Click here to switch to the map view.

The map label for this gene is sdhD [H]

Identifier: 92113340

GI number: 92113340

Start: 1389070

End: 1389417

Strand: Direct

Name: sdhD [H]

Synonym: Csal_1214

Alternate gene names: 92113340

Gene position: 1389070-1389417 (Clockwise)

Preceding gene: 92113339

Following gene: 92113341

Centisome position: 37.58

GC content: 58.62

Gene sequence:

>348_bases
ATGGTAACCAACATCACGAATCTCGGCCGTAGTGGCCTGTCCGATTGGCTGATCCAGCGCATTTCGGCCGTCATCCTGGC
CGTCTATGCTCTGTTCATGGTCCTGTATCTCCTGTTCCATCCGGGGCTCGATTACGCCACCTGGAGCGGGCTCTTCTCGC
AGACCTGGATGCGGGTGTTCTCCTTGTTGGCCTTCATCTCCATCGCGGCGCACGCCTGGGTCGGTCTGTGGACCGTGTCG
ACCGACTATCTCAAACAGACGGGCGTGCGTTTCGCGTTTCAAGCGGTCGTCATGCTGGCCATCTTCGTTTTTCTGGTGTG
GGGCGTTCAAGTCCTCTGGGGAGCCTAA

Upstream 100 bases:

>100_bases
TGGATGCCGGGATCGGCGTGGATCTCGAAGGTGGGTATCGCAAGGCACAGATCACCGTCGTGATCAGTGCCATCTTGGTG
GTTCTGGCAGGAGTCTGGGT

Downstream 100 bases:

>100_bases
TCCATGTCCAATATGCGTAGCCTGACATTCGACGCAATCATCATCGGCGGTGGTGGCTCCGGCCTGCGCGCCGCGCTCGA
GCTGGCCAAGTCGGGCAAGA

Product: succinate dehydrogenase subunit D

Products: fumarate; reduced acceptor

Alternate protein names: NA

Number of amino acids: Translated: 115; Mature: 115

Protein sequence:

>115_residues
MVTNITNLGRSGLSDWLIQRISAVILAVYALFMVLYLLFHPGLDYATWSGLFSQTWMRVFSLLAFISIAAHAWVGLWTVS
TDYLKQTGVRFAFQAVVMLAIFVFLVWGVQVLWGA

Sequences:

>Translated_115_residues
MVTNITNLGRSGLSDWLIQRISAVILAVYALFMVLYLLFHPGLDYATWSGLFSQTWMRVFSLLAFISIAAHAWVGLWTVS
TDYLKQTGVRFAFQAVVMLAIFVFLVWGVQVLWGA
>Mature_115_residues
MVTNITNLGRSGLSDWLIQRISAVILAVYALFMVLYLLFHPGLDYATWSGLFSQTWMRVFSLLAFISIAAHAWVGLWTVS
TDYLKQTGVRFAFQAVVMLAIFVFLVWGVQVLWGA

Specific function: Membrane-anchoring subunit of succinate dehydrogenase (SDH) [H]

COG id: COG2142

COG function: function code C; Succinate dehydrogenase, hydrophobic anchor subunit

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786941, Length=114, Percent_Identity=39.4736842105263, Blast_Score=85, Evalue=1e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014312
- InterPro:   IPR000701 [H]

Pfam domain/function: PF01127 Sdh_cyt [H]

EC number: 1.3.99.1

Molecular weight: Translated: 12980; Mature: 12980

Theoretical pI: Translated: 9.63; Mature: 9.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVTNITNLGRSGLSDWLIQRISAVILAVYALFMVLYLLFHPGLDYATWSGLFSQTWMRVF
CCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
SLLAFISIAAHAWVGLWTVSTDYLKQTGVRFAFQAVVMLAIFVFLVWGVQVLWGA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MVTNITNLGRSGLSDWLIQRISAVILAVYALFMVLYLLFHPGLDYATWSGLFSQTWMRVF
CCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
SLLAFISIAAHAWVGLWTVSTDYLKQTGVRFAFQAVVMLAIFVFLVWGVQVLWGA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: succinate; acceptor

Specific reaction: succinate + acceptor = fumarate + reduced acceptor

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7698664; 12704232 [H]