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The map label for this gene is rpoE [H]

Identifier: 91783361

GI number: 91783361

Start: 2206263

End: 2207000

Strand: Direct

Name: rpoE [H]

Synonym: Bxe_A2458

Alternate gene names: 91783361

Gene position: 2206263-2207000 (Clockwise)

Preceding gene: 91783360

Following gene: 91783362

Centisome position: 45.06

GC content: 69.65

Gene sequence:

>738_bases
GTGGTCCAGACCGATTCTGAACCTGTTCGCGCGCACGGCGAGACCGACGCGGCGAGGAGCCGGCGCTTTCAGCAGATGGC
GCTGCCGCACCTCGACGCCGCGTACAACCTCGCGCGCTGGTTGTGCGGCAACGCCAATGATGCCGACGACGTCGTGCAGG
AAGCCTTCATGCGCGCGTTTCGCTTCTTCGACACCTTTCGCGGCGACTCGGCCCGGCCGTGGCTGCTGGCGATCGTGCGC
CGCACCTGGTACACGGAATGGCGGCGGCGGGCCTCGTCGCACGAAACGGTGGAGTTCGACGACACGATGGACGACGCGTC
CTTCGACGGCTGGACGGTGGGCGGCGCCGACCCGCAGGCGCTCCTGATCCGCGACGAGGATACGAAGCTGGTACACGAGG
CGCTCGCGCAGTTGCCGGTCGAATATCGGGAAGTGCTGATGCTGAGGGAACTGGAGGAAATGGGTTATCGGGAGATCGCG
CTGGTGGCGGACGTGCCGATCGGCACGGTGATGTCCCGGCTCGCGCGGGGACGCCGCAAGCTGGCCGCGGTGCTGACGGA
GAAGCAGGGCGGCGCGACGGCGCCGCCCAGACCGTCGATGTGCGCGGCGGCGCCCGGCGCAAGCAAATCGGCCACGGCGA
GCGTGACGCCCCTGCGGGCGTCCGCCAACGGCCGGCCACTCAACACGCCGGGCGGCAGCGCCGCCGGCAACGCTCAGGAG
ACGCCAGATGGACTGTAA

Upstream 100 bases:

>100_bases
CGCGGTGTCGGGAATAAACTCGGCGAATGCCCGGTTATGCGCTGTAGAGAGCGTCACGACGAGCTCCACCGCATAGTCCG
CAATGCCTTGGAGGGCCGAG

Downstream 100 bases:

>100_bases
CGAAGCGCGGCCGCTCCTCGATGCGAACGCCGATCACGAATTGCCCGCGCCGGATGCCCGGCGCGTCCAGCAGCACATCG
AGAGCTGCGCCGCCTGCCGG

Product: RNA polymerase sigma factor

Products: NA

Alternate protein names: Sigma-24 [H]

Number of amino acids: Translated: 245; Mature: 245

Protein sequence:

>245_residues
MVQTDSEPVRAHGETDAARSRRFQQMALPHLDAAYNLARWLCGNANDADDVVQEAFMRAFRFFDTFRGDSARPWLLAIVR
RTWYTEWRRRASSHETVEFDDTMDDASFDGWTVGGADPQALLIRDEDTKLVHEALAQLPVEYREVLMLRELEEMGYREIA
LVADVPIGTVMSRLARGRRKLAAVLTEKQGGATAPPRPSMCAAAPGASKSATASVTPLRASANGRPLNTPGGSAAGNAQE
TPDGL

Sequences:

>Translated_245_residues
MVQTDSEPVRAHGETDAARSRRFQQMALPHLDAAYNLARWLCGNANDADDVVQEAFMRAFRFFDTFRGDSARPWLLAIVR
RTWYTEWRRRASSHETVEFDDTMDDASFDGWTVGGADPQALLIRDEDTKLVHEALAQLPVEYREVLMLRELEEMGYREIA
LVADVPIGTVMSRLARGRRKLAAVLTEKQGGATAPPRPSMCAAAPGASKSATASVTPLRASANGRPLNTPGGSAAGNAQE
TPDGL
>Mature_245_residues
MVQTDSEPVRAHGETDAARSRRFQQMALPHLDAAYNLARWLCGNANDADDVVQEAFMRAFRFFDTFRGDSARPWLLAIVR
RTWYTEWRRRASSHETVEFDDTMDDASFDGWTVGGADPQALLIRDEDTKLVHEALAQLPVEYREVLMLRELEEMGYREIA
LVADVPIGTVMSRLARGRRKLAAVLTEKQGGATAPPRPSMCAAAPGASKSATASVTPLRASANGRPLNTPGGSAAGNAQE
TPDGL

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in heat shock and oxidative stress response; it is believed to control protein processing

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788926, Length=146, Percent_Identity=36.3013698630137, Blast_Score=82, Evalue=3e-17,

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014293
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 26873; Mature: 26873

Theoretical pI: Translated: 5.41; Mature: 5.41

Prosite motif: PS01063 SIGMA70_ECF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVQTDSEPVRAHGETDAARSRRFQQMALPHLDAAYNLARWLCGNANDADDVVQEAFMRAF
CCCCCCCCHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
RFFDTFRGDSARPWLLAIVRRTWYTEWRRRASSHETVEFDDTMDDASFDGWTVGGADPQA
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCEEECCCCCCE
LLIRDEDTKLVHEALAQLPVEYREVLMLRELEEMGYREIALVADVPIGTVMSRLARGRRK
EEEECCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHH
LAAVLTEKQGGATAPPRPSMCAAAPGASKSATASVTPLRASANGRPLNTPGGSAAGNAQE
HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCC
TPDGL
CCCCC
>Mature Secondary Structure
MVQTDSEPVRAHGETDAARSRRFQQMALPHLDAAYNLARWLCGNANDADDVVQEAFMRAF
CCCCCCCCHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
RFFDTFRGDSARPWLLAIVRRTWYTEWRRRASSHETVEFDDTMDDASFDGWTVGGADPQA
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCEEECCCCCCE
LLIRDEDTKLVHEALAQLPVEYREVLMLRELEEMGYREIALVADVPIGTVMSRLARGRRK
EEEECCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHH
LAAVLTEKQGGATAPPRPSMCAAAPGASKSATASVTPLRASANGRPLNTPGGSAAGNAQE
HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCC
TPDGL
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]