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The map label for this gene is patH [H]

Identifier: 92114718

GI number: 92114718

Start: 2911673

End: 2912431

Strand: Direct

Name: patH [H]

Synonym: Csal_2600

Alternate gene names: 92114718

Gene position: 2911673-2912431 (Clockwise)

Preceding gene: 92114712

Following gene: 92114719

Centisome position: 78.77

GC content: 62.32

Gene sequence:

>759_bases
ATGACACTGAGCCAAATCGCCAAACATGCCCTGACCGGCCTTGCCTTGAGCGCGTTCGCCGCGACGGCGCATGCCGACAC
CCTGCGTGTCGGCATGTCGGGCGGTTACTACCCCTTTACCTTCGTCGAGCAGGATGAGCTGAAAGGCTTCGAGGTCGACG
TCATGAACGCCGTGGGTGAGCAGACCGGCGACGAAATCGAATTCGTCACCGCGAGTTTCTCGGGACTGGCGGGCATGCTC
GATTCCGGGCGCATCGATACCATCGCCAACCAGATCACCATCACCCCCGAGCGCCAGGCCAAATACGCCTTCACGCAGCC
CTATGTGTATGACGGGGCACAGGTCGTGGTGCGCGAGGGCAACGACGCCATCCAGGGCGTCGAGGACCTCAAGGGCAAGA
CGGTAGCGGTCAACCTCGGTTCCAACTACGAGCAGTTGCTGCGCGAACTGCCCTACGCGGACGAGATCGACATCAAGACC
TACGACTCCAACATCGAGCAGGATGTCGCCCTGGGGCGCGCCGACGCCTTCGTCATGGACCGGGTCAGCGCTACCCAGGT
AATCAAGGACAAGCCATTGCCGCTGCAGCTCGCCGGCAAACCGTTCTCGCGTATCGAAAACGCCCTGCCCTTCCGTGACA
ACGAAGACGGACGCGCCCTGCGCGACCGCGTCGATGACGCTCTCGCCGAGCTGCGCGAGGACGGCACGCTGACGCAAATC
TCAGAGAAGTGGTTCGGTACCGACATCACCCAACCATGA

Upstream 100 bases:

>100_bases
CGGACTATTTACGCTACACTCACCCTGGTACGACGCGTCACGGTGCCCGACGCGTCATTTCCGGCACTGCGTCCTTCGCC
TTATCCGTTAGGAGCCGACC

Downstream 100 bases:

>100_bases
TGCCATGCTCCACGCCGCGGCCGAGACGATCCTCGGCCGCGTGCTTTCAGGCGACCCGATCATGCAAGCTCTCGACCTCG
ACTACATGCTGGGGCTGCTG

Product: extracellular solute-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 252; Mature: 251

Protein sequence:

>252_residues
MTLSQIAKHALTGLALSAFAATAHADTLRVGMSGGYYPFTFVEQDELKGFEVDVMNAVGEQTGDEIEFVTASFSGLAGML
DSGRIDTIANQITITPERQAKYAFTQPYVYDGAQVVVREGNDAIQGVEDLKGKTVAVNLGSNYEQLLRELPYADEIDIKT
YDSNIEQDVALGRADAFVMDRVSATQVIKDKPLPLQLAGKPFSRIENALPFRDNEDGRALRDRVDDALAELREDGTLTQI
SEKWFGTDITQP

Sequences:

>Translated_252_residues
MTLSQIAKHALTGLALSAFAATAHADTLRVGMSGGYYPFTFVEQDELKGFEVDVMNAVGEQTGDEIEFVTASFSGLAGML
DSGRIDTIANQITITPERQAKYAFTQPYVYDGAQVVVREGNDAIQGVEDLKGKTVAVNLGSNYEQLLRELPYADEIDIKT
YDSNIEQDVALGRADAFVMDRVSATQVIKDKPLPLQLAGKPFSRIENALPFRDNEDGRALRDRVDDALAELREDGTLTQI
SEKWFGTDITQP
>Mature_251_residues
TLSQIAKHALTGLALSAFAATAHADTLRVGMSGGYYPFTFVEQDELKGFEVDVMNAVGEQTGDEIEFVTASFSGLAGMLD
SGRIDTIANQITITPERQAKYAFTQPYVYDGAQVVVREGNDAIQGVEDLKGKTVAVNLGSNYEQLLRELPYADEIDIKTY
DSNIEQDVALGRADAFVMDRVSATQVIKDKPLPLQLAGKPFSRIENALPFRDNEDGRALRDRVDDALAELREDGTLTQIS
EKWFGTDITQP

