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The map label for this gene is patM [H]

Identifier: 92114719

GI number: 92114719

Start: 2912436

End: 2913167

Strand: Direct

Name: patM [H]

Synonym: Csal_2601

Alternate gene names: 92114719

Gene position: 2912436-2913167 (Clockwise)

Preceding gene: 92114718

Following gene: 92114720

Centisome position: 78.79

GC content: 62.98

Gene sequence:

>732_bases
ATGCTCCACGCCGCGGCCGAGACGATCCTCGGCCGCGTGCTTTCAGGCGACCCGATCATGCAAGCTCTCGACCTCGACTA
CATGCTGGGGCTGCTGCCCATCCTGCTGAGCTACCTGCCGTTAACGCTGGAAATGGCCGCTGCCGGAATGGTCGCAGCGC
TGGTACTCGCCTGTCTGCTGGCCATCGTGCGCGTGCAGCGCACGCCGGGACTCAACGCCCTGGCCATGCTGTTCATCTCC
TTCTTTCGCGGTACACCGCTGCTGGTGCAGCTGTTCCTGTTCTATTACGGCTTGCCGCAGCTGTTGACGTTCCTCGTCGC
CATCAACGGCATCACCGCCACCATCCTCGGGCTGACCCTGCACTTCTCGGCCTACATGGCGGAATCGATCCGCGCCGCCA
TCGTCGGCGTCGACCGCAGCCAGACCGAGGCGGCGCTGTCCATCGGCATGACCCAGGGGCAGCTCATGCGACGCATCGTG
CTTCCCCAGGCGACGCGCGTGGCCACACCCACGCTGATGAACTATTTCATCGACATGATCAAGGCCACGTCCCTGGCATT
CACGCTGGGCGTCACGGAGCTGATGGGCGCGACGCAGAAAGAGGCGGCAGGCAGCTTCCTCTATTTCGAGGCGTTCCTGA
TGGTGGCCGTCATCTACTGGGTGGTGGTGGAACTCTTGTCCTGGCTGCAGCGGCGGATGGAAAAACGTCTCAATCGGGCC
TATCAACGATGA

Upstream 100 bases:

>100_bases
GACCGCGTCGATGACGCTCTCGCCGAGCTGCGCGAGGACGGCACGCTGACGCAAATCTCAGAGAAGTGGTTCGGTACCGA
CATCACCCAACCATGATGCC

Downstream 100 bases:

>100_bases
TCGCACTCAACGGCATTACCAAGCGCTTCGGCGCGCATACCGTCTTCGAGAACATCGACCTCGAGCTGGAACGGGGCGAG
ATCATCGTCATCATCGGCCC

Product: amino acid ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 243; Mature: 243

Protein sequence:

>243_residues
MLHAAAETILGRVLSGDPIMQALDLDYMLGLLPILLSYLPLTLEMAAAGMVAALVLACLLAIVRVQRTPGLNALAMLFIS
FFRGTPLLVQLFLFYYGLPQLLTFLVAINGITATILGLTLHFSAYMAESIRAAIVGVDRSQTEAALSIGMTQGQLMRRIV
LPQATRVATPTLMNYFIDMIKATSLAFTLGVTELMGATQKEAAGSFLYFEAFLMVAVIYWVVVELLSWLQRRMEKRLNRA
YQR

Sequences:

>Translated_243_residues
MLHAAAETILGRVLSGDPIMQALDLDYMLGLLPILLSYLPLTLEMAAAGMVAALVLACLLAIVRVQRTPGLNALAMLFIS
FFRGTPLLVQLFLFYYGLPQLLTFLVAINGITATILGLTLHFSAYMAESIRAAIVGVDRSQTEAALSIGMTQGQLMRRIV
LPQATRVATPTLMNYFIDMIKATSLAFTLGVTELMGATQKEAAGSFLYFEAFLMVAVIYWVVVELLSWLQRRMEKRLNRA
YQR
>Mature_243_residues
MLHAAAETILGRVLSGDPIMQALDLDYMLGLLPILLSYLPLTLEMAAAGMVAALVLACLLAIVRVQRTPGLNALAMLFIS
FFRGTPLLVQLFLFYYGLPQLLTFLVAINGITATILGLTLHFSAYMAESIRAAIVGVDRSQTEAALSIGMTQGQLMRRIV
LPQATRVATPTLMNYFIDMIKATSLAFTLGVTELMGATQKEAAGSFLYFEAFLMVAVIYWVVVELLSWLQRRMEKRLNRA
YQR

Specific function: Probably part of a binding-protein-dependent transport system for an amino acid. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0765

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788226, Length=208, Percent_Identity=45.1923076923077, Blast_Score=168, Evalue=3e-43,
Organism=Escherichia coli, GI1787030, Length=215, Percent_Identity=32.5581395348837, Blast_Score=115, Evalue=3e-27,
Organism=Escherichia coli, GI1788645, Length=203, Percent_Identity=37.9310344827586, Blast_Score=105, Evalue=2e-24,
Organism=Escherichia coli, GI87082239, Length=203, Percent_Identity=32.0197044334975, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1786873, Length=224, Percent_Identity=29.9107142857143, Blast_Score=88, Evalue=4e-19,
Organism=Escherichia coli, GI1787086, Length=217, Percent_Identity=31.3364055299539, Blast_Score=84, Evalue=6e-18,
Organism=Escherichia coli, GI1786874, Length=189, Percent_Identity=27.5132275132275, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1788646, Length=227, Percent_Identity=29.0748898678414, Blast_Score=83, Evalue=1e-17,
Organism=Escherichia coli, GI1787087, Length=226, Percent_Identity=23.8938053097345, Blast_Score=70, Evalue=9e-14,
Organism=Escherichia coli, GI48994930, Length=121, Percent_Identity=35.5371900826446, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 26802; Mature: 26802

Theoretical pI: Translated: 9.29; Mature: 9.29

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
5.8 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
5.8 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HCC
>Mature Secondary Structure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HCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA