| Definition | Burkholderia xenovorans LB400 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_007951 |
| Length | 4,895,836 |
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The map label for this gene is fadN [H]
Identifier: 91781808
GI number: 91781808
Start: 472763
End: 475198
Strand: Direct
Name: fadN [H]
Synonym: Bxe_A4037
Alternate gene names: 91781808
Gene position: 472763-475198 (Clockwise)
Preceding gene: 91781807
Following gene: 91781809
Centisome position: 9.66
GC content: 64.24
Gene sequence:
>2436_bases GTGAGCAATCTGATCATTCGCAAGGTAGCCGTGCTCGGCGCCGGCGTGATGGGCGCGCAGATCGCCGCGCACCTGATCAA CGCCAAGGTGCCCGTGCTGCTGTTCGATCTGCCTGCCAAGGAAGGCCCGAAGAACGCGATCGCGCTGAAGGCGATCGAGA ATCTGAAGAAGCTGTCGCCCGCGCCGTTCGGCGTGAAGGACGACGCGCAATACGTCCAGCCGGCCAACTACGACGACGAC ATCGGGAAGCTCGCCGAATGCGACCTCGTGATCGAAGCGATCGCCGAGCGCATGGACTGGAAGCACGACCTGTACAGGAA AGTAGCGCCGCATCTCGCGCCGAACGCGATTTTCGCGACCAACACGTCGGGCCTGTCGATCACCGCGCTCTCGGAAGGTT TCCCGGATGAACTGAAGGCGCGCTTCTGCGGCGTGCACTTCTTCAATCCGCCGCGCTACATGCACCTGGTCGAACTGATC CCGACCGCGACCACACGCCCGGAAATTCTCGACCAACTCGAGTCGTTCCTGACCAGCGTGGTCGGCAAAGGCGTCGTGCG TGCAAAAGATACGCCGAACTTCATCGCCAACCGCGTGGGGATTTTCTCGATTCTCGCTGTCGTGACCGAAGCCGCGAAAT ACGGCCTGCGTTTCGACGAAGTGGACGACCTGACCGGCGCACGTCTGGGCCGCGCGAAGTCGGCCACGTTCCGTACCGCG GACGTGGTCGGTCTGGACACGATGGCGCACGTCATCAAGACGATGCAGGACACGCTGAAGGACGACCCGTTCTATCCGGT CTACGAAACGCCGGCTGTGCTGGCCGAACTGGTGAAGAAGGGCGCGCTGGGCCAGAAAACTGGCGGCGGCTTCTACAGGA AAGAAGGCAAGGCGATCAAGGTGCTCGACGCGAAAACGGGCGAGTACGTGGACGGCGGCGCGAAGGCGGACGAACTGGTC GGCCGCATCCTGAAGCGCCCGCCGGCGGAGCGTCTGAAGCTGCTGCGCGAATCGGAGCATCCGCAGGCGCAGTTCCTGTG GGCGATTTTCCGCGACGTGTATCACTATATCGGCGTGCATCTGGAATCGATCGCCGACAACGCGCGCGACGTCGATCTGG CGATCCGCTGGGGCTTCGGCTGGAACGAAGGCCCGTTCGAAGGCTGGCAGACGGCCGGCTGGAAGCAGGTCGCCGAGTGG GTGCAGGAAGACATCGCAGCCGGCAAGGCGCTCTCGAACGCGCCGCTGCCGTCGTGGGTGCTGGAAGGTCCGGTGGCCGA GAAAGGCGGCGTGCATACCAACGAAGGTTCGTGGTCGCCGGCTTCGAAGACGTTCGTGCCGCGCTCGTCGCTGTCGGTCT ACGACAAACAGGTGTTCCGTGCGCCGCTGGTCGGCGAAACCGCCGCTGATCCGAAGACCTACGGCAAGACGCTGTTCGAA ACCGACGCCGTGCGCGCCTGGGTCGACGATCGGGCCGGCGAGAACGATGTGCTGATCGTGTCGTTCAAAAGCAAGATGAA CACGATCGGACCGTCGGTGATCGACGGTCTCACGCAGGCGATCGAACTGGCCGAAAAGGACTACAAGGGTCTGGTGGTGT GGCAGCCCACGTCGCTGAAACTCGGCACGCCGGGCGGCCCGTTCTCCGCGGGCGCCAACCTCGAGGAAGCGATGCCGGCC TTCATGATGGGCGGCGCGAAGGGCATCGAGCCGTTCGTGAAGAAATTCCAGCAAGGCATGTTGCGCGTGAAGTATGCAAG CGTGCCGGTCATTTCGGCCGTGTCGGGCATCGCGCTCGGCGGCGGTTGCGAACTGGCGCTGCATAGCGCGAAGCGGGTCG CGCATATCGAGAGCTATCTCGGGCTGGTGGAAGTCGGCGTGGGTCTCGTGCCCGCCGGCGGCGGCCTGAAGGAAGCGGCG CTGCGCGCGGCGGAAGCGGCGACGCAAGTCGGCGCGACCAACGACCTGCTGAAGTTCGTGCAGAAGTCGTTCGAAAACGC GGCGATGGCGAAGGTCTCGGCCTCCGCGCTTGACGCCCGCGCGATGGGCTACCTGAAGCCGTCCGATACGATCGTCTTCA ACGTGTTCGAGTTGCTCGACGTCGCGAAGAAGGAGGCGCGCGCGTTGTCGGCGGCGGGTTATCGTCCGCCGCTGCGGGTC ACGCAAGTGCCGGTGGCCGGCCGCTCGGCGATCGCGACCATCAAGGCGTCGCTCGTCAACATGCGCGATGGCCGTTTTAT CAGCGAGCACGACTTCCTGATTGCGAGTCGCATCGCGGAAGCGGTGTGCGGCGGCGACGTGGAAGCGGGCAGCCTGGTCG ATGAAGAATGGCTGCTGCAACTCGAGCGTCGTGCGTTCGTCGATCTGCTCGGCACGCAAAAGACGCAGGAACGGATCATG GGCATGCTGCAAACCGGCAAGCCGGTGCGCAACTGA
Upstream 100 bases:
>100_bases GGCGCCACGCGCTGGAAAATGCGTGGCGCCTGCGTCAGCCACCTGTCGCGAAGCGTCCAACCAGGCTTCGCGACCCCGCA TATCTCCCCGGAGGAACGAC
Downstream 100 bases:
>100_bases GCGACGAGCCAATAGGAGATTCAAATGGCAAAGCAATTGCAAGACGCATACATCGTCGCCGCGAGCCGCACGCCGATCGG CAAGGCGCCGCGCGGGATGT
Product: 3-hydroxyacyl-CoA dehydrogenase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 811; Mature: 810
Protein sequence:
>811_residues MSNLIIRKVAVLGAGVMGAQIAAHLINAKVPVLLFDLPAKEGPKNAIALKAIENLKKLSPAPFGVKDDAQYVQPANYDDD IGKLAECDLVIEAIAERMDWKHDLYRKVAPHLAPNAIFATNTSGLSITALSEGFPDELKARFCGVHFFNPPRYMHLVELI PTATTRPEILDQLESFLTSVVGKGVVRAKDTPNFIANRVGIFSILAVVTEAAKYGLRFDEVDDLTGARLGRAKSATFRTA DVVGLDTMAHVIKTMQDTLKDDPFYPVYETPAVLAELVKKGALGQKTGGGFYRKEGKAIKVLDAKTGEYVDGGAKADELV GRILKRPPAERLKLLRESEHPQAQFLWAIFRDVYHYIGVHLESIADNARDVDLAIRWGFGWNEGPFEGWQTAGWKQVAEW VQEDIAAGKALSNAPLPSWVLEGPVAEKGGVHTNEGSWSPASKTFVPRSSLSVYDKQVFRAPLVGETAADPKTYGKTLFE TDAVRAWVDDRAGENDVLIVSFKSKMNTIGPSVIDGLTQAIELAEKDYKGLVVWQPTSLKLGTPGGPFSAGANLEEAMPA FMMGGAKGIEPFVKKFQQGMLRVKYASVPVISAVSGIALGGGCELALHSAKRVAHIESYLGLVEVGVGLVPAGGGLKEAA LRAAEAATQVGATNDLLKFVQKSFENAAMAKVSASALDARAMGYLKPSDTIVFNVFELLDVAKKEARALSAAGYRPPLRV TQVPVAGRSAIATIKASLVNMRDGRFISEHDFLIASRIAEAVCGGDVEAGSLVDEEWLLQLERRAFVDLLGTQKTQERIM GMLQTGKPVRN
Sequences:
>Translated_811_residues MSNLIIRKVAVLGAGVMGAQIAAHLINAKVPVLLFDLPAKEGPKNAIALKAIENLKKLSPAPFGVKDDAQYVQPANYDDD IGKLAECDLVIEAIAERMDWKHDLYRKVAPHLAPNAIFATNTSGLSITALSEGFPDELKARFCGVHFFNPPRYMHLVELI PTATTRPEILDQLESFLTSVVGKGVVRAKDTPNFIANRVGIFSILAVVTEAAKYGLRFDEVDDLTGARLGRAKSATFRTA DVVGLDTMAHVIKTMQDTLKDDPFYPVYETPAVLAELVKKGALGQKTGGGFYRKEGKAIKVLDAKTGEYVDGGAKADELV GRILKRPPAERLKLLRESEHPQAQFLWAIFRDVYHYIGVHLESIADNARDVDLAIRWGFGWNEGPFEGWQTAGWKQVAEW VQEDIAAGKALSNAPLPSWVLEGPVAEKGGVHTNEGSWSPASKTFVPRSSLSVYDKQVFRAPLVGETAADPKTYGKTLFE TDAVRAWVDDRAGENDVLIVSFKSKMNTIGPSVIDGLTQAIELAEKDYKGLVVWQPTSLKLGTPGGPFSAGANLEEAMPA FMMGGAKGIEPFVKKFQQGMLRVKYASVPVISAVSGIALGGGCELALHSAKRVAHIESYLGLVEVGVGLVPAGGGLKEAA LRAAEAATQVGATNDLLKFVQKSFENAAMAKVSASALDARAMGYLKPSDTIVFNVFELLDVAKKEARALSAAGYRPPLRV TQVPVAGRSAIATIKASLVNMRDGRFISEHDFLIASRIAEAVCGGDVEAGSLVDEEWLLQLERRAFVDLLGTQKTQERIM GMLQTGKPVRN >Mature_810_residues SNLIIRKVAVLGAGVMGAQIAAHLINAKVPVLLFDLPAKEGPKNAIALKAIENLKKLSPAPFGVKDDAQYVQPANYDDDI GKLAECDLVIEAIAERMDWKHDLYRKVAPHLAPNAIFATNTSGLSITALSEGFPDELKARFCGVHFFNPPRYMHLVELIP TATTRPEILDQLESFLTSVVGKGVVRAKDTPNFIANRVGIFSILAVVTEAAKYGLRFDEVDDLTGARLGRAKSATFRTAD VVGLDTMAHVIKTMQDTLKDDPFYPVYETPAVLAELVKKGALGQKTGGGFYRKEGKAIKVLDAKTGEYVDGGAKADELVG RILKRPPAERLKLLRESEHPQAQFLWAIFRDVYHYIGVHLESIADNARDVDLAIRWGFGWNEGPFEGWQTAGWKQVAEWV QEDIAAGKALSNAPLPSWVLEGPVAEKGGVHTNEGSWSPASKTFVPRSSLSVYDKQVFRAPLVGETAADPKTYGKTLFET DAVRAWVDDRAGENDVLIVSFKSKMNTIGPSVIDGLTQAIELAEKDYKGLVVWQPTSLKLGTPGGPFSAGANLEEAMPAF MMGGAKGIEPFVKKFQQGMLRVKYASVPVISAVSGIALGGGCELALHSAKRVAHIESYLGLVEVGVGLVPAGGGLKEAAL RAAEAATQVGATNDLLKFVQKSFENAAMAKVSASALDARAMGYLKPSDTIVFNVFELLDVAKKEARALSAAGYRPPLRVT QVPVAGRSAIATIKASLVNMRDGRFISEHDFLIASRIAEAVCGGDVEAGSLVDEEWLLQLERRAFVDLLGTQKTQERIMG MLQTGKPVRN
Specific function: Involved in the degradation of long-chain fatty acids [H]
COG id: COG1250
COG function: function code I; 3-hydroxyacyl-CoA dehydrogenase
Gene ontology:
Cell location: Mitochondria or Peroxisomes [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the 3-hydroxyacyl-CoA dehydrogenase family [H]
Homologues:
Organism=Homo sapiens, GI296179429, Length=298, Percent_Identity=30.8724832214765, Blast_Score=121, Evalue=3e-27, Organism=Homo sapiens, GI296179427, Length=313, Percent_Identity=30.3514376996805, Blast_Score=116, Evalue=9e-26, Organism=Homo sapiens, GI261878539, Length=427, Percent_Identity=24.1217798594848, Blast_Score=90, Evalue=8e-18, Organism=Homo sapiens, GI68989263, Length=427, Percent_Identity=24.1217798594848, Blast_Score=90, Evalue=9e-18, Organism=Homo sapiens, GI20127408, Length=420, Percent_Identity=25.952380952381, Blast_Score=88, Evalue=3e-17, Organism=Escherichia coli, GI1787661, Length=307, Percent_Identity=30.9446254071661, Blast_Score=104, Evalue=2e-23, Organism=Escherichia coli, GI1790281, Length=229, Percent_Identity=28.3842794759825, Blast_Score=82, Evalue=2e-16, Organism=Escherichia coli, GI1788682, Length=333, Percent_Identity=25.8258258258258, Blast_Score=72, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17553560, Length=297, Percent_Identity=33.3333333333333, Blast_Score=119, Evalue=5e-27, Organism=Caenorhabditis elegans, GI17563036, Length=295, Percent_Identity=32.5423728813559, Blast_Score=114, Evalue=1e-25, Organism=Caenorhabditis elegans, GI17549919, Length=303, Percent_Identity=33.003300330033, Blast_Score=111, Evalue=2e-24, Organism=Caenorhabditis elegans, GI17558304, Length=390, Percent_Identity=26.6666666666667, Blast_Score=99, Evalue=1e-20, Organism=Caenorhabditis elegans, GI17508951, Length=421, Percent_Identity=27.0783847980998, Blast_Score=95, Evalue=1e-19, Organism=Caenorhabditis elegans, GI17508953, Length=421, Percent_Identity=27.0783847980998, Blast_Score=95, Evalue=2e-19, Organism=Caenorhabditis elegans, GI25144276, Length=295, Percent_Identity=31.5254237288136, Blast_Score=94, Evalue=3e-19, Organism=Caenorhabditis elegans, GI71985923, Length=297, Percent_Identity=26.9360269360269, Blast_Score=83, Evalue=6e-16, Organism=Caenorhabditis elegans, GI71985930, Length=412, Percent_Identity=21.8446601941748, Blast_Score=79, Evalue=1e-14, Organism=Drosophila melanogaster, GI24583077, Length=367, Percent_Identity=23.433242506812, Blast_Score=74, Evalue=4e-13, Organism=Drosophila melanogaster, GI24583079, Length=367, Percent_Identity=23.433242506812, Blast_Score=74, Evalue=4e-13, Organism=Drosophila melanogaster, GI19921000, Length=352, Percent_Identity=23.5795454545455, Blast_Score=74, Evalue=4e-13, Organism=Drosophila melanogaster, GI45549573, Length=226, Percent_Identity=25.2212389380531, Blast_Score=67, Evalue=5e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006176 - InterPro: IPR006108 - InterPro: IPR008927 - InterPro: IPR001753 - InterPro: IPR013328 - InterPro: IPR016040 [H]
Pfam domain/function: PF00725 3HCDH; PF02737 3HCDH_N; PF00378 ECH [H]
EC number: =1.1.1.35 [H]
Molecular weight: Translated: 87558; Mature: 87426
Theoretical pI: Translated: 7.19; Mature: 7.19
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSNLIIRKVAVLGAGVMGAQIAAHLINAKVPVLLFDLPAKEGPKNAIALKAIENLKKLSP CCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCC APFGVKDDAQYVQPANYDDDIGKLAECDLVIEAIAERMDWKHDLYRKVAPHLAPNAIFAT CCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCEEEE NTSGLSITALSEGFPDELKARFCGVHFFNPPRYMHLVELIPTATTRPEILDQLESFLTSV CCCCEEEEEECCCCCHHHHHHHHCEEECCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHH VGKGVVRAKDTPNFIANRVGIFSILAVVTEAAKYGLRFDEVDDLTGARLGRAKSATFRTA HCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCHH DVVGLDTMAHVIKTMQDTLKDDPFYPVYETPAVLAELVKKGALGQKTGGGFYRKEGKAIK HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCEECCCCEEE VLDAKTGEYVDGGAKADELVGRILKRPPAERLKLLRESEHPQAQFLWAIFRDVYHYIGVH EEECCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH LESIADNARDVDLAIRWGFGWNEGPFEGWQTAGWKQVAEWVQEDIAAGKALSNAPLPSWV HHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHH LEGPVAEKGGVHTNEGSWSPASKTFVPRSSLSVYDKQVFRAPLVGETAADPKTYGKTLFE HCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHH TDAVRAWVDDRAGENDVLIVSFKSKMNTIGPSVIDGLTQAIELAEKDYKGLVVWQPTSLK HHHHHHHHHCCCCCCCEEEEEEHHHHHHCCHHHHHHHHHHHHHHHHCCCEEEEECCCCEE LGTPGGPFSAGANLEEAMPAFMMGGAKGIEPFVKKFQQGMLRVKYASVPVISAVSGIALG ECCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHEEEEECCCCHHHHHHHHEEC GGCELALHSAKRVAHIESYLGLVEVGVGLVPAGGGLKEAALRAAEAATQVGATNDLLKFV CCHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHCCCHHHHHHHH QKSFENAAMAKVSASALDARAMGYLKPSDTIVFNVFELLDVAKKEARALSAAGYRPPLRV HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEE TQVPVAGRSAIATIKASLVNMRDGRFISEHDFLIASRIAEAVCGGDVEAGSLVDEEWLLQ EECCCCCCHHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH LERRAFVDLLGTQKTQERIMGMLQTGKPVRN HHHHHHHHHHCCHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure SNLIIRKVAVLGAGVMGAQIAAHLINAKVPVLLFDLPAKEGPKNAIALKAIENLKKLSP CCHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCC APFGVKDDAQYVQPANYDDDIGKLAECDLVIEAIAERMDWKHDLYRKVAPHLAPNAIFAT CCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCEEEE NTSGLSITALSEGFPDELKARFCGVHFFNPPRYMHLVELIPTATTRPEILDQLESFLTSV CCCCEEEEEECCCCCHHHHHHHHCEEECCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHH VGKGVVRAKDTPNFIANRVGIFSILAVVTEAAKYGLRFDEVDDLTGARLGRAKSATFRTA HCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCHH DVVGLDTMAHVIKTMQDTLKDDPFYPVYETPAVLAELVKKGALGQKTGGGFYRKEGKAIK HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCEECCCCEEE VLDAKTGEYVDGGAKADELVGRILKRPPAERLKLLRESEHPQAQFLWAIFRDVYHYIGVH EEECCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH LESIADNARDVDLAIRWGFGWNEGPFEGWQTAGWKQVAEWVQEDIAAGKALSNAPLPSWV HHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHH LEGPVAEKGGVHTNEGSWSPASKTFVPRSSLSVYDKQVFRAPLVGETAADPKTYGKTLFE HCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHH TDAVRAWVDDRAGENDVLIVSFKSKMNTIGPSVIDGLTQAIELAEKDYKGLVVWQPTSLK HHHHHHHHHCCCCCCCEEEEEEHHHHHHCCHHHHHHHHHHHHHHHHCCCEEEEECCCCEE LGTPGGPFSAGANLEEAMPAFMMGGAKGIEPFVKKFQQGMLRVKYASVPVISAVSGIALG ECCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHEEEEECCCCHHHHHHHHEEC GGCELALHSAKRVAHIESYLGLVEVGVGLVPAGGGLKEAALRAAEAATQVGATNDLLKFV CCHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHCCCHHHHHHHH QKSFENAAMAKVSASALDARAMGYLKPSDTIVFNVFELLDVAKKEARALSAAGYRPPLRV HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEE TQVPVAGRSAIATIKASLVNMRDGRFISEHDFLIASRIAEAVCGGDVEAGSLVDEEWLLQ EECCCCCCHHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH LERRAFVDLLGTQKTQERIMGMLQTGKPVRN HHHHHHHHHHCCHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]