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The map label for this gene is yhjC [H]

Identifier: 91782384

GI number: 91782384

Start: 1123190

End: 1124107

Strand: Reverse

Name: yhjC [H]

Synonym: Bxe_A3447

Alternate gene names: 91782384

Gene position: 1124107-1123190 (Counterclockwise)

Preceding gene: 91782385

Following gene: 91782379

Centisome position: 22.96

GC content: 64.05

Gene sequence:

>918_bases
ATGGACCGTTTCGAAGCGATGGAGATATTTACGCGTGTGGTCGAGGCGAACAGCTTCACCAAAGTATCCGAGTCGCTCGA
CCTGCCGCGCGCCAAAGTCAGCCGCACCATCCAGGCGCTGGAGGAACACGTCGGCGTGCGTCTGCTGAACCGTTCGACGC
GCCAGGTCAGCGTCACCGAAGACGGCGCGCTGTTCTACGAGCGCTGCGTGCGCATCCTCGCCGAAGTCGCCGAGGCCGAG
TCGTCGCTGTCGAACAAGCGCGAAAATCCGGCCGGCACGATCCGCGTGGATACGTCCGGCACGCTGGCCCGCGCGCTGCT
GCTGCCCGCGCTCGACGACTTCTACCGGCAATACCCCGAGATCGACGTGCGGCTCGGCCTCGCCGATCGCAACATCGACC
TGATTCAGGACGGCGTGGATTGCGTGATCCGCATGGGCACGCCGGAAGAGTCGAGTCTCGTGGCGCGGCGGATCGGTCAG
GCGCGCATCGTCACATGCGCGTCGCCGGCGTATCTGGAGAAATACGGCGAGCCGACCACGCTCGAAGCGTTGAGCGAACA
TCGCGCGGTCAATTACGTGTCCGCGCGCACGGGCAGAACGTTTCCATTCGAATACGAAGTGGACGGCGAACTCGCCAAGG
TCACGCTGAAAAGCGTGCTGGCGGTAAACGACGGCTCCGTGTACATCGGCGCGGCCGTGCTCGGTCACGGCATCATCCAG
CCGTCGCGCTTCATGGTCTCCGACCTGATCAACCAGGGCGCGCTGAAGGAAATCCTCACCACCTACACGAGCCCCGGCAC
GCCGCTATCGGTGCTCTACGCGCATCGCCGCAATCTGAGTTCGCGGCTGCGCGCGTTCATCGAATGGGTGACCGAGCTGG
CGCGCAACAATCCGGATCTGCATATTGCGGAGCAGTGA

Upstream 100 bases:

>100_bases
GCTGGCAAGCCGCCCATTCTTACCCTTTGGGACAACAATTTTTCCAACCTATACACTTCACTTCGACACCCACTTCCGCC
AATCACCCACAAGGCAAAAC

Downstream 100 bases:

>100_bases
GGCGACGCCGCACCAGGCAAAAGCCCCATGCATTTTGCAATGCATGGGGCTTTTTGAACACAATCCGAACGTTGCGATCA
GGCGATCCGCTCTTCGTTGG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 305; Mature: 305

Protein sequence:

>305_residues
MDRFEAMEIFTRVVEANSFTKVSESLDLPRAKVSRTIQALEEHVGVRLLNRSTRQVSVTEDGALFYERCVRILAEVAEAE
SSLSNKRENPAGTIRVDTSGTLARALLLPALDDFYRQYPEIDVRLGLADRNIDLIQDGVDCVIRMGTPEESSLVARRIGQ
ARIVTCASPAYLEKYGEPTTLEALSEHRAVNYVSARTGRTFPFEYEVDGELAKVTLKSVLAVNDGSVYIGAAVLGHGIIQ
PSRFMVSDLINQGALKEILTTYTSPGTPLSVLYAHRRNLSSRLRAFIEWVTELARNNPDLHIAEQ

Sequences:

>Translated_305_residues
MDRFEAMEIFTRVVEANSFTKVSESLDLPRAKVSRTIQALEEHVGVRLLNRSTRQVSVTEDGALFYERCVRILAEVAEAE
SSLSNKRENPAGTIRVDTSGTLARALLLPALDDFYRQYPEIDVRLGLADRNIDLIQDGVDCVIRMGTPEESSLVARRIGQ
ARIVTCASPAYLEKYGEPTTLEALSEHRAVNYVSARTGRTFPFEYEVDGELAKVTLKSVLAVNDGSVYIGAAVLGHGIIQ
PSRFMVSDLINQGALKEILTTYTSPGTPLSVLYAHRRNLSSRLRAFIEWVTELARNNPDLHIAEQ
>Mature_305_residues
MDRFEAMEIFTRVVEANSFTKVSESLDLPRAKVSRTIQALEEHVGVRLLNRSTRQVSVTEDGALFYERCVRILAEVAEAE
SSLSNKRENPAGTIRVDTSGTLARALLLPALDDFYRQYPEIDVRLGLADRNIDLIQDGVDCVIRMGTPEESSLVARRIGQ
ARIVTCASPAYLEKYGEPTTLEALSEHRAVNYVSARTGRTFPFEYEVDGELAKVTLKSVLAVNDGSVYIGAAVLGHGIIQ
PSRFMVSDLINQGALKEILTTYTSPGTPLSVLYAHRRNLSSRLRAFIEWVTELARNNPDLHIAEQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=299, Percent_Identity=34.4481605351171, Blast_Score=202, Evalue=2e-53,
Organism=Escherichia coli, GI1786401, Length=295, Percent_Identity=35.2542372881356, Blast_Score=176, Evalue=1e-45,
Organism=Escherichia coli, GI1789639, Length=292, Percent_Identity=32.8767123287671, Blast_Score=160, Evalue=1e-40,
Organism=Escherichia coli, GI1789440, Length=296, Percent_Identity=29.0540540540541, Blast_Score=136, Evalue=2e-33,
Organism=Escherichia coli, GI1787128, Length=282, Percent_Identity=28.0141843971631, Blast_Score=133, Evalue=1e-32,
Organism=Escherichia coli, GI1787589, Length=280, Percent_Identity=29.6428571428571, Blast_Score=132, Evalue=2e-32,
Organism=Escherichia coli, GI87081978, Length=298, Percent_Identity=30.8724832214765, Blast_Score=129, Evalue=2e-31,
Organism=Escherichia coli, GI1789173, Length=250, Percent_Identity=26.4, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1788706, Length=179, Percent_Identity=27.3743016759777, Blast_Score=78, Evalue=9e-16,
Organism=Escherichia coli, GI1786448, Length=277, Percent_Identity=24.9097472924188, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1788481, Length=290, Percent_Identity=26.2068965517241, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1787601, Length=116, Percent_Identity=27.5862068965517, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI157672245, Length=116, Percent_Identity=29.3103448275862, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1788748, Length=127, Percent_Identity=30.7086614173228, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33871; Mature: 33871

Theoretical pI: Translated: 5.48; Mature: 5.48

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRFEAMEIFTRVVEANSFTKVSESLDLPRAKVSRTIQALEEHVGVRLLNRSTRQVSVTE
CCHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHEECCCCCEEEECC
DGALFYERCVRILAEVAEAESSLSNKRENPAGTIRVDTSGTLARALLLPALDDFYRQYPE
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHCCC
IDVRLGLADRNIDLIQDGVDCVIRMGTPEESSLVARRIGQARIVTCASPAYLEKYGEPTT
EEEEEECCCCCHHHHHCCCCEEEECCCCCHHHHHHHHCCCEEEEEECCHHHHHHCCCCHH
LEALSEHRAVNYVSARTGRTFPFEYEVDGELAKVTLKSVLAVNDGSVYIGAAVLGHGIIQ
HHHHHHHHHHHEEECCCCCCCCEEEECCCHHHHHHHHHHHEECCCCEEEHHHHHHCCCCC
PSRFMVSDLINQGALKEILTTYTSPGTPLSVLYAHRRNLSSRLRAFIEWVTELARNNPDL
CHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCE
HIAEQ
EEECC
>Mature Secondary Structure
MDRFEAMEIFTRVVEANSFTKVSESLDLPRAKVSRTIQALEEHVGVRLLNRSTRQVSVTE
CCHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHEECCCCCEEEECC
DGALFYERCVRILAEVAEAESSLSNKRENPAGTIRVDTSGTLARALLLPALDDFYRQYPE
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHCCC
IDVRLGLADRNIDLIQDGVDCVIRMGTPEESSLVARRIGQARIVTCASPAYLEKYGEPTT
EEEEEECCCCCHHHHHCCCCEEEECCCCCHHHHHHHHCCCEEEEEECCHHHHHHCCCCHH
LEALSEHRAVNYVSARTGRTFPFEYEVDGELAKVTLKSVLAVNDGSVYIGAAVLGHGIIQ
HHHHHHHHHHHEEECCCCCCCCEEEECCCHHHHHHHHHHHEECCCCEEEHHHHHHCCCCC
PSRFMVSDLINQGALKEILTTYTSPGTPLSVLYAHRRNLSSRLRAFIEWVTELARNNPDL
CHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCE
HIAEQ
EEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]