Click here to switch to the map view.

The map label for this gene is nudC [H]

Identifier: 93005681

GI number: 93005681

Start: 1008968

End: 1010023

Strand: Reverse

Name: nudC [H]

Synonym: Pcryo_0853

Alternate gene names: 93005681

Gene position: 1010023-1008968 (Counterclockwise)

Preceding gene: 93005682

Following gene: 93005680

Centisome position: 33.01

GC content: 43.94

Gene sequence:

>1056_bases
ATGATGATCTGCGCCTTTGTCCTATCTGATGAAACGATCTTATGTCGTCAAACGCCTAATGGCTGGTGGCCTTTACAGGT
TGAGCTAGCACACTCTGATGTCAGTAGTGAGCAAGCTTATCAATTAGGACAGGTTACATTGTTTGATAGCTTAGCGCCCA
ATAGCTGGCTGCTGAGTGATGTAGATGATACTGATAACGCTAATGCTAATGCTAATGCTAATGCTAATGCTAATGCTAAT
GCTAATGCTAATGCTAATGCTAATGCTGTCACTGTACAAGCAAGCCGCGCTATCACTTATGATTATGCAATAGCACATAA
TATCGCCTTACCCAGTATTTTAGACAGTGATGAATTAACAAGTAGTGACTTGGATAGCAGCGTTATTAGCAATGTAGAGA
ACAGTATTAACACTTTTATACCTTATCGACAGCTTATCACGCACCTGCCCATAGCATTAGCTGCTCAGCTTAGCCAAGCC
ATACAACTACTTCGTTGGCAAGCAGATACACAGTTTTGTAGTCGCTGCGCGGCACGCACTGTAGCTGCCAAATGCGGTGA
GCGTGCTATGGTTTGTGACGTTTGTCGATTGCGTCAGTATCCGCGTGTACAGCCCTGCGTCATTACCGCCATTACTCGAC
CCAACCCGCAAACGGGTGAAATGCAAATTTTGTTGGCTCATCATCATCGTTACGGTCAGCAAAAAACAGCCTCTCATTTA
TTACAGTCGCCCCAACCGTTACTATACGGTTTGATTGCAGGCTTTGTAGAAGTAGGTGAAAGCCTAGAGCATGCTGTGGT
ACGCGAAGTGGCAGAAGAAGTGGGTCTTAGCTTGTCCGATATTCGCTATGTGAACAGTCAACCATGGCCGTTTCCGTCTA
ATTTGATGTTGGGTTTTCGAGCATCTTATGCAGATGGCGATATCGTTATACAAGAAGATGAGCTATCACATGCAGATTTT
TTCGATCTATCAAAGCTGCCAAAAATACCCTTTAAGGGTAGCATTGCTTATGAGCTGATTGCGCAAATTGCCAATGAGCA
AGGTATTTTGCTTTAA

Upstream 100 bases:

>100_bases
AGCATAGCTTAAGCCAATTGCTTGCCGCTTAATCATTTATGTAAATTTTTATACAAAGACAAGCTGATATGAGCTTGTCT
TTGACCGTTTGGAAACCTAT

Downstream 100 bases:

>100_bases
TCTATCATATCAACGCCTCATTCAGCATTTATCCATATCACTATTATCCTATTTATTTTAATATCAGCATCTAGCACTGA
TATAAAGGTTTTACATTAAA

Product: NUDIX hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 351; Mature: 351

Protein sequence:

>351_residues
MMICAFVLSDETILCRQTPNGWWPLQVELAHSDVSSEQAYQLGQVTLFDSLAPNSWLLSDVDDTDNANANANANANANAN
ANANANANAVTVQASRAITYDYAIAHNIALPSILDSDELTSSDLDSSVISNVENSINTFIPYRQLITHLPIALAAQLSQA
IQLLRWQADTQFCSRCAARTVAAKCGERAMVCDVCRLRQYPRVQPCVITAITRPNPQTGEMQILLAHHHRYGQQKTASHL
LQSPQPLLYGLIAGFVEVGESLEHAVVREVAEEVGLSLSDIRYVNSQPWPFPSNLMLGFRASYADGDIVIQEDELSHADF
FDLSKLPKIPFKGSIAYELIAQIANEQGILL

Sequences:

>Translated_351_residues
MMICAFVLSDETILCRQTPNGWWPLQVELAHSDVSSEQAYQLGQVTLFDSLAPNSWLLSDVDDTDNANANANANANANAN
ANANANANAVTVQASRAITYDYAIAHNIALPSILDSDELTSSDLDSSVISNVENSINTFIPYRQLITHLPIALAAQLSQA
IQLLRWQADTQFCSRCAARTVAAKCGERAMVCDVCRLRQYPRVQPCVITAITRPNPQTGEMQILLAHHHRYGQQKTASHL
LQSPQPLLYGLIAGFVEVGESLEHAVVREVAEEVGLSLSDIRYVNSQPWPFPSNLMLGFRASYADGDIVIQEDELSHADF
FDLSKLPKIPFKGSIAYELIAQIANEQGILL
>Mature_351_residues
MMICAFVLSDETILCRQTPNGWWPLQVELAHSDVSSEQAYQLGQVTLFDSLAPNSWLLSDVDDTDNANANANANANANAN
ANANANANAVTVQASRAITYDYAIAHNIALPSILDSDELTSSDLDSSVISNVENSINTFIPYRQLITHLPIALAAQLSQA
IQLLRWQADTQFCSRCAARTVAAKCGERAMVCDVCRLRQYPRVQPCVITAITRPNPQTGEMQILLAHHHRYGQQKTASHL
LQSPQPLLYGLIAGFVEVGESLEHAVVREVAEEVGLSLSDIRYVNSQPWPFPSNLMLGFRASYADGDIVIQEDELSHADF
FDLSKLPKIPFKGSIAYELIAQIANEQGILL

Specific function: Unknown

COG id: COG2816

COG function: function code L; NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 nudix hydrolase domain [H]

Homologues:

Organism=Homo sapiens, GI13899267, Length=188, Percent_Identity=30.3191489361702, Blast_Score=92, Evalue=5e-19,
Organism=Homo sapiens, GI50593112, Length=188, Percent_Identity=34.0425531914894, Blast_Score=89, Evalue=6e-18,
Organism=Escherichia coli, GI48994995, Length=198, Percent_Identity=40.4040404040404, Blast_Score=141, Evalue=7e-35,
Organism=Caenorhabditis elegans, GI71986510, Length=215, Percent_Identity=30.6976744186047, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI212645999, Length=215, Percent_Identity=30.6976744186047, Blast_Score=79, Evalue=3e-15,
Organism=Saccharomyces cerevisiae, GI6321371, Length=226, Percent_Identity=29.646017699115, Blast_Score=88, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015375
- InterPro:   IPR022925
- InterPro:   IPR020084
- InterPro:   IPR000086
- InterPro:   IPR015797
- InterPro:   IPR015376 [H]

Pfam domain/function: PF00293 NUDIX; PF09296 NUDIX-like; PF09297 zf-NADH-PPase [H]

EC number: =3.6.1.22 [H]

Molecular weight: Translated: 38522; Mature: 38522

Theoretical pI: Translated: 4.56; Mature: 4.56

Prosite motif: PS00893 NUDIX

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMICAFVLSDETILCRQTPNGWWPLQVELAHSDVSSEQAYQLGQVTLFDSLAPNSWLLSD
CEEEEEEECCCEEEEEECCCCCCEEEEEEECCCCCHHHHHHHCCEEEECCCCCCCCEEEC
VDDTDNANANANANANANANANANANANAVTVQASRAITYDYAIAHNIALPSILDSDELT
CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCEEEEHHHHHHCCCCCCCCCCCCCC
SSDLDSSVISNVENSINTFIPYRQLITHLPIALAAQLSQAIQLLRWQADTQFCSRCAART
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VAAKCGERAMVCDVCRLRQYPRVQPCVITAITRPNPQTGEMQILLAHHHRYGQQKTASHL
HHHHCCCCHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCEEEEEEHHHHCCHHHHHHHH
LQSPQPLLYGLIAGFVEVGESLEHAVVREVAEEVGLSLSDIRYVNSQPWPFPSNLMLGFR
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHEEECCCCCCCCCCCCEEEEE
ASYADGDIVIQEDELSHADFFDLSKLPKIPFKGSIAYELIAQIANEQGILL
ECCCCCCEEEECCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MMICAFVLSDETILCRQTPNGWWPLQVELAHSDVSSEQAYQLGQVTLFDSLAPNSWLLSD
CEEEEEEECCCEEEEEECCCCCCEEEEEEECCCCCHHHHHHHCCEEEECCCCCCCCEEEC
VDDTDNANANANANANANANANANANANAVTVQASRAITYDYAIAHNIALPSILDSDELT
CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCEEEEHHHHHHCCCCCCCCCCCCCC
SSDLDSSVISNVENSINTFIPYRQLITHLPIALAAQLSQAIQLLRWQADTQFCSRCAART
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VAAKCGERAMVCDVCRLRQYPRVQPCVITAITRPNPQTGEMQILLAHHHRYGQQKTASHL
HHHHCCCCHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCEEEEEEHHHHCCHHHHHHHH
LQSPQPLLYGLIAGFVEVGESLEHAVVREVAEEVGLSLSDIRYVNSQPWPFPSNLMLGFR
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHEEECCCCCCCCCCCCEEEEE
ASYADGDIVIQEDELSHADFFDLSKLPKIPFKGSIAYELIAQIANEQGILL
ECCCCCCEEEECCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA