGATGGACTACTGGAGTGAAAGCTTGCAGGACGATGTCTATGCCATTAG TCAAGATGGCTGGCAAGTCGGAGCCCAGCTACGCAAGTTGGTCGTGGCTAAAGGTGAAAAGCTTAAGGAAGAGCCTGACC TGATTATTAATAAGGTGAAATATAAAGCGGAGCTTATCCCGCCTGCGCTTATCATCGACCGCTACTATAGCGATGAGCAA GCCCATATCGATGCACTACAGGCTGAGCTAGACACCATCTCAAGTACCATAGCTGACTACGTTGAGGAGCATGGAGATGA GGAAGGCTTACTAGCCGATGCCGCTAATGAAAAAGGCAGCTTTAATAAGTCTAGCGTCAACGCGCGTCTAAAGCTCGCCA CCGATAGCGATGAAATCGAGGCACTCAAGCAACTGCTCGCTTACTTCGAGTTAGAAGCCAATGCGAAAAAGGTATTAAAA GAAGCGCAAGAAACATTGGATCTGGCGGTATTTAAACACTACCCGACTTTGGATGAAGCGGCTATCAAAACGCTATTGAT CGAGGATAAATGGCACGCCACTCTACAAGGGCGTATCGAAGATGAGATTGAGCGTATCACTGCCCAGCTTGCTAACCGTA TTAAAGAACTGGATGAGCGTTATGCTGAGCCTTTATCGCAAATCGTAGATGAGGTGGAGATGTTAGGTCAAAAAGTGCAA GCGCATCTGCAAGCGATGGGAGTGGCGTAA
Upstream 100 bases:
>100_bases AAGTCAGTCTATATGACGAGAATACGAGCTGTAATGTGATACCATTCTTCGATAATTTTTTCACTTAATAAAACATTCTC TGATTATAAGACTTATAACT
Downstream 100 bases:
>100_bases TGAATGAGGTTAAAATGCCTGAGGGTTATAAGCAAACTGAAATTGGGGTTATCCCTGAGGATTGGGAAGTTAAAGATATT GGTGAAGCTTTAACAATCAG
Product: type I restriction-modification system, M subunit
Products: NA
Alternate protein names: M.EcoR124II [H]
Number of amino acids: Translated: 809; Mature: 808
Protein sequence:
>809_residues MALKKTEIYSTLWASCNELRGGMDASQYKDYVLTMLFMKYVSDKYKDDAFGDIVVPEGGSFDDMVALKGDKEIGEKVDKI IAKLAEANGLRGVIDVADFNDEEKLGTGKEHVDRLSKLIGIFEGLDLSGNRADGDDLLGDAYEYLMRHFATESGKSKGQF YTPSEVSRILAKIIGVDDNTPLDATVYDPACGSGSLLLKVSDEAPRGLTIYGQEMDFATTALAKMNMILHGATGADIYKG NTLSSPHFVEGNQLKTFDFIVANPPFSNKNWTSGLNPESDEFDRFTWGIPPEKNGDYAFLLHIIKSLKSTGVGAVILPHG VLFRGNAEAHIRQNLIKQGYIKGIIGLPANLFYGTGIPACVIVIDKNTAQSRAKGDAGLFMVDASRGYMKDGNKNRLRSQ DIHKIVDVFNSQLNLTGYSRMVELDEIIDNDYNLNIPRYIDASIDEDQHDLTAHLKGGIPVADIDSLESYWQVLPNLRKT LFSELKHSGNGYCECLVASTEIKAAVLAHPEFITFAEQSLTPFNDWWQATQLSEITKGDRPKALIHKISEDLLQRYEIAP LLDKYDIYQILMDYWSESLQDDVYAISQDGWQVGAQLRKLVVAKGEKLKEEPDLIINKVKYKAELIPPALIIDRYYSDEQ AHIDALQAELDTISSTIADYVEEHGDEEGLLADAANEKGSFNKSSVNARLKLATDSDEIEALKQLLAYFELEANAKKVLK EAQETLDLAVFKHYPTLDEAAIKTLLIEDKWHATLQGRIEDEIERITAQLANRIKELDERYAEPLSQIVDEVEMLGQKVQ AHLQAMGVA
Sequences:
>Translated_809_residues MALKKTEIYSTLWASCNELRGGMDASQYKDYVLTMLFMKYVSDKYKDDAFGDIVVPEGGSFDDMVALKGDKEIGEKVDKI IAKLAEANGLRGVIDVADFNDEEKLGTGKEHVDRLSKLIGIFEGLDLSGNRADGDDLLGDAYEYLMRHFATESGKSKGQF YTPSEVSRILAKIIGVDDNTPLDATVYDPACGSGSLLLKVSDEAPRGLTIYGQEMDFATTALAKMNMILHGATGADIYKG NTLSSPHFVEGNQLKTFDFIVANPPFSNKNWTSGLNPESDEFDRFTWGIPPEKNGDYAFLLHIIKSLKSTGVGAVILPHG VLFRGNAEAHIRQNLIKQGYIKGIIGLPANLFYGTGIPACVIVIDKNTAQSRAKGDAGLFMVDASRGYMKDGNKNRLRSQ DIHKIVDVFNSQLNLTGYSRMVELDEIIDNDYNLNIPRYIDASIDEDQHDLTAHLKGGIPVADIDSLESYWQVLPNLRKT LFSELKHSGNGYCECLVASTEIKAAVLAHPEFITFAEQSLTPFNDWWQATQLSEITKGDRPKALIHKISEDLLQRYEIAP LLDKYDIYQILMDYWSESLQDDVYAISQDGWQVGAQLRKLVVAKGEKLKEEPDLIINKVKYKAELIPPALIIDRYYSDEQ AHIDALQAELDTISSTIADYVEEHGDEEGLLADAANEKGSFNKSSVNARLKLATDSDEIEALKQLLAYFELEANAKKVLK EAQETLDLAVFKHYPTLDEAAIKTLLIEDKWHATLQGRIEDEIERITAQLANRIKELDERYAEPLSQIVDEVEMLGQKVQ AHLQAMGVA >Mature_808_residues ALKKTEIYSTLWASCNELRGGMDASQYKDYVLTMLFMKYVSDKYKDDAFGDIVVPEGGSFDDMVALKGDKEIGEKVDKII AKLAEANGLRGVIDVADFNDEEKLGTGKEHVDRLSKLIGIFEGLDLSGNRADGDDLLGDAYEYLMRHFATESGKSKGQFY TPSEVSRILAKIIGVDDNTPLDATVYDPACGSGSLLLKVSDEAPRGLTIYGQEMDFATTALAKMNMILHGATGADIYKGN TLSSPHFVEGNQLKTFDFIVANPPFSNKNWTSGLNPESDEFDRFTWGIPPEKNGDYAFLLHIIKSLKSTGVGAVILPHGV LFRGNAEAHIRQNLIKQGYIKGIIGLPANLFYGTGIPACVIVIDKNTAQSRAKGDAGLFMVDASRGYMKDGNKNRLRSQD IHKIVDVFNSQLNLTGYSRMVELDEIIDNDYNLNIPRYIDASIDEDQHDLTAHLKGGIPVADIDSLESYWQVLPNLRKTL FSELKHSGNGYCECLVASTEIKAAVLAHPEFITFAEQSLTPFNDWWQATQLSEITKGDRPKALIHKISEDLLQRYEIAPL LDKYDIYQILMDYWSESLQDDVYAISQDGWQVGAQLRKLVVAKGEKLKEEPDLIINKVKYKAELIPPALIIDRYYSDEQA HIDALQAELDTISSTIADYVEEHGDEEGLLADAANEKGSFNKSSVNARLKLATDSDEIEALKQLLAYFELEANAKKVLKE AQETLDLAVFKHYPTLDEAAIKTLLIEDKWHATLQGRIEDEIERITAQLANRIKELDERYAEPLSQIVDEVEMLGQKVQA HLQAMGVA
Specific function: Methylation of specific adenine residues; required for both restriction and modification activities. The EcoR124/3 I enzyme recognizes 5'-GAAN(7)RTCG-3' [H]
COG id: COG0286
COG function: function code V; Type I restriction-modification system methyltransferase subunit
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the N(4)/N(6)-methyltransferase family [H]
Homologues:
Organism=Escherichia coli, GI1790808, Length=390, Percent_Identity=25.8974358974359, Blast_Score=115, Evalue=1e-26,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR022749 - InterPro: IPR003356 - InterPro: IPR002052 - InterPro: IPR002296 - InterPro: IPR004546 [H]
Pfam domain/function: PF12161 HsdM_N; PF02384 N6_Mtase [H]
EC number: =2.1.1.72 [H]
Molecular weight: Translated: 90039; Mature: 89908
Theoretical pI: Translated: 4.58; Mature: 4.58
Prosite motif: PS00092 N6_MTASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MALKKTEIYSTLWASCNELRGGMDASQYKDYVLTMLFMKYVSDKYKDDAFGDIVVPEGGS CCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCC FDDMVALKGDKEIGEKVDKIIAKLAEANGLRGVIDVADFNDEEKLGTGKEHVDRLSKLIG CCCEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHCCCCHHHHHHHHHHHH IFEGLDLSGNRADGDDLLGDAYEYLMRHFATESGKSKGQFYTPSEVSRILAKIIGVDDNT HHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCC PLDATVYDPACGSGSLLLKVSDEAPRGLTIYGQEMDFATTALAKMNMILHGATGADIYKG CCCEEEECCCCCCCCEEEEECCCCCCCEEEEECCCHHHHHHHHHHHHHEECCCCCCEECC NTLSSPHFVEGNQLKTFDFIVANPPFSNKNWTSGLNPESDEFDRFTWGIPPEKNGDYAFL CCCCCCCEECCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCHHHH LHIIKSLKSTGVGAVILPHGVLFRGNAEAHIRQNLIKQGYIKGIIGLPANLFYGTGIPAC HHHHHHHHHCCCCEEEECCCEEEECCCHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCEE VIVIDKNTAQSRAKGDAGLFMVDASRGYMKDGNKNRLRSQDIHKIVDVFNSQLNLTGYSR EEEEECCCCHHHCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHH MVELDEIIDNDYNLNIPRYIDASIDEDQHDLTAHLKGGIPVADIDSLESYWQVLPNLRKT HHHHHHHHCCCCCCCCCCEECCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH LFSELKHSGNGYCECLVASTEIKAAVLAHPEFITFAEQSLTPFNDWWQATQLSEITKGDR HHHHHHHCCCCEEEEEEECCHHCCHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCC PKALIHKISEDLLQRYEIAPLLDKYDIYQILMDYWSESLQDDVYAISQDGWQVGAQLRKL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHH VVAKGEKLKEEPDLIINKVKYKAELIPPALIIDRYYSDEQAHIDALQAELDTISSTIADY HHHCCHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH VEEHGDEEGLLADAANEKGSFNKSSVNARLKLATDSDEIEALKQLLAYFELEANAKKVLK HHHCCCCCCCEEECCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCHHHHHH EAQETLDLAVFKHYPTLDEAAIKTLLIEDKWHATLQGRIEDEIERITAQLANRIKELDER HHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH YAEPLSQIVDEVEMLGQKVQAHLQAMGVA HHHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure ALKKTEIYSTLWASCNELRGGMDASQYKDYVLTMLFMKYVSDKYKDDAFGDIVVPEGGS CCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCC FDDMVALKGDKEIGEKVDKIIAKLAEANGLRGVIDVADFNDEEKLGTGKEHVDRLSKLIG CCCEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHCCCCHHHHHHHHHHHH IFEGLDLSGNRADGDDLLGDAYEYLMRHFATESGKSKGQFYTPSEVSRILAKIIGVDDNT HHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCC PLDATVYDPACGSGSLLLKVSDEAPRGLTIYGQEMDFATTALAKMNMILHGATGADIYKG CCCEEEECCCCCCCCEEEEECCCCCCCEEEEECCCHHHHHHHHHHHHHEECCCCCCEECC NTLSSPHFVEGNQLKTFDFIVANPPFSNKNWTSGLNPESDEFDRFTWGIPPEKNGDYAFL CCCCCCCEECCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCHHHH LHIIKSLKSTGVGAVILPHGVLFRGNAEAHIRQNLIKQGYIKGIIGLPANLFYGTGIPAC HHHHHHHHHCCCCEEEECCCEEEECCCHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCEE VIVIDKNTAQSRAKGDAGLFMVDASRGYMKDGNKNRLRSQDIHKIVDVFNSQLNLTGYSR EEEEECCCCHHHCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHH MVELDEIIDNDYNLNIPRYIDASIDEDQHDLTAHLKGGIPVADIDSLESYWQVLPNLRKT HHHHHHHHCCCCCCCCCCEECCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH LFSELKHSGNGYCECLVASTEIKAAVLAHPEFITFAEQSLTPFNDWWQATQLSEITKGDR HHHHHHHCCCCEEEEEEECCHHCCHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCC PKALIHKISEDLLQRYEIAPLLDKYDIYQILMDYWSESLQDDVYAISQDGWQVGAQLRKL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHH VVAKGEKLKEEPDLIINKVKYKAELIPPALIIDRYYSDEQAHIDALQAELDTISSTIADY HHHCCHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH VEEHGDEEGLLADAANEKGSFNKSSVNARLKLATDSDEIEALKQLLAYFELEANAKKVLK HHHCCCCCCCEEECCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCHHHHHH EAQETLDLAVFKHYPTLDEAAIKTLLIEDKWHATLQGRIEDEIERITAQLANRIKELDER HHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH YAEPLSQIVDEVEMLGQKVQAHLQAMGVA HHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2784505 [H]