Specific function: Probably part of a binding-protein-dependent transport system for an amino acid [H]

COG id: COG0834

COG function: function code ET; ABC-type amino acid transport/signal transduction systems, periplasmic component/domain

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 3 family [H]

Homologues:

Organism=Escherichia coli, GI1788228, Length=271, Percent_Identity=39.1143911439114, Blast_Score=177, Evalue=6e-46,
Organism=Escherichia coli, GI1787031, Length=256, Percent_Identity=31.640625, Blast_Score=105, Evalue=4e-24,
Organism=Escherichia coli, GI1787085, Length=238, Percent_Identity=28.9915966386555, Blast_Score=97, Evalue=8e-22,
Organism=Escherichia coli, GI1788649, Length=258, Percent_Identity=28.2945736434109, Blast_Score=94, Evalue=6e-21,
Organism=Escherichia coli, GI1788648, Length=235, Percent_Identity=30.6382978723404, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI1787088, Length=240, Percent_Identity=28.3333333333333, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI1786876, Length=247, Percent_Identity=23.8866396761134, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: 1920 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 1060 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 80 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001638
- InterPro:   IPR018313 [H]

Pfam domain/function: PF00497 SBP_bac_3 [H]

EC number: NA

Molecular weight: Translated: 27619; Mature: 27488

Theoretical pI: Translated: 4.19; Mature: 4.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLSQIAKHALTGLALSAFAATAHADTLRVGMSGGYYPFTFVEQDELKGFEVDVMNAVGE
CCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCEEEEEHHHCCCCEEHHHHHHCC
QTGDEIEFVTASFSGLAGMLDSGRIDTIANQITITPERQAKYAFTQPYVYDGAQVVVREG
CCCCCEEEEEECHHHHHHHHCCCCCHHHHCEEEECCCCCCCEEECCCEEECCCEEEEECC
NDAIQGVEDLKGKTVAVNLGSNYEQLLRELPYADEIDIKTYDSNIEQDVALGRADAFVMD
CHHHHHHHHCCCCEEEEECCCCHHHHHHHCCCCCCCEEEECCCCCHHHHHHCCHHHHHHH
RVSATQVIKDKPLPLQLAGKPFSRIENALPFRDNEDGRALRDRVDDALAELREDGTLTQI
HHHHHHHHHCCCCCEEECCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHH
SEKWFGTDITQP
HHHHCCCCCCCC
>Mature Secondary Structure 
TLSQIAKHALTGLALSAFAATAHADTLRVGMSGGYYPFTFVEQDELKGFEVDVMNAVGE
CHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCEEEEEHHHCCCCEEHHHHHHCC
QTGDEIEFVTASFSGLAGMLDSGRIDTIANQITITPERQAKYAFTQPYVYDGAQVVVREG
CCCCCEEEEEECHHHHHHHHCCCCCHHHHCEEEECCCCCCCEEECCCEEECCCEEEEECC
NDAIQGVEDLKGKTVAVNLGSNYEQLLRELPYADEIDIKTYDSNIEQDVALGRADAFVMD
CHHHHHHHHCCCCEEEEECCCCHHHHHHHCCCCCCCEEEECCCCCHHHHHHCCHHHHHHH
RVSATQVIKDKPLPLQLAGKPFSRIENALPFRDNEDGRALRDRVDDALAELREDGTLTQI
HHHHHHHHHCCCCCEEECCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHH
SEKWFGTDITQP
HHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA