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The map label for this gene is ygbK [C]

Identifier: 92115294

GI number: 92115294

Start: 3544512

End: 3545783

Strand: Direct

Name: ygbK [C]

Synonym: Csal_3179

Alternate gene names: 92115294

Gene position: 3544512-3545783 (Clockwise)

Preceding gene: 92115293

Following gene: 92115295

Centisome position: 95.88

GC content: 68.4

Gene sequence:

>1272_bases
ATGACGATGCCCATCATCGGTTGCATTGCCGACGATTTCACCGGCGCCACGGACGTGGCGAGCATGCTGGTCAGTGCCGG
CATGCGCACGCTGCAGACCATCGGCGTCCCGTCGACGGCGCTGGACGATGACGTCGAGGCCGTGGTCGTCGCCCTCAAGT
CGCGCACCCTGCCCGCCGACGAGGCCGTGGCACAGTCTCTCGAGGCGTTGGCGTGGTTGCAGGCCCAGGGCTGCGAACAG
TTCTATTTCAAGTACTGCTCGACGTTCGACTCCACGCCCGCGGGCAACATCGGGCCGGTGACCGACGCGCTGATGACGGC
GCTGGACACCGACTTCACCGTGGCCTGCCCGGCACTGCCCGCCAACCAGCGCACCGTCTACAACGGCTACCTGTTCGCAG
GGGGCGTGCCGCTCAACGAAAGCGGCATGCAGGATCACCCCCTCACGCCCATGACGGATGCCAATCTGGTGCGCGTTCTC
GGCGCCCAGACGCACCAGCGGGTCGATCTGATCGACTACGCCACGCTCAGCGAGGGTGTCGAGGCCGTCGAGGCCCGCAT
GCAGGCACTGCGCTCGGCGGGCGTGGGCATCGCCGTTTGCGACGCCATCGACACGCAACATTTGCATACCCTGGCACGCG
CCTGTCGCCACCTGCCCCTGGTGACCGCCGGCTCCGGGCTGGCCCTGGGGCTGCCCGCCAACCTGACCGATCGCTTGCCT
GCGGCAGGACAAGCCGATGCATTGCCCGCCATCGCCGGGCGAGAGGCCATCTTGAGCGGCAGCTGTTCGCGCGCCACCCT
GGCGCAGCTCGAACATGCCCGCGAGCACTACCCGAGCCATTACCTCGACGCTCTGGCCTTGGCCGATGATTTCGAAGGGG
TCATCGCGGCGGCGCTCGCGCTGGCCGAAGAGCATCTCGATCGTGGCCCGGTGCTGCTGTATGCCAGCGCCTCGCCGGAA
GACGTGCGACGGGCGCAGGAGGTCCTCGGCGTCGCGGAAGCGGGGGCCCTGGTCGAACGCGCCATGGCCGAGATCGCCCA
GTCCCTCGTCGAGCACCATGGCGTACGGCGCTTGCTCGTGGCGGGAGGCGAAACCTCCGGCGCGGTGGTCAACGCGCTTG
GGGTGCAAGGCTTGCGCATCGGCCCGAGCATCGATCCCGGCGTGCCCTGGACCACCACCTTTGGCACGCCGGCGCCGCTC
GCCCTGACCCTCAAGTCGGGCAACTTCGGGGCCCGGGACTTCATGACCAAGGCATGGAGGATGTTGCCATGA

Upstream 100 bases:

>100_bases
AAGGCCATGGCGGCGACGATGACGCTGCCGTGATCAAGACGTTTCCGGGCTTCGGGTTGCCGTCTCTCGCGGCCAACGAT
GACGAGACAGGGGAGGAGGA

Downstream 100 bases:

>100_bases
GCCACATCAGCACCACGATCAACGAAAACCGCCTGCGCGAGGAGATTGCCGAGATCGGCCGTTCCTTCCGGCTACTGGGC
ATGGCGCCGGGCACTTCCGG

Product: Hrp-dependent type III effector protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 423; Mature: 422

Protein sequence:

>423_residues
MTMPIIGCIADDFTGATDVASMLVSAGMRTLQTIGVPSTALDDDVEAVVVALKSRTLPADEAVAQSLEALAWLQAQGCEQ
FYFKYCSTFDSTPAGNIGPVTDALMTALDTDFTVACPALPANQRTVYNGYLFAGGVPLNESGMQDHPLTPMTDANLVRVL
GAQTHQRVDLIDYATLSEGVEAVEARMQALRSAGVGIAVCDAIDTQHLHTLARACRHLPLVTAGSGLALGLPANLTDRLP
AAGQADALPAIAGREAILSGSCSRATLAQLEHAREHYPSHYLDALALADDFEGVIAAALALAEEHLDRGPVLLYASASPE
DVRRAQEVLGVAEAGALVERAMAEIAQSLVEHHGVRRLLVAGGETSGAVVNALGVQGLRIGPSIDPGVPWTTTFGTPAPL
ALTLKSGNFGARDFMTKAWRMLP

Sequences:

>Translated_423_residues
MTMPIIGCIADDFTGATDVASMLVSAGMRTLQTIGVPSTALDDDVEAVVVALKSRTLPADEAVAQSLEALAWLQAQGCEQ
FYFKYCSTFDSTPAGNIGPVTDALMTALDTDFTVACPALPANQRTVYNGYLFAGGVPLNESGMQDHPLTPMTDANLVRVL
GAQTHQRVDLIDYATLSEGVEAVEARMQALRSAGVGIAVCDAIDTQHLHTLARACRHLPLVTAGSGLALGLPANLTDRLP
AAGQADALPAIAGREAILSGSCSRATLAQLEHAREHYPSHYLDALALADDFEGVIAAALALAEEHLDRGPVLLYASASPE
DVRRAQEVLGVAEAGALVERAMAEIAQSLVEHHGVRRLLVAGGETSGAVVNALGVQGLRIGPSIDPGVPWTTTFGTPAPL
ALTLKSGNFGARDFMTKAWRMLP
>Mature_422_residues
TMPIIGCIADDFTGATDVASMLVSAGMRTLQTIGVPSTALDDDVEAVVVALKSRTLPADEAVAQSLEALAWLQAQGCEQF
YFKYCSTFDSTPAGNIGPVTDALMTALDTDFTVACPALPANQRTVYNGYLFAGGVPLNESGMQDHPLTPMTDANLVRVLG
AQTHQRVDLIDYATLSEGVEAVEARMQALRSAGVGIAVCDAIDTQHLHTLARACRHLPLVTAGSGLALGLPANLTDRLPA
AGQADALPAIAGREAILSGSCSRATLAQLEHAREHYPSHYLDALALADDFEGVIAAALALAEEHLDRGPVLLYASASPED
VRRAQEVLGVAEAGALVERAMAEIAQSLVEHHGVRRLLVAGGETSGAVVNALGVQGLRIGPSIDPGVPWTTTFGTPAPLA
LTLKSGNFGARDFMTKAWRMLP

Specific function: Unknown

COG id: COG3395

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ygbK [H]

Homologues:

Organism=Escherichia coli, GI1789093, Length=387, Percent_Identity=47.0284237726098, Blast_Score=319, Evalue=2e-88,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010737 [H]

Pfam domain/function: PF07005 DUF1537 [H]

EC number: NA

Molecular weight: Translated: 44253; Mature: 44122

Theoretical pI: Translated: 4.56; Mature: 4.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTMPIIGCIADDFTGATDVASMLVSAGMRTLQTIGVPSTALDDDVEAVVVALKSRTLPAD
CCCCEEEEHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCHH
EAVAQSLEALAWLQAQGCEQFYFKYCSTFDSTPAGNIGPVTDALMTALDTDFTVACPALP
HHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCEEECCCCC
ANQRTVYNGYLFAGGVPLNESGMQDHPLTPMTDANLVRVLGAQTHQRVDLIDYATLSEGV
CCCCEEECCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHCHHHHHHHHHHHHHH
EAVEARMQALRSAGVGIAVCDAIDTQHLHTLARACRHLPLVTAGSGLALGLPANLTDRLP
HHHHHHHHHHHHCCCCEEEECHHCHHHHHHHHHHHHHCCEEECCCCEEECCCCCCHHCCC
AAGQADALPAIAGREAILSGSCSRATLAQLEHAREHYPSHYLDALALADDFEGVIAAALA
CCCCCCCCHHHHCCHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
LAEEHLDRGPVLLYASASPEDVRRAQEVLGVAEAGALVERAMAEIAQSLVEHHGVRRLLV
HHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE
AGGETSGAVVNALGVQGLRIGPSIDPGVPWTTTFGTPAPLALTLKSGNFGARDFMTKAWR
ECCCCCCHHHHHHCCCCEEECCCCCCCCCCEECCCCCCCEEEEEECCCCCHHHHHHHHHH
MLP
CCC
>Mature Secondary Structure 
TMPIIGCIADDFTGATDVASMLVSAGMRTLQTIGVPSTALDDDVEAVVVALKSRTLPAD
CCCEEEEHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCHH
EAVAQSLEALAWLQAQGCEQFYFKYCSTFDSTPAGNIGPVTDALMTALDTDFTVACPALP
HHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCEEECCCCC
ANQRTVYNGYLFAGGVPLNESGMQDHPLTPMTDANLVRVLGAQTHQRVDLIDYATLSEGV
CCCCEEECCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHCHHHHHHHHHHHHHH
EAVEARMQALRSAGVGIAVCDAIDTQHLHTLARACRHLPLVTAGSGLALGLPANLTDRLP
HHHHHHHHHHHHCCCCEEEECHHCHHHHHHHHHHHHHCCEEECCCCEEECCCCCCHHCCC
AAGQADALPAIAGREAILSGSCSRATLAQLEHAREHYPSHYLDALALADDFEGVIAAALA
CCCCCCCCHHHHCCHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
LAEEHLDRGPVLLYASASPEDVRRAQEVLGVAEAGALVERAMAEIAQSLVEHHGVRRLLV
HHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE
AGGETSGAVVNALGVQGLRIGPSIDPGVPWTTTFGTPAPLALTLKSGNFGARDFMTKAWR
ECCCCCCHHHHHHCCCCEEECCCCCCCCCCEECCCCCCCEEEEEECCCCCHHHHHHHHHH
MLP
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]