| Definition | Burkholderia xenovorans LB400 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_007951 |
| Length | 4,895,836 |
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The map label for this gene is kstD [H]
Identifier: 91782228
GI number: 91782228
Start: 946813
End: 948603
Strand: Direct
Name: kstD [H]
Synonym: Bxe_A3607
Alternate gene names: 91782228
Gene position: 946813-948603 (Clockwise)
Preceding gene: 91782227
Following gene: 91782229
Centisome position: 19.34
GC content: 62.26
Gene sequence:
>1791_bases ATGGGGAAAGGTGCTCAGGTGGTCAACGAATTCGATGTGATCGTGGTGGGCGCGGGTGCCGGCGGTATGGCCGCGGCGGT CAGCGCGGCGAAGAACGGGGCGAGTGTGATTGTCATCGAAAAGGACAAGGTACTCGGCGGGACGACTGCGCGCTCGGGCG GCGTGCTGTGGATTCCGTGTCATCCGTTCTCGCAGCAGAGCCCTGCCGAAGATTCGATCGAGAACGCCACGACCTACCTT CGTCATGAGGCGGGGCGATACTTCAATGCGGAGAAGGTGCAGGCGTTTCTTCACAACGGGCCGCGCATGGTCGACTGGTT CCAGCGCGAAACCGACGTGAAGTTCGTCTCCGTGCCGGAGTTCTCGGACTACCATCCGGATGCGGCCGGCGGTCTGCCCG GCGGCCGTTCGATCCTTGCCGCGCCGTTCGACGGCAGGGAGTTAGGCAAAAAGATCGAATGGCTGCGCCCGCCGCTGCGC GAGATTACCTTCGTGGGCATGATGTTCAATGCAAGCAAGGAGATCAGCCAGTTCTTCAACGTGACACGTTCGCTGGCCTC CGCATGGTATGTGACGAAACGCCTTGTTACGCACGCGCGCGAAATGCTGACATACGGACGCGCCATGCGCCTGACCAACG GCAATGCACTCGCTGCGCGTCTCGCGAAAAGCGCCTTCGACTGCGACATTCCATTTCGCCTCGACACGCGTGTCGAACGT CTGCTGATGGAAGGCAGGCGCGTGGCAGGCGTCGCGGTAAATTCGGGCGGCGAAAGCATGAACCTGTACGCCCGTACGGG CGTCATCCTCGCTGGCGGCGGGTTTCCGCAGGACGTGGAGCGTCGCAAGGCGCTATTTCCGCACGCACCGAATGGAACCG AGCATCTGTCGCCCGCGCCGGCCAGCAACACGGGTGACGGACTTCGCCTCGCTGCGAATGCCGGCGCGGCGCTCGAACTC GACCTGCCTAATGCCGCCGCCTGGATACCCGTTTCGAAGGTGCCGTATCGCAACGGCGAGTCCGGTGTATTTCCTCATCT GATCGACCGGTACAAACCAGGCGTCATCATGGTGACGCGAAACGGACTTCGCTTTACTAACGAATCCAACTCGTATCACG ACGTCGGCATGGCAATGCAGAAGGCGTGCCGGGATAGCGATGCGACAGAGGCTTTCCTGATCTGCGATCACCGAACCTTG CGACGCTACGGCCTGGGATTCGTCAAGCCGTTTCCCATTCCGTTTGGTCCGCATCTGCGCAGCGGCTACCTGAAGCGCGG ACGCACACTAGCCGAACTGGCGGATGCGGCCGGCATCGATGCTGCGGCCTTCGAACGTACGGTCGCGACTTTCAACGAAG GAGCGGTGCATGGTGAAGACCATCAGTTCGGACGCGGCAATTCCGCGTACAACCGTTTTCTTGGCGATGCAGAACATCAG CCGAATCCTTGTGTCGCGCCGATCCAGGACGGGCCGTTCTACGCGATTCGAACAGTAATCGGCGATCTTGGCACCTTCGC CGGGATTCGCACGGATGGCTGTGCGCGGGCGCTCGATTCAAGCGGGCATGTGGTGCCCGGTTTGTACGCGGTGGGAAACG ACGCCGCAAGCGTAATGGGTGGGAATTATCCGGGCGGCGGCATTACCCTGGGACCGGCGATGACCTTCGGTTTTCTCGCG GGCGAGCACGCTGCGAAAACCGCGCGCGGCGCGCGGGAAAACGCGCTAAGTCTGGATATGCCGGTAGCCGAGGTCAGCGT GCTGGCGCGCAGCAGCGAGCAGGCGCCCTGA
Upstream 100 bases:
>100_bases GAGGGGCGCACTCGTGCTGTCGTTCTTTCTGAAGCCAAACAGGTTTCTGTCGGGCGAGCTGGCAGGACAGGAACTCAAGT AAAGCGGCACGCGGGTCGAC
Downstream 100 bases:
>100_bases CACCGCAAAACGGAAACGGCGTCTCGCTGAAAAGGATGCGAATGGAACCCGAGCTGAAGGCGTTGATAGAACAACTAAGC CAGGCAGGGCGGCGGCCGTT
Product: putative dehydrogenase
Products: NA
Alternate protein names: 3-keto-Delta(4)-steroid Delta(1)-dehydrogenase; KSDD; 3-oxo-Delta(4)-steroid 1-dehydrogenase; KSTD [H]
Number of amino acids: Translated: 596; Mature: 595
Protein sequence:
>596_residues MGKGAQVVNEFDVIVVGAGAGGMAAAVSAAKNGASVIVIEKDKVLGGTTARSGGVLWIPCHPFSQQSPAEDSIENATTYL RHEAGRYFNAEKVQAFLHNGPRMVDWFQRETDVKFVSVPEFSDYHPDAAGGLPGGRSILAAPFDGRELGKKIEWLRPPLR EITFVGMMFNASKEISQFFNVTRSLASAWYVTKRLVTHAREMLTYGRAMRLTNGNALAARLAKSAFDCDIPFRLDTRVER LLMEGRRVAGVAVNSGGESMNLYARTGVILAGGGFPQDVERRKALFPHAPNGTEHLSPAPASNTGDGLRLAANAGAALEL DLPNAAAWIPVSKVPYRNGESGVFPHLIDRYKPGVIMVTRNGLRFTNESNSYHDVGMAMQKACRDSDATEAFLICDHRTL RRYGLGFVKPFPIPFGPHLRSGYLKRGRTLAELADAAGIDAAAFERTVATFNEGAVHGEDHQFGRGNSAYNRFLGDAEHQ PNPCVAPIQDGPFYAIRTVIGDLGTFAGIRTDGCARALDSSGHVVPGLYAVGNDAASVMGGNYPGGGITLGPAMTFGFLA GEHAAKTARGARENALSLDMPVAEVSVLARSSEQAP
Sequences:
>Translated_596_residues MGKGAQVVNEFDVIVVGAGAGGMAAAVSAAKNGASVIVIEKDKVLGGTTARSGGVLWIPCHPFSQQSPAEDSIENATTYL RHEAGRYFNAEKVQAFLHNGPRMVDWFQRETDVKFVSVPEFSDYHPDAAGGLPGGRSILAAPFDGRELGKKIEWLRPPLR EITFVGMMFNASKEISQFFNVTRSLASAWYVTKRLVTHAREMLTYGRAMRLTNGNALAARLAKSAFDCDIPFRLDTRVER LLMEGRRVAGVAVNSGGESMNLYARTGVILAGGGFPQDVERRKALFPHAPNGTEHLSPAPASNTGDGLRLAANAGAALEL DLPNAAAWIPVSKVPYRNGESGVFPHLIDRYKPGVIMVTRNGLRFTNESNSYHDVGMAMQKACRDSDATEAFLICDHRTL RRYGLGFVKPFPIPFGPHLRSGYLKRGRTLAELADAAGIDAAAFERTVATFNEGAVHGEDHQFGRGNSAYNRFLGDAEHQ PNPCVAPIQDGPFYAIRTVIGDLGTFAGIRTDGCARALDSSGHVVPGLYAVGNDAASVMGGNYPGGGITLGPAMTFGFLA GEHAAKTARGARENALSLDMPVAEVSVLARSSEQAP >Mature_595_residues GKGAQVVNEFDVIVVGAGAGGMAAAVSAAKNGASVIVIEKDKVLGGTTARSGGVLWIPCHPFSQQSPAEDSIENATTYLR HEAGRYFNAEKVQAFLHNGPRMVDWFQRETDVKFVSVPEFSDYHPDAAGGLPGGRSILAAPFDGRELGKKIEWLRPPLRE ITFVGMMFNASKEISQFFNVTRSLASAWYVTKRLVTHAREMLTYGRAMRLTNGNALAARLAKSAFDCDIPFRLDTRVERL LMEGRRVAGVAVNSGGESMNLYARTGVILAGGGFPQDVERRKALFPHAPNGTEHLSPAPASNTGDGLRLAANAGAALELD LPNAAAWIPVSKVPYRNGESGVFPHLIDRYKPGVIMVTRNGLRFTNESNSYHDVGMAMQKACRDSDATEAFLICDHRTLR RYGLGFVKPFPIPFGPHLRSGYLKRGRTLAELADAAGIDAAAFERTVATFNEGAVHGEDHQFGRGNSAYNRFLGDAEHQP NPCVAPIQDGPFYAIRTVIGDLGTFAGIRTDGCARALDSSGHVVPGLYAVGNDAASVMGGNYPGGGITLGPAMTFGFLAG EHAAKTARGARENALSLDMPVAEVSVLARSSEQAP
Specific function: Catalyzes the elimination of the C-1 and C-2 hydrogen atoms of the A-ring from the polycyclic ring structure of 3- ketosteroids. Is also involved in the formation of 3-keto-1,4- diene-steroid from 3-keto-4-ene-steroid [H]
COG id: COG1053
COG function: function code C; Succinate dehydrogenase/fumarate reductase, flavoprotein subunit
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the FAD-dependent oxidoreductase 2 family. 3-oxosteroid dehydrogenase subfamily [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: =1.3.99.4 [H]
Molecular weight: Translated: 63748; Mature: 63617
Theoretical pI: Translated: 8.16; Mature: 8.16
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGKGAQVVNEFDVIVVGAGAGGMAAAVSAAKNGASVIVIEKDKVLGGTTARSGGVLWIPC CCCCCCCCCCCCEEEEECCCCCHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCEEEEEC HPFSQQSPAEDSIENATTYLRHEAGRYFNAEKVQAFLHNGPRMVDWFQRETDVKFVSVPE CCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHCCCEEEEECCC FSDYHPDAAGGLPGGRSILAAPFDGRELGKKIEWLRPPLREITFVGMMFNASKEISQFFN CCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHCCCHHHHEEEHHHHCCHHHHHHHHH VTRSLASAWYVTKRLVTHAREMLTYGRAMRLTNGNALAARLAKSAFDCDIPFRLDTRVER HHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHCCCCCCEEHHHHHHH LLMEGRRVAGVAVNSGGESMNLYARTGVILAGGGFPQDVERRKALFPHAPNGTEHLSPAP HHHCCCEEEEEEEECCCCCEEEEEECCEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCCC ASNTGDGLRLAANAGAALELDLPNAAAWIPVSKVPYRNGESGVFPHLIDRYKPGVIMVTR CCCCCCCEEEEECCCCEEEEECCCCEEEEECCCCCCCCCCCCCCHHHHHHCCCCEEEEEC NGLRFTNESNSYHDVGMAMQKACRDSDATEAFLICDHRTLRRYGLGFVKPFPIPFGPHLR CCEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHCCCCCCCCCCCCCCCHH SGYLKRGRTLAELADAAGIDAAAFERTVATFNEGAVHGEDHQFGRGNSAYNRFLGDAEHQ HHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHCCCCCCC PNPCVAPIQDGPFYAIRTVIGDLGTFAGIRTDGCARALDSSGHVVPGLYAVGNDAASVMG CCCCEECCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCEEEECCCHHHHCC GNYPGGGITLGPAMTFGFLAGEHAAKTARGARENALSLDMPVAEVSVLARSSEQAP CCCCCCCEEECHHHHHHHHHCHHHHHHHCCCCCCCEECCCCHHHHHHHHHCCCCCC >Mature Secondary Structure GKGAQVVNEFDVIVVGAGAGGMAAAVSAAKNGASVIVIEKDKVLGGTTARSGGVLWIPC CCCCCCCCCCCEEEEECCCCCHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCEEEEEC HPFSQQSPAEDSIENATTYLRHEAGRYFNAEKVQAFLHNGPRMVDWFQRETDVKFVSVPE CCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHCCCEEEEECCC FSDYHPDAAGGLPGGRSILAAPFDGRELGKKIEWLRPPLREITFVGMMFNASKEISQFFN CCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHCCCHHHHEEEHHHHCCHHHHHHHHH VTRSLASAWYVTKRLVTHAREMLTYGRAMRLTNGNALAARLAKSAFDCDIPFRLDTRVER HHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHCCCCCCEEHHHHHHH LLMEGRRVAGVAVNSGGESMNLYARTGVILAGGGFPQDVERRKALFPHAPNGTEHLSPAP HHHCCCEEEEEEEECCCCCEEEEEECCEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCCC ASNTGDGLRLAANAGAALELDLPNAAAWIPVSKVPYRNGESGVFPHLIDRYKPGVIMVTR CCCCCCCEEEEECCCCEEEEECCCCEEEEECCCCCCCCCCCCCCHHHHHHCCCCEEEEEC NGLRFTNESNSYHDVGMAMQKACRDSDATEAFLICDHRTLRRYGLGFVKPFPIPFGPHLR CCEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHCCCCCCCCCCCCCCCHH SGYLKRGRTLAELADAAGIDAAAFERTVATFNEGAVHGEDHQFGRGNSAYNRFLGDAEHQ HHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHCCCCCCC PNPCVAPIQDGPFYAIRTVIGDLGTFAGIRTDGCARALDSSGHVVPGLYAVGNDAASVMG CCCCEECCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCEEEECCCHHHHCC GNYPGGGITLGPAMTFGFLAGEHAAKTARGARENALSLDMPVAEVSVLARSSEQAP CCCCCCCEEECHHHHHHHHHCHHHHHHHCCCCCCCEECCCCHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12218036 [H]