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The map label for this gene is yiaD [H]

Identifier: 91782349

GI number: 91782349

Start: 1084025

End: 1084678

Strand: Reverse

Name: yiaD [H]

Synonym: Bxe_A3482

Alternate gene names: 91782349

Gene position: 1084678-1084025 (Counterclockwise)

Preceding gene: 91782351

Following gene: 91782348

Centisome position: 22.16

GC content: 67.13

Gene sequence:

>654_bases
ATGAATGCAAAAATCATGACTCGCCTGGCCGTCTTTGCCGTTGCCGGTTCGCTGCTGGCAGGTTGCGCCACCCAACAGGG
CACCAACACGGCCGTAGGCACGGGCGTCGGTGCCGGCACCGGCGCGGCGCTGGGCGCCATCTTCGGCGGCGGCAAGGGCG
CGGCGATCGGCGCGGGCGTCGGCGCGGCGGTGGGCGGCATCACCGGCTATAACTGGCAGGCCATTCACAACAAGCTGTCG
GGCGCCACCAAGGGCACCGGCACGCAGATCACCGAACAGCCGGACGGCTCGCTCAAGCTGAACATTCCGAGCTCGGTCAC
GTTCGACACCAACAGCTACGCGGTCAAGCCGTCGTTCGCGCCAGTGCTGGACCAGCTGGCGCAGACCATGCAGCAGAATC
CGGAGCTGATCGCTCAAGTGGTCGGCCACACGGACAGCACGGGCCAGCCGGCGTACAACCAGACGCTGTCGGTCAACCGT
GCGGAAAGCGTGACCGGCTACCTGGGCCAGCGCGGCGTCGCGCCGCAGCGTCTGTCGGCACAAGGCATGGGCCAAACCCA
GCCGATCGCCGACAACAATACCGAAGCCGGCCGCGCCGCGAACCGTCGCGTAGAAATCTATCTGCGCGCCACGGCTCAGC
ACGCCACGCAATAA

Upstream 100 bases:

>100_bases
TATCGAGCCGGCGGCTTTACTGCCGTCATGTTCACCGTATAGATTTGTCGCTTGTCGCCGCCTTATCTGCCTGACTAGCT
TCACTCAAGAGGACTCAAAA

Downstream 100 bases:

>100_bases
AGACAGAACCTGGGGAGATTGGGAAAGCCGGTCGCCGGGGCTGCATCGCCGGCGACCGTGACGCTCCAGAAAACCGTGAA
AGGCGGAGAACTGGAATCTC

Product: OmpA/MotB family outer membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 217; Mature: 217

Protein sequence:

>217_residues
MNAKIMTRLAVFAVAGSLLAGCATQQGTNTAVGTGVGAGTGAALGAIFGGGKGAAIGAGVGAAVGGITGYNWQAIHNKLS
GATKGTGTQITEQPDGSLKLNIPSSVTFDTNSYAVKPSFAPVLDQLAQTMQQNPELIAQVVGHTDSTGQPAYNQTLSVNR
AESVTGYLGQRGVAPQRLSAQGMGQTQPIADNNTEAGRAANRRVEIYLRATAQHATQ

Sequences:

>Translated_217_residues
MNAKIMTRLAVFAVAGSLLAGCATQQGTNTAVGTGVGAGTGAALGAIFGGGKGAAIGAGVGAAVGGITGYNWQAIHNKLS
GATKGTGTQITEQPDGSLKLNIPSSVTFDTNSYAVKPSFAPVLDQLAQTMQQNPELIAQVVGHTDSTGQPAYNQTLSVNR
AESVTGYLGQRGVAPQRLSAQGMGQTQPIADNNTEAGRAANRRVEIYLRATAQHATQ
>Mature_217_residues
MNAKIMTRLAVFAVAGSLLAGCATQQGTNTAVGTGVGAGTGAALGAIFGGGKGAAIGAGVGAAVGGITGYNWQAIHNKLS
GATKGTGTQITEQPDGSLKLNIPSSVTFDTNSYAVKPSFAPVLDQLAQTMQQNPELIAQVVGHTDSTGQPAYNQTLSVNR
AESVTGYLGQRGVAPQRLSAQGMGQTQPIADNNTEAGRAANRRVEIYLRATAQHATQ

Specific function: Unknown

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential). Cell inner membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI48994946, Length=211, Percent_Identity=39.3364928909953, Blast_Score=107, Evalue=5e-25,
Organism=Escherichia coli, GI1787191, Length=129, Percent_Identity=35.6589147286822, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1786962, Length=98, Percent_Identity=35.7142857142857, Blast_Score=71, Evalue=6e-14,
Organism=Escherichia coli, GI1788957, Length=114, Percent_Identity=33.3333333333333, Blast_Score=65, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001035
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 21968; Mature: 21968

Theoretical pI: Translated: 9.77; Mature: 9.77

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNAKIMTRLAVFAVAGSLLAGCATQQGTNTAVGTGVGAGTGAALGAIFGGGKGAAIGAGV
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCEECCCH
GAAVGGITGYNWQAIHNKLSGATKGTGTQITEQPDGSLKLNIPSSVTFDTNSYAVKPSFA
HHHHCCCCCCCHHHHHHHHCCCCCCCCCEECCCCCCCEEEECCCCEEECCCCEEECCCHH
PVLDQLAQTMQQNPELIAQVVGHTDSTGQPAYNQTLSVNRAESVTGYLGQRGVAPQRLSA
HHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHH
QGMGQTQPIADNNTEAGRAANRRVEIYLRATAQHATQ
CCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCC
>Mature Secondary Structure
MNAKIMTRLAVFAVAGSLLAGCATQQGTNTAVGTGVGAGTGAALGAIFGGGKGAAIGAGV
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCEECCCH
GAAVGGITGYNWQAIHNKLSGATKGTGTQITEQPDGSLKLNIPSSVTFDTNSYAVKPSFA
HHHHCCCCCCCHHHHHHHHCCCCCCCCCEECCCCCCCEEEECCCCEEECCCCEEECCCHH
PVLDQLAQTMQQNPELIAQVVGHTDSTGQPAYNQTLSVNRAESVTGYLGQRGVAPQRLSA
HHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHH
QGMGQTQPIADNNTEAGRAANRRVEIYLRATAQHATQ
CCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503; 2180922 [H]