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The map label for this gene is occM [H]

Identifier: 93005160

GI number: 93005160

Start: 397326

End: 398051

Strand: Direct

Name: occM [H]

Synonym: Pcryo_0329

Alternate gene names: 93005160

Gene position: 397326-398051 (Clockwise)

Preceding gene: 93005159

Following gene: 93005161

Centisome position: 12.99

GC content: 45.32

Gene sequence:

>726_bases
ATGGATTGGAATTGGCAGGTTATTTTTGATCATATCCCAGACTTACTCGGTGGCGCGGTATTGACCGTACAGCTGGTTTT
GTTCTCGGGTATTATTGGCTTATTTTTTGGTTTGGTTTTGGCGCTGTTACGGCTGTCTAAAAATTGGGTGGTACAGATAT
TCCCTTTTCTATATATCTTCTTTTTCCGTGGCACGCCATTACTGGTACAGATATTTTTGATTTACTATGGTCTTGGGCAG
TTCGAAGCGGTACGTAATTCGTTCCTGTGGGAGCCAGTTCTTAGCCAAGCTTACTGGTGTGCTATCATTGCCTTTACCCT
AAATACCAGTGCTTATTTAGCCGAGATTATCCGCGGTGCTATTCAAAATATTCCGGTCGGTGAGCTTGAAGCTGCCGATG
CAATCGGGATGTCAAAGTGGCAGAAGCTGACCCGTATTACGTTACCGCGTGCCTTTGGTATTGTAATTCCGGCATACAGC
AACGAAGTAATCTTTATGCTAAAGGGCAGTGCACTCGCTTCAACGATTGCTTTGATGGATATCACGGGCGTTGCCCGTAC
TATTAGTGCGCGGACCTATACCTTGATGGAGCTGTTCTTCGCTGCCGGTATCGTTTATCTGTTGTTATCGTGGGTTATTC
TGTTTAGCTTTAGAATGTTTGAAAAGCGCATGAATCGTCACGCAAGCTATGTGCCACCAGATGTGACTACGCATACCGTC
GGCTAA

Upstream 100 bases:

>100_bases
TGGCTTGAATGGCGTGCCAATCCGGCAGCGCGTTATGCTAAAAAGCTCAGCCGTCAAACCACTCACCGTCAATCGACCAT
AGGATAAAGGGGAAGACACT

Downstream 100 bases:

>100_bases
TGATTTGTTATGAATAAAACCTATCATAAACGTTGTGATAAATAGTGCAGTATGTTTCGCTTTTTAAAATATCAATCATC
TGTTGTGAGTGCCTAGTATG

Product: amino acid ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 241; Mature: 241

Protein sequence:

>241_residues
MDWNWQVIFDHIPDLLGGAVLTVQLVLFSGIIGLFFGLVLALLRLSKNWVVQIFPFLYIFFFRGTPLLVQIFLIYYGLGQ
FEAVRNSFLWEPVLSQAYWCAIIAFTLNTSAYLAEIIRGAIQNIPVGELEAADAIGMSKWQKLTRITLPRAFGIVIPAYS
NEVIFMLKGSALASTIALMDITGVARTISARTYTLMELFFAAGIVYLLLSWVILFSFRMFEKRMNRHASYVPPDVTTHTV
G

Sequences:

>Translated_241_residues
MDWNWQVIFDHIPDLLGGAVLTVQLVLFSGIIGLFFGLVLALLRLSKNWVVQIFPFLYIFFFRGTPLLVQIFLIYYGLGQ
FEAVRNSFLWEPVLSQAYWCAIIAFTLNTSAYLAEIIRGAIQNIPVGELEAADAIGMSKWQKLTRITLPRAFGIVIPAYS
NEVIFMLKGSALASTIALMDITGVARTISARTYTLMELFFAAGIVYLLLSWVILFSFRMFEKRMNRHASYVPPDVTTHTV
G
>Mature_241_residues
MDWNWQVIFDHIPDLLGGAVLTVQLVLFSGIIGLFFGLVLALLRLSKNWVVQIFPFLYIFFFRGTPLLVQIFLIYYGLGQ
FEAVRNSFLWEPVLSQAYWCAIIAFTLNTSAYLAEIIRGAIQNIPVGELEAADAIGMSKWQKLTRITLPRAFGIVIPAYS
NEVIFMLKGSALASTIALMDITGVARTISARTYTLMELFFAAGIVYLLLSWVILFSFRMFEKRMNRHASYVPPDVTTHTV
G

Specific function: Component of the octopine active transport system probably consisting of four subunits:Q, M, P and T [H]

COG id: COG4160

COG function: function code E; ABC-type arginine/histidine transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788226, Length=227, Percent_Identity=38.7665198237885, Blast_Score=153, Evalue=8e-39,
Organism=Escherichia coli, GI1788645, Length=219, Percent_Identity=40.6392694063927, Blast_Score=151, Evalue=4e-38,
Organism=Escherichia coli, GI1787086, Length=217, Percent_Identity=39.63133640553, Blast_Score=148, Evalue=4e-37,
Organism=Escherichia coli, GI1787030, Length=225, Percent_Identity=29.7777777777778, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI1786873, Length=209, Percent_Identity=32.5358851674641, Blast_Score=107, Evalue=9e-25,
Organism=Escherichia coli, GI1786874, Length=235, Percent_Identity=27.6595744680851, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI87082239, Length=214, Percent_Identity=31.3084112149533, Blast_Score=85, Evalue=5e-18,
Organism=Escherichia coli, GI1787087, Length=232, Percent_Identity=27.1551724137931, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1788646, Length=217, Percent_Identity=28.110599078341, Blast_Score=77, Evalue=9e-16,
Organism=Escherichia coli, GI48994930, Length=123, Percent_Identity=30.8943089430894, Blast_Score=69, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 27192; Mature: 27192

Theoretical pI: Translated: 8.91; Mature: 8.91

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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C
>Mature Secondary Structure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C

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1655707; 1732218 [H]