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The map label for this gene is rnfB [H]

Identifier: 93005680

GI number: 93005680

Start: 1008026

End: 1008868

Strand: Reverse

Name: rnfB [H]

Synonym: Pcryo_0852

Alternate gene names: 93005680

Gene position: 1008868-1008026 (Counterclockwise)

Preceding gene: 93005681

Following gene: 93005679

Centisome position: 32.97

GC content: 45.67

Gene sequence:

>843_bases
ATGCAAAGCACCATGAATAAAAACAGCAATCATATCCGTTTAACCAATCTGCCAATCTTATTCGATTCGCTGAAGATAGA
AACATTGCCTGCTGATGTTCAGGAAAAAATTGCGCGCATTGATGGCAGCCTACCGCAAACACAGTGCGGTCTATGCGACC
ATGCTGATGGTTGCTTACCTTATGCAGTTGCTATCGTGATGGATGGTGAGCCACATAATAAGTGTGTACCGGGTGGTCAG
CCAGTGGCGGATACTATCGCGCAGATTATCGATGCTGATATGCCAACACTAAGCGCTGAACCTTCAAAATGGCCGTTAGA
TTCTACTTCTCAGCGGCCTGTTGAAGTGCGTGCCGTCATTCGTGAAGATGATTGCATTGGCTGTACCAAATGTATTCCCG
CCTGCCCTGTTGATGCCATCGTTGGTACTGGCAAGCATATGCATACTATTTTTACGGATTTATGCACGGGCTGTGAATTA
TGTATAGCGCCCTGCCCTGTTGACTGCATCGATTTGGTCACGGTTGAGCGTACGCTTTCGACACCTGAGCGCACCCTTGA
GCAAGAGGATTTGAGACAGCGTTATCATACCCATTTAAATCGTGTCAGCAAGCAACTTGCGGATAGCAGCAATAGTAGAC
CCGTGGTCAGCATGGTGGAGGCAAAACTGAATAATGCCGCCAGTCAGTCGTTAAATATCAGTGAAGCTCAAGCAAAAAAC
ACTATTGCAGCGGCAAAGCTGCGCAGTAAAATTAAAAAGTTAGAAAAACAGCTTAGCGTACGTCCCAATGAAAGCAAACA
AGCAGAATTGAATGAATTAAAAGCTGAGCTTGCACAACTTTAA

Upstream 100 bases:

>100_bases
ATCTATCATATCAACGCCTCATTCAGCATTTATCCATATCACTATTATCCTATTTATTTTAATATCAGCATCTAGCACTG
ATATAAAGGTTTTACATTAA

Downstream 100 bases:

>100_bases
TAGCCAATATCTACTTTTGAATAACCAATGAACAAAATAATGGTAAAAATACCATGAGTAAAACCGTCAAACATAAAACA
GCTGATACTCCGCCATCGAG

Product: RnfABCDGE type electron transport complex subunit B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 280; Mature: 280

Protein sequence:

>280_residues
MQSTMNKNSNHIRLTNLPILFDSLKIETLPADVQEKIARIDGSLPQTQCGLCDHADGCLPYAVAIVMDGEPHNKCVPGGQ
PVADTIAQIIDADMPTLSAEPSKWPLDSTSQRPVEVRAVIREDDCIGCTKCIPACPVDAIVGTGKHMHTIFTDLCTGCEL
CIAPCPVDCIDLVTVERTLSTPERTLEQEDLRQRYHTHLNRVSKQLADSSNSRPVVSMVEAKLNNAASQSLNISEAQAKN
TIAAAKLRSKIKKLEKQLSVRPNESKQAELNELKAELAQL

Sequences:

>Translated_280_residues
MQSTMNKNSNHIRLTNLPILFDSLKIETLPADVQEKIARIDGSLPQTQCGLCDHADGCLPYAVAIVMDGEPHNKCVPGGQ
PVADTIAQIIDADMPTLSAEPSKWPLDSTSQRPVEVRAVIREDDCIGCTKCIPACPVDAIVGTGKHMHTIFTDLCTGCEL
CIAPCPVDCIDLVTVERTLSTPERTLEQEDLRQRYHTHLNRVSKQLADSSNSRPVVSMVEAKLNNAASQSLNISEAQAKN
TIAAAKLRSKIKKLEKQLSVRPNESKQAELNELKAELAQL
>Mature_280_residues
MQSTMNKNSNHIRLTNLPILFDSLKIETLPADVQEKIARIDGSLPQTQCGLCDHADGCLPYAVAIVMDGEPHNKCVPGGQ
PVADTIAQIIDADMPTLSAEPSKWPLDSTSQRPVEVRAVIREDDCIGCTKCIPACPVDAIVGTGKHMHTIFTDLCTGCEL
CIAPCPVDCIDLVTVERTLSTPERTLEQEDLRQRYHTHLNRVSKQLADSSNSRPVVSMVEAKLNNAASQSLNISEAQAKN
TIAAAKLRSKIKKLEKQLSVRPNESKQAELNELKAELAQL

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG2878

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfB

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1787915, Length=144, Percent_Identity=51.3888888888889, Blast_Score=135, Evalue=3e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001450
- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR010207
- InterPro:   IPR016463
- InterPro:   IPR007202 [H]

Pfam domain/function: PF00037 Fer4; PF04060 FeS [H]

EC number: NA

Molecular weight: Translated: 30570; Mature: 30570

Theoretical pI: Translated: 5.91; Mature: 5.91

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.6 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
6.8 %Cys+Met (Translated Protein)
4.6 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
6.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQSTMNKNSNHIRLTNLPILFDSLKIETLPADVQEKIARIDGSLPQTQCGLCDHADGCLP
CCCCCCCCCCEEEEEECCEEEECCEEEECCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
YAVAIVMDGEPHNKCVPGGQPVADTIAQIIDADMPTLSAEPSKWPLDSTSQRPVEVRAVI
EEEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEHEEE
REDDCIGCTKCIPACPVDAIVGTGKHMHTIFTDLCTGCELCIAPCPVDCIDLVTVERTLS
CCCCCCCHHHHCCCCCHHHHHCCCCHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHC
TPERTLEQEDLRQRYHTHLNRVSKQLADSSNSRPVVSMVEAKLNNAASQSLNISEAQAKN
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHH
TIAAAKLRSKIKKLEKQLSVRPNESKQAELNELKAELAQL
HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCC
>Mature Secondary Structure
MQSTMNKNSNHIRLTNLPILFDSLKIETLPADVQEKIARIDGSLPQTQCGLCDHADGCLP
CCCCCCCCCCEEEEEECCEEEECCEEEECCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
YAVAIVMDGEPHNKCVPGGQPVADTIAQIIDADMPTLSAEPSKWPLDSTSQRPVEVRAVI
EEEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEHEEE
REDDCIGCTKCIPACPVDAIVGTGKHMHTIFTDLCTGCELCIAPCPVDCIDLVTVERTLS
CCCCCCCHHHHCCCCCHHHHHCCCCHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHC
TPERTLEQEDLRQRYHTHLNRVSKQLADSSNSRPVVSMVEAKLNNAASQSLNISEAQAKN
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHH
TIAAAKLRSKIKKLEKQLSVRPNESKQAELNELKAELAQL
HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA