Click here to switch to the map view.

The map label for this gene is sdhC [H]

Identifier: 92113339

GI number: 92113339

Start: 1388699

End: 1389076

Strand: Direct

Name: sdhC [H]

Synonym: Csal_1213

Alternate gene names: 92113339

Gene position: 1388699-1389076 (Clockwise)

Preceding gene: 92113337

Following gene: 92113340

Centisome position: 37.57

GC content: 55.56

Gene sequence:

>378_bases
GTGAATAGCAAAAGACCCGTAAACCTAGACCTGACGACGATAAAGTTCCCACTTCCCGCATTGACCTCCATTGCCCACCG
GATCACCGGTATCATCCTGTTCATAGGACTGATCTTCGGTTTCTGGGCCCTTGACGTGTCACTCTCGTCTCCCGAAGGCT
TCGAAGCCGTACGTGACACCCTCGCCAACAACGTTCTCGCCAAACTGATCGCCTGGGGCCTGCTCTCGGCGTTGGGCTTC
CATTTCGTGGCAGGTATCAAGCACCTGTTGATGGATGCCGGGATCGGCGTGGATCTCGAAGGTGGGTATCGCAAGGCACA
GATCACCGTCGTGATCAGTGCCATCTTGGTGGTTCTGGCAGGAGTCTGGGTATGGTAA

Upstream 100 bases:

>100_bases
GCTTGGTCATGTAAGCCCTCGACCAAGGCCTTCCCCTCAAACCACCGCCCGCACCGGGTACAGCCCCAGCCGCTGGCGGG
CCAAGAGAGTGTGATGAGCC

Downstream 100 bases:

>100_bases
CCAACATCACGAATCTCGGCCGTAGTGGCCTGTCCGATTGGCTGATCCAGCGCATTTCGGCCGTCATCCTGGCCGTCTAT
GCTCTGTTCATGGTCCTGTA

Product: succinate dehydrogenase subunit C

Products: fumarate; reduced acceptor

Alternate protein names: Cytochrome b-556 [H]

Number of amino acids: Translated: 125; Mature: 125

Protein sequence:

>125_residues
MNSKRPVNLDLTTIKFPLPALTSIAHRITGIILFIGLIFGFWALDVSLSSPEGFEAVRDTLANNVLAKLIAWGLLSALGF
HFVAGIKHLLMDAGIGVDLEGGYRKAQITVVISAILVVLAGVWVW

Sequences:

>Translated_125_residues
MNSKRPVNLDLTTIKFPLPALTSIAHRITGIILFIGLIFGFWALDVSLSSPEGFEAVRDTLANNVLAKLIAWGLLSALGF
HFVAGIKHLLMDAGIGVDLEGGYRKAQITVVISAILVVLAGVWVW
>Mature_125_residues
MNSKRPVNLDLTTIKFPLPALTSIAHRITGIILFIGLIFGFWALDVSLSSPEGFEAVRDTLANNVLAKLIAWGLLSALGF
HFVAGIKHLLMDAGIGVDLEGGYRKAQITVVISAILVVLAGVWVW

Specific function: Membrane-anchoring subunit of succinate dehydrogenase (SDH) [H]

COG id: COG2009

COG function: function code C; Succinate dehydrogenase/fumarate reductase, cytochrome b subunit

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome b560 family [H]

Homologues:

Organism=Escherichia coli, GI1786940, Length=126, Percent_Identity=46.8253968253968, Blast_Score=119, Evalue=7e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018495
- InterPro:   IPR014314
- InterPro:   IPR014361
- InterPro:   IPR000701 [H]

Pfam domain/function: PF01127 Sdh_cyt [H]

EC number: 1.3.99.1

Molecular weight: Translated: 13467; Mature: 13467

Theoretical pI: Translated: 9.16; Mature: 9.16

Prosite motif: PS01000 SDH_CYT_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSKRPVNLDLTTIKFPLPALTSIAHRITGIILFIGLIFGFWALDVSLSSPEGFEAVRDT
CCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
LANNVLAKLIAWGLLSALGFHFVAGIKHLLMDAGIGVDLEGGYRKAQITVVISAILVVLA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
GVWVW
HHHCC
>Mature Secondary Structure
MNSKRPVNLDLTTIKFPLPALTSIAHRITGIILFIGLIFGFWALDVSLSSPEGFEAVRDT
CCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
LANNVLAKLIAWGLLSALGFHFVAGIKHLLMDAGIGVDLEGGYRKAQITVVISAILVVLA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
GVWVW
HHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: succinate; acceptor

Specific reaction: succinate + acceptor = fumarate + reduced acceptor

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]